Nr1h3 (nuclear receptor subfamily 1, group H, member 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Nr1h3 (nuclear receptor subfamily 1, group H, member 3) Mus musculus
Analyze
Symbol: Nr1h3
Name: nuclear receptor subfamily 1, group H, member 3
RGD ID: 62202
MGI Page MGI
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Contributes to nuclear receptor activity and transcription cis-regulatory region binding activity. Involved in several processes, including lipid homeostasis; negative regulation of secretion; and regulation of transcription by RNA polymerase II. Acts upstream of or within cellular lipid metabolic process and negative regulation of transcription, DNA-templated. Located in cytoplasm and nucleus. Part of RNA polymerase II transcription regulator complex. Is expressed in several structures, including 1st branchial arch; genitourinary system; gut; hemolymphoid system gland; and nervous system. Used to study ovarian hyperstimulation syndrome. Human ortholog(s) of this gene implicated in obesity. Orthologous to human NR1H3 (nuclear receptor subfamily 1 group H member 3); PARTICIPATES IN bile acid signaling pathway; hepatitis C pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,2',4,4',5,5'-hexachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AU018371; liver X receptor alpha; LXR; LXR alpha; nuclear receptor subfamily 1 group H member 3; oxysterols receptor LXR-alpha; RLD1; ubiquitously-expressed nuclear receptor 1; Un; Unr1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39291,014,406 - 91,033,189 (-)NCBIGRCm39mm39
GRCm39 Ensembl291,014,406 - 91,033,179 (-)Ensembl
GRCm38291,184,061 - 91,202,829 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl291,184,061 - 91,202,834 (-)EnsemblGRCm38mm10GRCm38
MGSCv37291,024,218 - 91,035,273 (-)NCBIGRCm37mm9NCBIm37
MGSCv36290,984,949 - 90,995,955 (-)NCBImm8
Celera292,568,901 - 92,580,220 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.52NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(24S)-24-hydroxycholesterol  (ISO)
(25R)-cholest-5-ene-3beta,26-diol  (ISO)
(S)-nicotine  (ISO)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-di-tert-butyl-4-methylphenol  (ISO)
2,6-dinitrotoluene  (ISO)
2-methyl-6-(phenylethynyl)pyridine  (ISO)
2-trans,6-trans,10-trans-geranylgeranyl diphosphate  (EXP)
22-Hydroxycholesterol  (EXP,ISO)
25-hydroxycholesterol  (EXP,ISO)
26-hydroxycholesterol  (ISO)
3-aminobenzamide  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
3-methylcholanthrene  (ISO)
3beta-hydroxycholest-5-en-26-oic acid  (ISO)
4,4-dimethyl-5alpha-cholesta-8,14,24-trien-3beta-ol  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-(4-chlorophenyl)imidazo[2,1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime  (ISO)
6-propyl-2-thiouracil  (ISO)
8-(4-chlorophenylthio)-cAMP  (EXP)
9-cis,11-trans-octadecadienoic acid  (EXP)
9-cis-retinoic acid  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
allopurinol  (ISO)
ammonium chloride  (ISO)
androstane  (EXP)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-naphthoflavone  (ISO)
bexarotene  (ISO)
bezafibrate  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
bosentan  (ISO)
bucladesine  (EXP)
cadmium atom  (ISO)
cerium trichloride  (EXP)
chitosan  (ISO)
cholesterol  (EXP,ISO)
cholic acid  (ISO)
ciglitazone  (ISO)
ciprofibrate  (EXP)
cisplatin  (ISO)
clofibrate  (EXP,ISO)
copper(II) sulfate  (ISO)
curcumin  (ISO)
cycloheximide  (ISO)
cyclosporin A  (ISO)
D-gluconic acid  (ISO)
D-glucose  (ISO)
dexamethasone  (EXP,ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
emodin  (ISO)
endosulfan  (ISO)
ethanol  (ISO)
etoposide  (ISO)
fenofibrate  (EXP,ISO)
finasteride  (ISO)
flavonoids  (ISO)
fumonisin B1  (EXP)
gemfibrozil  (EXP,ISO)
genistein  (EXP,ISO)
glucose  (ISO)
glycerol 2-phosphate  (ISO)
GW 3965  (EXP,ISO)
GW 501516  (EXP,ISO)
hexadecanoic acid  (EXP,ISO)
hydralazine  (ISO)
ketoconazole  (ISO)
kuwanone G  (EXP)
L-ascorbic acid  (ISO)
lansoprazole  (ISO)
lead diacetate  (ISO)
lead nitrate  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (EXP,ISO)
lithocholic acid  (EXP,ISO)
losartan  (ISO)
magnesium atom  (ISO)
melatonin  (EXP)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monosodium L-glutamate  (EXP,ISO)
N-nitrosodiethylamine  (EXP)
