Stx8 (syntaxin 8) - Rat Genome Database

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Gene: Stx8 (syntaxin 8) Mus musculus
Analyze
Symbol: Stx8
Name: syntaxin 8
RGD ID: 62210
MGI Page MGI
Description: Enables ubiquitin protein ligase binding activity. Acts upstream of or within cellular response to type II interferon. Located in phagocytic vesicle. Is active in late endosome. Orthologous to human STX8 (syntaxin 8).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 0610007H08Rik; 1110002H11Rik; 4930571E13Rik; CARB; syntaxin-8; syntaxin-like protein 3I35
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391167,857,237 - 68,097,974 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1167,857,019 - 68,097,974 (+)EnsemblGRCm39 Ensembl
GRCm381167,966,411 - 68,207,148 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1167,966,193 - 68,207,148 (+)EnsemblGRCm38mm10GRCm38
MGSCv371167,779,985 - 68,020,650 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361167,782,678 - 68,023,343 (+)NCBIMGSCv36mm8
Celera1174,904,672 - 75,144,681 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1141.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:14623309   PMID:15489334   PMID:15761153  
PMID:16141072   PMID:16141073   PMID:16465594   PMID:16760431   PMID:18799693   PMID:18821010   PMID:19144319   PMID:21677750   PMID:21873635   PMID:24550300   PMID:24652767   PMID:25404741  
PMID:28532839   PMID:28855648   PMID:30973865  


Genomics

Comparative Map Data
Stx8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391167,857,237 - 68,097,974 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1167,857,019 - 68,097,974 (+)EnsemblGRCm39 Ensembl
GRCm381167,966,411 - 68,207,148 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1167,966,193 - 68,207,148 (+)EnsemblGRCm38mm10GRCm38
MGSCv371167,779,985 - 68,020,650 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361167,782,678 - 68,023,343 (+)NCBIMGSCv36mm8
Celera1174,904,672 - 75,144,681 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1141.2NCBI
STX8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38179,250,471 - 9,575,820 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl179,250,471 - 9,576,591 (-)EnsemblGRCh38hg38GRCh38
GRCh37179,153,788 - 9,479,137 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36179,094,513 - 9,420,000 (-)NCBINCBI36Build 36hg18NCBI36
Build 34179,094,513 - 9,420,000NCBI
Celera179,185,566 - 9,511,610 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef179,052,731 - 9,379,133 (-)NCBIHuRef
CHM1_1179,162,819 - 9,489,516 (-)NCBICHM1_1
T2T-CHM13v2.0179,157,469 - 9,484,308 (-)NCBIT2T-CHM13v2.0
Stx8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81053,154,572 - 53,393,912 (+)NCBIGRCr8
mRatBN7.21052,655,643 - 52,900,048 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1052,654,990 - 52,894,993 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1057,324,601 - 57,561,500 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01056,813,619 - 57,050,517 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01052,312,324 - 52,551,325 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01054,512,922 - 54,753,302 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1054,512,983 - 54,753,302 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01054,258,182 - 54,498,841 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41054,700,557 - 54,942,042 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11054,714,179 - 54,955,665 (+)NCBI
Celera1051,834,263 - 52,070,021 (+)NCBICelera
Cytogenetic Map10q24NCBI
Stx8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554677,523,464 - 7,792,056 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554677,524,223 - 7,789,630 (+)NCBIChiLan1.0ChiLan1.0
STX8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21964,169,987 - 64,497,426 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11768,980,428 - 69,307,350 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01742,076,600 - 42,403,334 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11746,816,709 - 47,141,923 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1746,816,859 - 47,141,816 (+)Ensemblpanpan1.1panPan2
STX8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1533,834,218 - 34,091,827 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl533,834,279 - 34,091,757 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha533,970,462 - 34,228,208 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0533,937,733 - 34,196,280 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl533,937,794 - 34,196,194 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1533,904,727 - 34,162,119 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0533,862,380 - 34,120,132 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0534,038,879 - 34,300,241 (-)NCBIUU_Cfam_GSD_1.0
Stx8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560248,854,575 - 49,104,600 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365952,328,740 - 2,578,791 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365952,328,763 - 2,578,788 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STX8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1254,296,995 - 54,544,646 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11254,296,988 - 54,544,668 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21257,133,672 - 57,198,153 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STX8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1168,613,551 - 8,937,428 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605912,406,787 - 12,742,033 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stx8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478611,712,667 - 11,992,201 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Stx8
8411 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2650
Count of miRNA genes:843
Interacting mature miRNAs:1157
Transcripts:ENSMUST00000021285, ENSMUST00000021286, ENSMUST00000108675, ENSMUST00000129992, ENSMUST00000142649, ENSMUST00000148642
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115925661769482699Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
4141642Ltxs2_mlethal factor toxin susceptibility 2 (mouse)Not determined116304211368500330Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse

