Rab7 (RAB7, member RAS oncogene family)

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Gene: Rab7 (RAB7, member RAS oncogene family) Mus musculus

Analyze

Symbol:

Rab7

Name:

RAB7, member RAS oncogene family

RGD ID:

62201

MGI Page

MGI

Description:

Predicted to enable several functions, including guanyl ribonucleotide binding activity; retromer complex binding activity; and small GTPase binding activity. Involved in lipophagy. Acts upstream of or within with a positive effect on establishment of vesicle localization. Located in several cellular components, including late endosome membrane; lipid droplet; and phagophore assembly site membrane. Is extrinsic component of lysosome membrane. Is active in lysosome. Is expressed in limb mesenchyme and lung mesenchyme. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2B. Orthologous to human RAB7A (RAB7A, member RAS oncogene family).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

MGC102153; Rab7a; ras-related protein Rab-7a

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RAB7A (RAB7A, member RAS oncogene family)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Rab7a (RAB7A, member RAS oncogene family)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Rab7a (RAB7A, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RAB7A (RAB7A, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RAB7A (RAB7A, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rab7a (RAB7A, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RAB7A (RAB7A, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RAB7A (RAB7A, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rab7a (RAB7A, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Rab7a (RAB7A, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RAB7A (RAB7A, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rab-7	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Rab7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YPT7	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rab7a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Related Pseudogenes:

Gm8475 Rab7-ps1

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	87,976,088 - 88,022,252 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	87,976,088 - 88,022,252 (-)	Ensembl
GRCm38	6	87,999,106 - 88,045,270 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	87,999,106 - 88,045,270 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	87,950,429 - 87,963,684 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	87,964,764 - 88,010,861 (-)	NCBI			mm8
Celera	6	89,937,361 - 89,950,664 (-)	NCBI		Celera
Cytogenetic Map	6	D1	NCBI
cM Map	6	39.13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alkaptonuria (ISO)

Charcot-Marie-Tooth disease (ISO)

Charcot-Marie-Tooth disease type 2 (ISO)

Charcot-Marie-Tooth disease type 2B (ISO)

erythromelalgia (ISO)

immunodeficiency 21 (ISO)

Myocardial Ischemia (ISO)

Primary Lymphedema with Myelodysplasia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (EXP)

1,2-dimethylhydrazine (EXP)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (EXP)

17alpha-ethynylestradiol (EXP)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3',4,4',5-Pentachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (ISO)

2-methoxyethanol (ISO)

5-aza-2'-deoxycytidine (ISO)

acrylamide (ISO)

alginic acid (EXP)

alpha-hexachlorocyclohexane (ISO)

ammonium chloride (ISO)

antirheumatic drug (ISO)

arsenous acid (ISO)

benzo[a]pyrene (EXP,ISO)

bexarotene (ISO)

bisphenol A (ISO)

Brodifacoum (ISO)

buspirone (ISO)

cadmium atom (EXP)

cadmium dichloride (EXP,ISO)

caffeine (EXP)

calcium atom (ISO)

calcium(0) (ISO)

carbon nanotube (EXP)

chenodeoxycholic acid (EXP)

chloropicrin (ISO)

cholic acid (EXP)

ciguatoxin CTX1B (EXP)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

diarsenic trioxide (ISO)

dimethylarsinic acid (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (EXP)

gentamycin (ISO)

haloperidol (ISO)

hydrogen peroxide (ISO)

ivermectin (ISO)

lead(0) (ISO)

lead(2+) (ISO)

melatonin (ISO)

methamphetamine (ISO)

methidathion (EXP)

N-acetyl-L-cysteine (ISO)