NAD zwitterion  (ISO)
NAD(+)  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
nicotine  (ISO)
nicotinic acid  (EXP,ISO)
oleic acid  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
Paxilline  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorononanoic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pioglitazone  (EXP,ISO)
pirfenidone  (ISO)
pirinixic acid  (EXP,ISO)
pitavastatin  (EXP)
pitavastatin(1-)  (EXP)
platycodin D  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (EXP)
prostaglandin J2  (ISO)
quercetin  (EXP,ISO)
resveratrol  (EXP,ISO)
rifampicin  (ISO)
SB 203580  (ISO)
selenium atom  (ISO)
simvastatin  (EXP)
sirolimus  (ISO)
sodium arsenite  (EXP)
sodium cholate  (EXP)
streptozocin  (ISO)
temozolomide  (ISO)
teniposide  (ISO)
Tesaglitazar  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (ISO)
tetramethylpyrazine  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
triadimefon  (EXP)
tributylstannane  (EXP,ISO)
Tributyltin oxide  (EXP)
triphenyl phosphate  (ISO)
triptonide  (EXP)
troglitazone  (ISO)
uranium atom  (ISO)
valproic acid  (ISO)
vecuronium bromide  (ISO)
vitexin  (EXP)
zearalenone  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
apoptotic cell clearance  (ISO)
bile acid signaling pathway  (ISO)
cell differentiation  (IBA)
cellular lipid metabolic process  (IDA)
cellular response to lipopolysaccharide  (IDA,ISO)
cholesterol homeostasis  (IGI,IMP,ISO)
fatty acid biosynthetic process  (TAS)
insulin receptor signaling pathway  (ISO)
lipid homeostasis  (IGI,IMP)
lipid metabolic process  (IEA,ISO)
negative regulation of cholesterol storage  (IGI,ISO)
negative regulation of cold-induced thermogenesis  (IGI)
negative regulation of inflammatory response  (IBA,IDA)
negative regulation of lipid transport  (ISO)
negative regulation of macrophage activation  (IDA)
negative regulation of pancreatic juice secretion  (IMP)
negative regulation of pinocytosis  (ISO)
negative regulation of proteolysis  (IMP)
negative regulation of response to endoplasmic reticulum stress  (IDA)
negative regulation of secretion of lysosomal enzymes  (IMP)
negative regulation of transcription by RNA polymerase II  (IBA,IDA)
negative regulation of transcription, DNA-templated  (IMP)
phosphatidylcholine acyl-chain remodeling  (IMP)
positive regulation of cellular protein metabolic process  (ISO)
positive regulation of cholesterol efflux  (IDA,ISO)
positive regulation of cholesterol transport  (ISO)
positive regulation of fatty acid biosynthetic process  (ISO)
positive regulation of lipoprotein lipase activity  (ISO)
positive regulation of toll-like receptor 4 signaling pathway  (ISO)
positive regulation of transcription by RNA polymerase II  (IBA,IDA,ISO)
positive regulation of transcription, DNA-templated  (IMP,ISO)
positive regulation of triglyceride biosynthetic process  (ISO)
regulation of transcription, DNA-templated  (IDA)
response to cholesterol  (ISO)
response to nutrient levels  (ISO)
response to progesterone  (ISO)
sterol homeostasis  (IMP)
triglyceride homeostasis  (IGI,IMP)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal alveolar lamellar body morphology  (IAGP)
abnormal astrocyte morphology  (IAGP)
abnormal bile salt homeostasis  (IAGP)
abnormal bone marrow cell physiology  (IAGP)
abnormal brain ependyma morphology  (IAGP)
abnormal brain vasculature morphology  (IAGP)
abnormal brain ventricle morphology  (IAGP)
abnormal cellular cholesterol metabolism  (IAGP)
abnormal cerebral aqueduct morphology  (IAGP)
abnormal cholesterol homeostasis  (IAGP)
abnormal choroid plexus morphology  (IAGP)
abnormal corpus luteum morphology  (IAGP)
abnormal female reproductive system morphology  (IAGP)
abnormal female reproductive system physiology  (IAGP)
abnormal hepatobiliary system physiology  (IAGP)
abnormal kidney morphology  (IEA)
abnormal lateral ventricle morphology  (IAGP)
abnormal lipid homeostasis  (IAGP)
abnormal lipid level  (IAGP)
abnormal lung morphology  (IAGP)
abnormal macrophage morphology  (IAGP)
abnormal male germ cell apoptosis  (IAGP)
abnormal male reproductive system morphology  (IAGP)
abnormal male reproductive system physiology  (IAGP)
abnormal myelin sheath morphology  (IAGP)
abnormal myelination  (IAGP)
abnormal myometrium morphology  (IAGP)