Markers in Region
P74  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381168,056,690 - 68,056,791UniSTSGRCm38
MGSCv371167,870,192 - 67,870,293UniSTSGRCm37
Celera1174,994,939 - 74,995,040UniSTS
Cytogenetic Map11B3UniSTS
cM Map1137.0UniSTS
Whitehead Genetic1136.1UniSTS
D11Mit27.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381168,056,535 - 68,056,675UniSTSGRCm38
MGSCv371167,870,037 - 67,870,177UniSTSGRCm37
Celera1174,994,784 - 74,994,924UniSTS
Cytogenetic Map11B3UniSTS
cM Map1137.0UniSTS
cM Map11 UniSTS
Whitehead Genetic1136.1UniSTS
AU028141  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381168,016,156 - 68,016,387UniSTSGRCm38
MGSCv371167,829,658 - 67,829,889UniSTSGRCm37
Celera1174,954,404 - 74,954,635UniSTS
Cytogenetic Map11B3UniSTS
RH126321  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381168,192,716 - 68,192,949UniSTSGRCm38
MGSCv371168,006,218 - 68,006,451UniSTSGRCm37
Celera1175,130,720 - 75,130,953UniSTS
Cytogenetic Map11B3UniSTS
Whitehead/MRC_RH11883.86UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001356314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB040054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF036716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF093064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL663076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE984450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ192523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ192524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000021285   ⟹   ENSMUSP00000021285
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1167,857,019 - 68,097,974 (+)Ensembl
GRCm38.p6 Ensembl1167,966,193 - 68,207,148 (+)Ensembl
RefSeq Acc Id: ENSMUST00000021286   ⟹   ENSMUSP00000021286
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1167,857,295 - 67,878,433 (+)Ensembl
GRCm38.p6 Ensembl1167,966,469 - 67,987,607 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108675   ⟹   ENSMUSP00000104315
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1167,857,306 - 67,865,417 (+)Ensembl
GRCm38.p6 Ensembl1167,966,480 - 67,974,591 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129992
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1167,857,316 - 68,094,596 (+)Ensembl
GRCm38.p6 Ensembl1167,966,490 - 68,203,770 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142649
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1167,857,332 - 67,864,467 (+)Ensembl
GRCm38.p6 Ensembl1167,966,506 - 67,973,641 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148642
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1167,857,318 - 67,865,290 (+)Ensembl
GRCm38.p6 Ensembl1167,966,492 - 67,974,464 (+)Ensembl
RefSeq Acc Id: NM_001356314   ⟹   NP_001343243
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391167,857,284 - 67,878,435 (+)NCBI
GRCm381167,966,458 - 67,987,609 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001361350   ⟹   NP_001348279
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391167,857,284 - 68,097,974 (+)NCBI
GRCm381167,966,458 - 68,207,148 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001361351   ⟹   NP_001348280
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391167,857,284 - 68,097,974 (+)NCBI
GRCm381167,966,458 - 68,207,148 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001361352   ⟹   NP_001348281
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391167,857,284 - 67,865,420 (+)NCBI
GRCm381167,966,458 - 67,974,594 (+)NCBI
Sequence:
RefSeq Acc Id: NM_018768   ⟹   NP_061238
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391167,857,284 - 68,097,974 (+)NCBI
GRCm381167,966,458 - 68,207,148 (+)NCBI
MGSCv371167,779,985 - 68,020,650 (+)RGD
Celera1174,904,672 - 75,144,681 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030246161   ⟹   XP_030102021
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391167,857,237 - 67,890,226 (+)NCBI
GRCm381167,966,411 - 67,999,400 (+)NCBI
Sequence:
RefSeq Acc Id: NP_061238   ⟸   NM_018768
- Peptide Label: isoform 1
- UniProtKB: O88983 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030102021   ⟸   XM_030246161
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001348280   ⟸   NM_001361351
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001348279   ⟸   NM_001361350
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001343243   ⟸   NM_001356314
- Peptide Label: isoform 2
- UniProtKB: Q9D0J1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001348281   ⟸   NM_001361352
- Peptide Label: isoform 4
- UniProtKB: Q8BS59 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000021286   ⟸   ENSMUST00000021286
RefSeq Acc Id: ENSMUSP00000021285   ⟸   ENSMUST00000021285
RefSeq Acc Id: ENSMUSP00000104315   ⟸   ENSMUST00000108675
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88983-F1-model_v2 AlphaFold O88983 1-236 view protein structure

Promoters
RGD ID:6822255
Promoter ID:MM_KWN:7972
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000108675,   OTTMUST00000013226,   OTTMUST00000013229,   OTTMUST00000013231,   UC007JNI.1,   UC007JNK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361167,779,741 - 67,780,241 (+)MPROMDB
RGD ID:8675094
Promoter ID:EPDNEW_M15578
Type:initiation region
Name:Stx8_1
Description:Mus musculus syntaxin 8 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381167,966,489 - 67,966,549EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1890156 AgrOrtholog
Ensembl Genes ENSMUSG00000020903 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000021285 ENTREZGENE
  ENSMUST00000021285.14 UniProtKB/Swiss-Prot
  ENSMUST00000021286 ENTREZGENE
  ENSMUST00000021286.11 UniProtKB/TrEMBL
  ENSMUST00000108675 ENTREZGENE
  ENSMUST00000108675.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/Swiss-Prot
InterPro Syntaxin UniProtKB/Swiss-Prot
  Syntaxin-8_SNARE UniProtKB/Swiss-Prot
  T_SNARE_dom UniProtKB/Swiss-Prot
KEGG Report mmu:55943 UniProtKB/Swiss-Prot
MGD MGI:1890156 ENTREZGENE
NCBI Gene 55943 ENTREZGENE
PANTHER PTHR19957 UniProtKB/Swiss-Prot
  SYNTAXIN-8 UniProtKB/Swiss-Prot
Pfam SNARE UniProtKB/Swiss-Prot
PhenoGen Stx8 PhenoGen
PROSITE T_SNARE UniProtKB/Swiss-Prot
SMART t_SNARE UniProtKB/Swiss-Prot
Superfamily-SCOP SNARE fusion complex UniProtKB/Swiss-Prot
UniProt O88983 ENTREZGENE
  Q8BS59 ENTREZGENE, UniProtKB/TrEMBL
  Q9D0J1 ENTREZGENE, UniProtKB/TrEMBL
  STX8_MOUSE UniProtKB/Swiss-Prot