N-hydroxy-PhIP (ISO)

nefazodone (ISO)

nickel atom (ISO)

nicotine (EXP)

paracetamol (EXP)

phenylmercury acetate (ISO)

piroxicam (ISO)

resveratrol (EXP,ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sodium fluoride (EXP)

taurocholic acid (EXP)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (EXP)

tetrachloromethane (ISO)

thapsigargin (ISO)

uranium atom (ISO)

valproic acid (ISO)

vinclozolin (ISO)

zinc atom (ISO)

zinc(0) (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

autophagosome assembly (ISO)

autophagy (IEA)

bone resorption (ISO)

early endosome to late endosome transport (ISO)

endosome to lysosome transport (IBA,ISO)

endosome to plasma membrane protein transport (ISO)

epidermal growth factor catabolic process (ISO)

establishment of vesicle localization (IMP)

intracellular protein transport (TAS)

intracellular transport (ISO)

lipid catabolic process (IEA)

lipid metabolic process (IEA)

lipophagy (IMP)

negative regulation of exosomal secretion (ISO)

phagosome acidification (ISO)

phagosome-lysosome fusion (IBA,ISO)

positive regulation of exosomal secretion (ISO)

positive regulation of protein catabolic process (ISO)

positive regulation of viral process (ISO)

protein targeting to lysosome (ISO)

protein to membrane docking (ISO)

protein transport (IEA)

response to bacterium (ISO)

retrograde transport, endosome to Golgi (ISO)

viral release from host cell (ISO)

Cellular Component

alveolar lamellar body (ISO)

anchored component of synaptic vesicle membrane (ISO)

cytoplasm (IDA)

cytoplasmic vesicle (ISO)

endosome (IDA)

endosome membrane (ISO)

exocytic vesicle (ISO)

extrinsic component of lysosome membrane (IDA)

Golgi apparatus (IDA)

late endosome (IBA,IDA,ISO)

late endosome membrane (IDA)

lipid droplet (IDA)

lysosome (IBA,IDA,ISO)

membrane (IEA)

mitochondrion (ISO)

phagocytic vesicle (IBA,ISO)

phagophore assembly site membrane (IDA)

retromer complex (ISO)

Molecular Function

G protein activity (IEA)

GDP binding (ISO)

GTP binding (ISO)

GTPase activity (ISO)

hydrolase activity (IEA)

nucleotide binding (IEA)

protein binding (IPI)

retromer complex binding (ISO)

small GTPase binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

autophagy pathway (ISO)

endocytosis pathway (IEA)

Entamoebiasis pathway (IEA)

interleukin-12 signaling pathway (ISO)

tuberculosis pathway (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal autophagy (IAGP)

abnormal primitive streak elongation (IAGP)

abnormal T cell morphology (IAGP)

abnormal T cell physiology (IAGP)

abnormal T cell subpopulation ratio (IAGP)

abnormal visceral endoderm morphology (IAGP)

decreased CD4-positive, alpha beta T cell number (IAGP)

decreased CD8-positive, alpha-beta T cell number (IAGP)

decreased T cell number (IAGP)

decreased T cell proliferation (IAGP)

embryonic lethality (IAGP)

failure to gastrulate (IAGP)

increased mitochondrial size (IAGP)

lethality, incomplete penetrance (IAGP)

no abnormal phenotype detected (IEA)

oxidative stress (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome.	Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78.
3.	Overview of macroautophagy regulation in mammalian cells.	Mehrpour M, etal., Cell Res. 2010 Jul;20(7):748-62. Epub 2010 Jun 15.
4.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
5.	MGDs mouse GO annotations	MGD data from the GO Consortium
6.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
8.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
9.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
10.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
11.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8521519	PMID:8547311	PMID:8889548	PMID:8954989	PMID:9585432	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11042173	PMID:11076861	PMID:11172003	PMID:11773082
PMID:11856727	PMID:12054610	PMID:12477932	PMID:12520002	PMID:12545426	PMID:12640132	PMID:12904583	PMID:12972561	PMID:14610273	PMID:15078902	PMID:15328023	PMID:15340014
PMID:15489334	PMID:15588329	PMID:15745951	PMID:15782199	PMID:15870394	PMID:16141072	PMID:16141073	PMID:16602821	PMID:16763563	PMID:16923123	PMID:17046692	PMID:17287360
PMID:17967808	PMID:18656450	PMID:18692022	PMID:18799693	PMID:18955491	PMID:19368996	PMID:19509052	PMID:19587007	PMID:19956673	PMID:20004763	PMID:20059953	PMID:20152176
PMID:20236428	PMID:20363736	PMID:20645406	PMID:20943658	PMID:21248257	PMID:21267068	PMID:21327095	PMID:21438969	PMID:21604690	PMID:21677750	PMID:21683685	PMID:21770032
PMID:21873635	PMID:22275436	PMID:22467241	PMID:22698281	PMID:22854957	PMID:22909026	PMID:22990867	PMID:23028046	PMID:23554936	PMID:23615463	PMID:23708524	PMID:24035762
PMID:24334765	PMID:24457600	PMID:24549040	PMID:24586722	PMID:24760869	PMID:25063677	PMID:25127994	PMID:25592972	PMID:25735755	PMID:25740947	PMID:25774384	PMID:26465331
PMID:26496610	PMID:26582200	PMID:26865414	PMID:27294511	PMID:27378698	PMID:27390154	PMID:27609571	PMID:27777970	PMID:27793976	PMID:27811335	PMID:28264927	PMID:28378742
PMID:28465352	PMID:28588238	PMID:28671696	PMID:28860274	PMID:28924047	PMID:29158485	PMID:29381137	PMID:29712939	PMID:29907658	PMID:30135482	PMID:30201994	PMID:30550785
PMID:30590051	PMID:30713523	PMID:30721447	PMID:30985297	PMID:31079930	PMID:31300538	PMID:31932498	PMID:32088968	PMID:32229179	PMID:32279353	PMID:32325033	PMID:32521258
PMID:32543313	PMID:32968282	PMID:32978479	PMID:33340069	PMID:33677131	PMID:33846297	PMID:33966596	PMID:34028500	PMID:34309175	PMID:34530854	PMID:34588579