abnormal neurohypophysis median eminence morphology  (IAGP)
abnormal ovary physiology  (IAGP)
abnormal parturition  (IAGP)
abnormal pulmonary alveolar parenchyma morphology  (IAGP)
abnormal pulmonary alveolar system morphology  (IAGP)
abnormal seminiferous tubule morphology  (IAGP)
abnormal Sertoli cell morphology  (IAGP)
abnormal spermatogonia proliferation  (IAGP)
abnormal spinal cord central canal morphology  (IAGP)
abnormal substantia nigra pars reticulata morphology  (IAGP)
abnormal superovulation  (IAGP)
abnormal third ventricle morphology  (IAGP)
abnormal uterus physiology  (IAGP)
absent choroid plexus  (IAGP)
amyloid beta deposits  (IAGP)
astrocytosis  (IAGP)
decreased circulating cholesterol level  (IAGP)
decreased circulating insulin level  (IEA)
decreased circulating luteinizing hormone level  (IAGP)
decreased circulating testosterone level  (IAGP)
decreased circulating triglyceride level  (IAGP)
decreased heart weight  (IEA)
decreased neuron number  (IAGP)
decreased neutrophil cell number  (IEA)
decreased physiological sensitivity to xenobiotic  (IAGP)
decreased susceptibility to endotoxin shock  (IAGP)
decreased testis weight  (IAGP)
enlarged liver  (IAGP)
enlarged ovary  (IAGP)
hepatic steatosis  (IAGP)
hindlimb paralysis  (IAGP)
impaired smooth muscle contractility  (IAGP)
increased circulating alanine transaminase level  (IAGP)
increased circulating aspartate transaminase level  (IAGP)
increased circulating cholesterol level  (IAGP)
increased circulating estradiol level  (IAGP)
increased circulating LDL cholesterol level  (IAGP)
increased erythrocyte cell number  (IEA)
increased erythrocyte sedimentation rate  (IAGP)
increased hematocrit  (IEA)
increased inflammatory response  (IAGP)
increased liver cholesterol level  (IAGP)
increased liver weight  (IAGP)
increased lung squamous cell carcinoma incidence  (IAGP)
increased lymphocyte cell number  (IEA)
increased macrophage derived foam cell number  (IAGP)
increased sensitivity to induced morbidity/mortality  (IAGP)
increased susceptibility to atherosclerosis  (IAGP)
increased susceptibility to bacterial infection  (IAGP)
increased vascular permeability  (IAGP)
intracranial hemorrhage  (IAGP)
Leydig cell hypertrophy  (IAGP)
liver degeneration  (IAGP)
lung inflammation  (IAGP)
neuron degeneration  (IAGP)
no abnormal phenotype detected  (IAGP)
ovary cysts  (IAGP)
ovary hemorrhage  (IAGP)
pale liver  (IAGP)
pregnancy-related premature death  (IAGP)
premature death  (IAGP)
reduced male fertility  (IAGP)
respiratory distress  (IAGP)
seminiferous tubule degeneration  (IAGP)
small fourth ventricle  (IAGP)
small lateral ventricles  (IAGP)
small third ventricle  (IAGP)
testicular atrophy  (IAGP)
References

Additional References at PubMed
PMID:9013544   PMID:9630215   PMID:10049761   PMID:10349636   PMID:10675617   PMID:10890879   PMID:10922068   PMID:10968783   PMID:11042159   PMID:11076861   PMID:11090130   PMID:11149950  
PMID:11208732   PMID:11217851   PMID:11238557   PMID:11546778   PMID:11682476   PMID:11714849   PMID:11792716   PMID:11851872   PMID:12040022   PMID:12054659   PMID:12086931   PMID:12097330  
PMID:12105210   PMID:12138207   PMID:12145154   PMID:12177004   PMID:12193599   PMID:12193651   PMID:12196343   PMID:12368482   PMID:12435796   PMID:12446833   PMID:12466851   PMID:12477932  
PMID:12518032   PMID:12524534   PMID:12531895   PMID:12542530   PMID:12551904   PMID:12554745   PMID:12588951   PMID:12601003   PMID:12612088   PMID:12730332   PMID:12815040   PMID:12897148  
PMID:12947111   PMID:12970362   PMID:14521951   PMID:14610273   PMID:14679166   PMID:14681479   PMID:14699103   PMID:14699507   PMID:14703507   PMID:14739254   PMID:15052659   PMID:15060163  
PMID:15146238   PMID:15171719   PMID:15292368   PMID:15319426   PMID:15371561   PMID:15479645   PMID:15525595   PMID:15561926   PMID:15591022   PMID:15601766   PMID:15618518   PMID:15674823  
PMID:15680331   PMID:15761042   PMID:15831500   PMID:15930522   PMID:15941783   PMID:16007255   PMID:16054068   PMID:16106051   PMID:16106052   PMID:16123164   PMID:16141072   PMID:16141073  
PMID:16141411   PMID:16249184   PMID:16260782   PMID:16325781   PMID:16424942   PMID:16447060   PMID:16498401   PMID:16505352   PMID:16511593   PMID:16547220   PMID:16614371   PMID:16806672  