Genomics

Comparative Map Data

Rab7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	87,976,088 - 88,022,252 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	87,976,088 - 88,022,252 (-)	Ensembl
GRCm38	6	87,999,106 - 88,045,270 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	87,999,106 - 88,045,270 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	87,950,429 - 87,963,684 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	87,964,764 - 88,010,861 (-)	NCBI			mm8
Celera	6	89,937,361 - 89,950,664 (-)	NCBI		Celera
Cytogenetic Map	6	D1	NCBI
cM Map	6	39.13	NCBI

RAB7A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	128,726,183 - 128,814,798 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	3	128,693,669 - 128,825,942 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	128,445,026 - 128,533,641 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	129,927,669 - 130,016,331 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	3	129,927,676 - 130,016,339	NCBI
Celera	3	126,877,121 - 126,965,892 (+)	NCBI
Cytogenetic Map	3	q21.3	NCBI
HuRef	3	125,832,324 - 125,921,106 (+)	NCBI		HuRef
CHM1_1	3	128,408,152 - 128,496,845 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	131,470,839 - 131,559,516 (+)	NCBI

Rab7a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	120,461,966 - 120,510,756 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	4	120,461,963 - 120,506,889 (-)	Ensembl
Rnor_6.0	4	119,910,461 - 119,963,065 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	119,910,478 - 119,959,173 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	185,158,344 - 185,209,333 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	122,202,685 - 122,220,649 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	4	122,447,168 - 122,465,130 (-)	NCBI
Celera	4	109,421,363 - 109,466,326 (-)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

Rab7a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955429	15,103,792 - 15,167,498 (-)	NCBI	ChiLan1.0	ChiLan1.0

RAB7A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	133,214,246 - 133,233,403 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
Mhudiblu_PPA_v0	3	125,784,604 - 125,873,051 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

RAB7A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	2,704,716 - 2,776,518 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	2,704,752 - 2,826,636 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	2,792,411 - 2,812,258 (+)	NCBI
ROS_Cfam_1.0	20	2,724,992 - 2,797,106 (+)	NCBI
ROS_Cfam_1.0 Ensembl	20	2,725,012 - 2,798,427 (+)	Ensembl
UMICH_Zoey_3.1	20	2,496,060 - 2,515,882 (+)	NCBI
UNSW_CanFamBas_1.0	20	2,822,274 - 2,842,051 (+)	NCBI
UU_Cfam_GSD_1.0	20	2,783,313 - 2,803,191 (+)	NCBI

Rab7a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404942	20,255,730 - 20,263,118 (-)	NCBI
SpeTri2.0	NW_004936798	297,600 - 304,929 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAB7A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	71,777,420 - 71,886,581 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	71,777,422 - 71,886,758 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	79,450,127 - 79,456,601 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAB7A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	52,231,481 - 52,309,276 (-)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	22	52,230,835 - 52,309,306 (-)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666041	114,053,255 - 114,130,507 (+)	NCBI	Vero_WHO_p1.0