PMID:16823488   PMID:16825483   PMID:16869726   PMID:16876124   PMID:16895745   PMID:16943421   PMID:16949052   PMID:16956579   PMID:16971476   PMID:16973760   PMID:16981222   PMID:17088263  
PMID:17107947   PMID:17166844   PMID:17177110   PMID:17218271   PMID:17256725   PMID:17296605   PMID:17341595   PMID:17369526   PMID:17445767   PMID:17563384   PMID:17628006   PMID:17657314  
PMID:17684114   PMID:17726195   PMID:17873880   PMID:17908797   PMID:17936707   PMID:18055760   PMID:18079124   PMID:18195045   PMID:18202130   PMID:18276933   PMID:18287559   PMID:18292813  
PMID:18318438   PMID:18330481   PMID:18356535   PMID:18372346   PMID:18450749   PMID:18450964   PMID:18547429   PMID:18566121   PMID:18611859   PMID:18614014   PMID:18769020   PMID:18772483  
PMID:18787185   PMID:18806227   PMID:18840761   PMID:18949453   PMID:18983830   PMID:19032342   PMID:19036902   PMID:19052228   PMID:19067122   PMID:19119143   PMID:19122149   PMID:19136075  
PMID:19196952   PMID:19201410   PMID:19238156   PMID:19325005   PMID:19342446   PMID:19366697   PMID:19380774   PMID:19395734   PMID:19436111   PMID:19487338   PMID:19520913   PMID:19608643  
PMID:19646905   PMID:19690071   PMID:19717840   PMID:19721697   PMID:19787047   PMID:19796621   PMID:19889862   PMID:19966778   PMID:19996385   PMID:20005944   PMID:20037141   PMID:20037595  
PMID:20049870   PMID:20059953   PMID:20080977   PMID:20110577   PMID:20118482   PMID:20125084   PMID:20159957   PMID:20193185   PMID:20211142   PMID:20375256   PMID:20388921   PMID:20412781  
PMID:20494359   PMID:20615868   PMID:20674863   PMID:20679224   PMID:20854262   PMID:20932939   PMID:21034810   PMID:21103366   PMID:21123945   PMID:21134374   PMID:21173252   PMID:21187453  
PMID:21266776   PMID:21267068   PMID:21343340   PMID:21349840   PMID:21398609   PMID:21441141   PMID:21492741   PMID:21504366   PMID:21521718   PMID:21558881   PMID:21562267   PMID:21593381  
PMID:21609322   PMID:21630010   PMID:21677638   PMID:21677750   PMID:21715627   PMID:21757649   PMID:21784849   PMID:21873635   PMID:21889884   PMID:21898498   PMID:21933863   PMID:22073227  
PMID:22152248   PMID:22156197   PMID:22158963   PMID:22323586   PMID:22415588   PMID:22415873   PMID:22454476   PMID:22481067   PMID:22484817   PMID:22547570   PMID:22580900   PMID:22610535  
PMID:22673513   PMID:22694168   PMID:22723445   PMID:22739758   PMID:22829162   PMID:22872236   PMID:22891211   PMID:22931956   PMID:22969086   PMID:22984430   PMID:22984598   PMID:22988430  
PMID:23021221   PMID:23029557   PMID:23063693   PMID:23073827   PMID:23077096   PMID:23085633   PMID:23099324   PMID:23110859   PMID:23159616   PMID:23266787   PMID:23292650   PMID:23318573  
PMID:23333450   PMID:23348573   PMID:23359226   PMID:23419360   PMID:23554947   PMID:23675307   PMID:23686490   PMID:23706740   PMID:23747249   PMID:23762402   PMID:23770640   PMID:23788762  
PMID:23823481   PMID:23836449   PMID:23867501   PMID:23897983   PMID:23945440   PMID:23990362   PMID:24163219   PMID:24194600   PMID:24201575   PMID:24206663   PMID:24259533   PMID:24277692  
PMID:24333430   PMID:24368671   PMID:24438183   PMID:24603323   PMID:24618263   PMID:24671012   PMID:24695360   PMID:24699378   PMID:24713658   PMID:24747959   PMID:24794974   PMID:24852699  
PMID:24857376   PMID:24915051   PMID:24947527   PMID:24952961   PMID:24994901   PMID:25081501   PMID:25187371   PMID:25271621   PMID:25273567   PMID:25277999   PMID:25421714   PMID:25477282  
PMID:25487979   PMID:25557254   PMID:25574839   PMID:25613943   PMID:25708389   PMID:25714463   PMID:25724563   PMID:25755249   PMID:25755733   PMID:25810299   PMID:25822709   PMID:25825525  
PMID:25946408   PMID:25956304   PMID:25962847   PMID:26023184   PMID:26075824   PMID:26076474   PMID:26160456   PMID:26173179   PMID:26239564   PMID:26324101   PMID:26332085   PMID:26402841  
PMID:26431776   PMID:26452260   PMID:26504234   PMID:26508642   PMID:26511317   PMID:26602218   PMID:26603933   PMID:26672918   PMID:26684450   PMID:26729489   PMID:26753692   PMID:26792941  
PMID:26814197   PMID:26851362   PMID:26887957   PMID:26938655   PMID:26940358   PMID:27085678   PMID:27180240   PMID:27251289   PMID:27251372   PMID:27285988   PMID:27335465   PMID:27365310  
PMID:27369072   PMID:27382175   PMID:27383786   PMID:27480224   PMID:27490478   PMID:27520356   PMID:27569282   PMID:27614433   PMID:27626380   PMID:27680310   PMID:27703007   PMID:27746237  
PMID:27807703   PMID:27888103   PMID:27987394   PMID:28034754   PMID:28041958   PMID:28052875   PMID:28082258   PMID:28147278   PMID:28231341   PMID:28239648   PMID:28241068   PMID:28244871  
PMID:28258092   PMID:28270440   PMID:28324010   PMID:28404878   PMID:28420650   PMID:28432199   PMID:28480221   PMID:28511797   PMID:28539336   PMID:28732092   PMID:28794002   PMID:28971895  
PMID:29033131   PMID:29142166   PMID:29301957   PMID:29336888   PMID:29409022   PMID:29410501   PMID:29431742   PMID:29454584   PMID:29507185   PMID:29688375   PMID:29739800   PMID:29743292  
PMID:29845234   PMID:29915246   PMID:29950315   PMID:30018108   PMID:30076102   PMID:30127022   PMID:30304667   PMID:30455459   PMID:30590048   PMID:30602495   PMID:30673619   PMID:31243309  
PMID:31417573   PMID:31432166   PMID:31587991   PMID:31759199   PMID:31783409   PMID:31875848   PMID:31980500   PMID:32097464   PMID:32286429   PMID:32325033   PMID:32371156   PMID:32414201  
PMID:32448508   PMID:32716519   PMID:32732898   PMID:32736671   PMID:33284790   PMID:33772096   PMID:33878353   PMID:34297734  


Genomics

Comparative Map Data
Nr1h3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39291,014,406 - 91,033,189 (-)NCBIGRCm39mm39
GRCm39 Ensembl291,014,406 - 91,033,179 (-)Ensembl
GRCm38291,184,061 - 91,202,829 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl291,184,061 - 91,202,834 (-)EnsemblGRCm38mm10GRCm38
MGSCv37291,024,218 - 91,035,273 (-)NCBIGRCm37mm9NCBIm37
MGSCv36290,984,949 - 90,995,955 (-)NCBImm8
Celera292,568,901 - 92,580,220 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.52NCBI
NR1H3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1147,248,300 - 47,269,033 (+)EnsemblGRCh38hg38GRCh38
GRCh381147,248,300 - 47,269,033 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371147,269,851 - 47,290,584 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361147,237,309 - 47,246,972 (+)NCBINCBI36hg18NCBI36
Build 341147,237,308 - 47,246,972NCBI
Celera1147,409,676 - 47,429,619 (+)NCBI
Cytogenetic Map11p11.2NCBI
HuRef1146,968,831 - 46,989,561 (+)NCBIHuRef
CHM1_11147,268,541 - 47,289,773 (+)NCBICHM1_1
Nr1h3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2377,158,808 - 77,168,907 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl377,158,808 - 77,168,722 (-)Ensembl
Rnor_6.0380,004,130 - 80,014,197 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl380,004,130 - 80,012,750 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0386,712,883 - 86,722,950 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4375,542,211 - 75,550,793 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1375,438,551 - 75,447,172 (-)NCBI
Celera376,367,211 - 76,375,760 (-)NCBICelera
Cytogenetic Map3q24NCBI
Nr1h3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955422940,310 - 949,049 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955422940,310 - 954,170 (-)NCBIChiLan1.0ChiLan1.0
NR1H3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11147,748,452 - 47,768,672 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1147,748,353 - 47,768,672 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01147,195,122 - 47,215,277 (+)NCBIMhudiblu_PPA_v0panPan3
NR1H3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11842,333,173 - 42,346,152 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1842,333,202 - 42,341,236 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1841,061,865 - 41,074,852 (-)NCBI
ROS_Cfam_1.01842,987,642 - 43,000,646 (-)NCBI
UMICH_Zoey_3.11842,473,538 - 42,486,527 (-)NCBI
UNSW_CanFamBas_1.01842,029,130 - 42,042,123 (-)NCBI
UU_Cfam_GSD_1.01842,758,228 - 42,771,525 (-)NCBI
Nr1h3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494719,826,023 - 19,835,848 (-)NCBI
SpeTri2.0NW_0049365621,937,665 - 1,946,680 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR1H3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl215,270,789 - 15,334,820 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1215,315,283 - 15,336,785 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2216,539,892 - 16,560,353 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NR1H3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,041,495 - 18,061,196 (-)NCBI