Rab7a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004625042	56,517 - 112,612 (+)	Ensembl	HetGla_female_1.0		hetGla2
HetGla 1.0	NW_004625042	56,509 - 112,519 (+)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

PMC124275P2

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	9	54,824,219 - 54,824,723	UniSTS	GRCm38
GRCm38	6	87,999,999 - 88,000,498	UniSTS	GRCm38
MGSCv37	9	54,672,026 - 54,672,530	UniSTS	GRCm37
MGSCv37	6	87,949,993 - 87,950,492	UniSTS	GRCm37
Celera	6	89,936,925 - 89,937,424	UniSTS
Celera	9	52,068,641 - 52,069,145	UniSTS
Cytogenetic Map	9	B	UniSTS
Cytogenetic Map	6	D1	UniSTS
cM Map	9	32.0	UniSTS
cM Map	6	38.5	UniSTS

RH126941

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	88,029,845 - 88,030,079	UniSTS	GRCm38
MGSCv37	6	87,979,839 - 87,980,073	UniSTS	GRCm37
Celera	6	89,966,843 - 89,967,077	UniSTS
Cytogenetic Map	6	D1	UniSTS
cM Map	6	38.0	UniSTS
Whitehead/MRC_RH	6	909.82	UniSTS

UniSTS:225345

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	88,000,150 - 88,000,329	UniSTS	GRCm38
MGSCv37	6	87,950,144 - 87,950,323	UniSTS	GRCm37
Celera	6	89,937,076 - 89,937,255	UniSTS
Cytogenetic Map	6	D1	UniSTS
cM Map	6	38.5	UniSTS

Rab7

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	88,045,086 - 88,045,322	UniSTS	GRCm38
MGSCv37	6	87,995,080 - 87,995,316	UniSTS	GRCm37
Celera	6	89,982,103 - 89,982,339	UniSTS
Cytogenetic Map	6	D1	UniSTS
cM Map	6	38.5	UniSTS

Rab7-ps1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	9	54,824,064 - 54,824,290	UniSTS	GRCm38
GRCm38	6	87,999,844 - 88,000,072	UniSTS	GRCm38
MGSCv37	6	87,949,838 - 87,950,066	UniSTS	GRCm37
MGSCv37	9	54,671,871 - 54,672,097	UniSTS	GRCm37
Celera	9	52,068,486 - 52,068,712	UniSTS
Celera	6	89,936,770 - 89,936,998	UniSTS
Cytogenetic Map	9	B	UniSTS
Cytogenetic Map	6	D1	UniSTS
cM Map	9	32.0	UniSTS

RAB7A

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	9	54,824,840 - 54,824,917	UniSTS	GRCm38
GRCm38	6	88,004,255 - 88,005,025	UniSTS	GRCm38
MGSCv37	6	87,954,249 - 87,955,019	UniSTS	GRCm37
MGSCv37	9	54,672,647 - 54,672,724	UniSTS	GRCm37
Celera	9	52,069,262 - 52,069,339	UniSTS
Celera	6	89,941,181 - 89,941,951	UniSTS
Cytogenetic Map	6	D1	UniSTS
Cytogenetic Map	9	B	UniSTS
cM Map	9	32.0	UniSTS
cM Map	6	38.5	UniSTS