ChlSab1.1 Ensembl118,041,830 - 18,051,501 (-)Ensembl
Vero_WHO_p1.0NW_023666038115,344,981 - 115,364,565 (-)NCBI
Nr1h3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247671,459,601 - 1,473,224 (-)NCBI

Position Markers
RH136462  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38291,184,250 - 91,184,447UniSTSGRCm38
MGSCv37291,024,407 - 91,024,604UniSTSGRCm37
Celera292,569,090 - 92,569,287UniSTS
Cytogenetic Map2E1UniSTS
cM Map240.4UniSTS
STS-U22662  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38291,184,240 - 91,184,469UniSTSGRCm38
MGSCv37291,024,397 - 91,024,626UniSTSGRCm37
Celera292,569,080 - 92,569,309UniSTS
Cytogenetic Map2E1UniSTS
cM Map240.4UniSTS
PMC33205P3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38291,184,458 - 91,184,691UniSTSGRCm38
MGSCv37291,024,615 - 91,024,848UniSTSGRCm37
Celera292,569,298 - 92,569,531UniSTS
Cytogenetic Map2E1UniSTS
cM Map240.4UniSTS
MARC_26635-26636:1034090477:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38291,190,900 - 91,191,969UniSTSGRCm38
MGSCv37291,031,057 - 91,032,126UniSTSGRCm37
Celera292,576,011 - 92,577,087UniSTS
Cytogenetic Map2E1UniSTS
cM Map240.4UniSTS
ksks34  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38291,184,726 - 91,184,978UniSTSGRCm38
MGSCv37291,024,883 - 91,025,135UniSTSGRCm37
Celera292,569,566 - 92,569,817UniSTS
Cytogenetic Map2E1UniSTS
cM Map240.4UniSTS
Nr1h3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2E1UniSTS
cM Map250.52UniSTS
Nr1h3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2E1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388608993591306Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357829Lvrq1_mliver weight QTL 1 (mouse)Not determined220892967119064359Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220892967119064359Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220892967119064359Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220892967119064359Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220892967119064359Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220892967119064359Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220892967119064359Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224334620148858457Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229417935148533014Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31324555105313225Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240995481115079684Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245457623145470727Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25769377391693944Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25808964792089647Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260690268119525037Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)262000000137000000Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26317561097175769Mouse
1301405Etohr_methanol response acute (mouse)Not determined26317561097175769Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26317561097175769Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26317561097175769Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26317561097175769Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26317561097175769Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26373981097739957Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265439402162677006Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267817543101817798Mouse
13463482Mchq17_mmean corpuscular hemoglobin QTL 17 (mouse)267817543101817798Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268893925102894063Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268893925102894063Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74693773114293051Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274693773129371085Mouse
1301374Cplaq7_mcircadian period of locomotor activity 7 (mouse)Not determined276591138110591306Mouse
4141657Mohg1_mmodifier of hg 1 (mouse)Not determined276848414103265478Mouse
10043894Bw22_mbody weight QTL 22 (mouse)Not determined281064989115064989Mouse
1558901Skmw8_mskeletal muscle weight 8 (mouse)Not determined284178143118178248Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284182854148680255Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284182854148825550Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285893925181254801Mouse
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286265371120265478Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286265371120265478Mouse
1300852Lmr14_mleishmaniasis resistance 14 (mouse)Not determined286265371120265478Mouse
11049565Lmr28g_mleishmaniasis resistance 28g (mouse)286265371120265478Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287610298121610433Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288184658122184825Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88313078122313225Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1284
Count of miRNA genes:486
Interacting mature miRNAs:569
Transcripts:ENSMUST00000002177, ENSMUST00000111354, ENSMUST00000111355, ENSMUST00000111356, ENSMUST00000130031, ENSMUST00000133261, ENSMUST00000136234, ENSMUST00000150654
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001177730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF085745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ132599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ132600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ132601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL691450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY195870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY195871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU007910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000002177   ⟹   ENSMUSP00000002177
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,014,406 - 91,025,461 (-)Ensembl
GRCm38.p6 Ensembl291,184,061 - 91,195,116 (-)Ensembl
RefSeq Acc Id: ENSMUST00000111354   ⟹   ENSMUSP00000106986
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,014,437 - 91,025,496 (-)Ensembl
GRCm38.p6 Ensembl291,184,092 - 91,195,151 (-)Ensembl
RefSeq Acc Id: ENSMUST00000111355   ⟹   ENSMUSP00000106987
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,014,437 - 91,025,230 (-)Ensembl
GRCm38.p6 Ensembl291,184,092 - 91,194,885 (-)Ensembl
RefSeq Acc Id: ENSMUST00000111356   ⟹   ENSMUSP00000106988
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,014,406 - 91,025,380 (-)Ensembl
GRCm38.p6 Ensembl291,184,061 - 91,195,035 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130031
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,014,551 - 91,023,089 (-)Ensembl
GRCm38.p6 Ensembl291,184,206 - 91,192,744 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133261
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,020,530 - 91,021,280 (-)Ensembl
GRCm38.p6 Ensembl291,190,185 - 91,190,935 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136234
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,022,376 - 91,033,179 (-)Ensembl
GRCm38.p6 Ensembl291,192,031 - 91,202,834 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150654
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,014,406 - 91,025,370 (-)Ensembl
GRCm38.p6 Ensembl291,184,061 - 91,195,025 (-)Ensembl
RefSeq Acc Id: NM_001177730   ⟹   NP_001171201
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,014,406 - 91,025,461 (-)NCBI
GRCm38291,184,061 - 91,195,116 (-)NCBI
MGSCv37291,024,218 - 91,035,273 (-)RGD
Celera292,568,901 - 92,580,220 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001355279   ⟹   NP_001342208
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,014,406 - 91,025,461 (-)NCBI
GRCm38291,184,061 - 91,195,116 (-)NCBI
Sequence:
RefSeq Acc Id: NM_013839   ⟹   NP_038867
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,014,406 - 91,025,380 (-)NCBI
GRCm38291,184,061 - 91,195,035 (-)NCBI
MGSCv37291,024,218 - 91,035,273 (-)RGD
Celera292,568,901 - 92,580,220 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006499167   ⟹   XP_006499230
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,014,437 - 91,025,467 (-)NCBI
GRCm38291,184,092 - 91,195,123 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006499168   ⟹   XP_006499231
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,014,437 - 91,033,189 (-)NCBI
GRCm38291,184,092 - 91,202,829 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030249465   ⟹   XP_030105325
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,014,437 - 91,025,548 (-)NCBI
GRCm38291,184,092 - 91,195,177 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_038867   ⟸   NM_013839
- UniProtKB: Q9Z0Y9 (UniProtKB/Swiss-Prot),   Q91X41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171201   ⟸   NM_001177730
- UniProtKB: Q9Z0Y9 (UniProtKB/Swiss-Prot),   Q91X41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006499231   ⟸   XM_006499168
- Peptide Label: isoform X1
- UniProtKB: Q9Z0Y9 (UniProtKB/Swiss-Prot),   Q91X41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006499230   ⟸   XM_006499167
- Peptide Label: isoform X1
- UniProtKB: Q9Z0Y9 (UniProtKB/Swiss-Prot),   Q91X41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001342208   ⟸   NM_001355279
RefSeq Acc Id: XP_030105325   ⟸   XM_030249465
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000106986   ⟸   ENSMUST00000111354
RefSeq Acc Id: ENSMUSP00000106987   ⟸   ENSMUST00000111355
RefSeq Acc Id: ENSMUSP00000106988   ⟸   ENSMUST00000111356
RefSeq Acc Id: ENSMUSP00000002177   ⟸   ENSMUST00000002177
Protein Domains
NR LBD   Nuclear receptor

Promoters
RGD ID:6831944
Promoter ID:MM_KWN:30459
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000034174
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36291,030,396 - 91,030,896 (-)MPROMDB
RGD ID:6831943
Promoter ID:MM_KWN:30460
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3
Transcripts:OTTMUST00000034171
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36291,033,401 - 91,033,901 (-)MPROMDB
RGD ID:6831942
Promoter ID:MM_KWN:30461
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung
Transcripts:ENSMUST00000111355,   ENSMUST00000111356,   ENSMUST00000111358,   OTTMUST00000034167,   OTTMUST00000034170,   UC008KVD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36291,035,056 - 91,035,762 (-)MPROMDB
RGD ID:6832410
Promoter ID:MM_KWN:30462
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000099722,   OTTMUST00000034158,   OTTMUST00000034159,   OTTMUST00000034160,   OTTMUST00000034161,   OTTMUST00000034175,   OTTMUST00000083494,   OTTMUST00000083495
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36291,042,186 - 91,043,167 (-)MPROMDB
RGD ID:6877894
Promoter ID:EPDNEW_M2398
Type:initiation region
Name:Nr1h3_2
Description:Mus musculus nuclear receptor subfamily 1, group H, member 3, transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2399  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38291,194,777 - 91,194,837EPDNEW
RGD ID:6877896
Promoter ID:EPDNEW_M2399
Type:initiation region
Name:Nr1h3_1
Description:Mus musculus nuclear receptor subfamily 1, group H, member 3, transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2398  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38291,195,060 - 91,195,120EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1352462 AgrOrtholog
Ensembl Genes ENSMUSG00000002108 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000002177 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000106986 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000106987 UniProtKB/TrEMBL
  ENSMUSP00000106988 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000002177 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000111354 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000111355 UniProtKB/TrEMBL
  ENSMUST00000111356 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.565.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Liver_X_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NHR-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22259 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1352462 ENTREZGENE
NCBI Gene 22259 ENTREZGENE
Pfam Hormone_recep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nr1h3 PhenoGen
PRINTS LIVERXRECPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STROIDFINGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOLI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48508 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AGR4_MOUSE UniProtKB/TrEMBL
  NR1H3_MOUSE UniProtKB/Swiss-Prot
  Q91X41 ENTREZGENE, UniProtKB/TrEMBL
  Q9Z0Y9 ENTREZGENE
UniProt Secondary Q9QUH7 UniProtKB/Swiss-Prot