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
25440480	Moaq2_m	modifier of alien QTL 2 (mouse)					6	3050001	117476961	Mouse
26884414	Bzwq12_m	bi-zygomatic width QTL 12, 16 week (mouse)					6	3400000	139076998	Mouse
4142271	Egq8_m	early growth QTL 8 (mouse)			Not determined			4503823	96633110	Mouse
4142232	W6q4_m	weight 6 weeks QTL 4 (mouse)			Not determined			4503823	96633110	Mouse
4142126	W3q3_m	weight 3 weeks QTL 3 (mouse)			Not determined			4503823	96633110	Mouse
4142361	W10q11_m	weight 10 weeks QTL 11 (mouse)			Not determined			4503823	96633110	Mouse
1558984	Cplaq9_m	circadian period of locomotor activity 9 (mouse)			Not determined		6	38646560	92584431	Mouse
10412157	Fl1n_m	fatty liver 1 in NSY (mouse)			Not determined		6	45290993	128811995	Mouse
4142259	Tabw2_m	tally ho associated body weight 2 (mouse)			Not determined			46912919	136400690	Mouse
25314319	Histh6_m	histamine hypersensitivity 6 (mouse)					6	48696934	125336963	Mouse
25314320	Histh5_m	histamine hypersensitivity 5 (mouse)					6	48696934	148351498	Mouse
1301962	Eila2_m	ethanol induced locomotor activity 2 (mouse)			Not determined		6	48703490	125333748	Mouse
1357683	Igf1sl1_m	IGF-1 serum levels 1 (mouse)			Not determined		6	52138693	116132228	Mouse
4141028	Mclr_m	methylcholanthrene lymphoma resistance (mouse)			Not determined			54350411	88356155	Mouse
15039373	Adip28_m	adiposity 28 (mouse)					6	56285194	90285194	Mouse
15039375	Bw41_m	body weight QTL 41 (mouse)					6	56285194	90285194	Mouse
1558977	Skmw10_m	skeletal muscle weight 10 (mouse)			Not determined		6	58424566	92424693	Mouse
10043972	Obq28_m	obesity QTL 28 (mouse)			Not determined		6	58517416	92517416	Mouse
10412119	Stv_m	striatal volumne (mouse)			Not determined		6	60026991	100026967	Mouse
1301740	Bwq2_m	body weight QTL 2 (mouse)			Not determined		6	60034663	94034782	Mouse
1301369	Im4_m	immunoregulatory 4 (mouse)			Not determined		6	63461721	97461888	Mouse
1300650	Bw18_m	body weight QTL 18 (mouse)			Not determined		6	66690851	100691013	Mouse
1301813	Skl3_m	skeletal size (tail length) 3 (mouse)			Not determined		6	70402880	104403016	Mouse
1301034	Egrm2_m	early growth rate (mouse)			Not determined		6	70402880	104403016	Mouse
1301876	Bits2_m	bitterness sensitivity 2 (mouse)			Not determined		6	70402880	104403016	Mouse
1302020	Bbaa20_m	B.burgdorferi-associated arthritis 20 (mouse)			Not determined		6	71299605	93441074	Mouse
1300869	Stheal5_m	soft tissue heal 5 (mouse)			Not determined		6	71552042	105552160	Mouse
1301521	Pas1c_m	pulmonary adenoma susceptibility 1c (mouse)			Not determined		6	71958006	105958152	Mouse
1300954	Fcsa1_m	femoral cross-sectional area 1 (mouse)			Not determined		6	71958006	105958152	Mouse
13506930	Recrq9_m	recombination rate in male meiosis QTL 9 (mouse)					6	73476983	134676963	Mouse
12792979	Fbmd2_m	femoral bone mineral density 2, females only (mouse)					6	75026989	115026943	Mouse
1301320	Ots1_m	ovarian teratoma susceptibility 1 (mouse)			Not determined		6	75424566	104480516	Mouse
1301571	Arrd1_m	age-related retinal degeneration 1 (mouse)			Not determined		6	75521339	92584431	Mouse
10412195	Efw_m	epididymal fat weight (mouse)			Not determined		6	75521339	94202936	Mouse
1300674	Nidd3n_m	non-insulin-dependent diabetes mellitus 3 in NSY (mouse)			Not determined		6	75521339	94202936	Mouse
10043901	Pfat5_m	predicted fat percentage 5 (mouse)			Not determined		6	75584287	109584431	Mouse
10412208	Cypr4_m	cytokine production 4 (mouse)			Not determined		6	75693484	109693678	Mouse
1357875	Pfat2_m	predicted fat percentage 2 (mouse)			Not determined		6	76440930	110441074	Mouse
14697704	Stsl4_m	Salmonella typhimurium susceptibility locus 4 (mouse)					6	77076983	89976982	Mouse
13824985	Alh1_m	amplitude of lateral head displacement 1 (mouse)					6	77976983	96976961	Mouse
4141376	Dbm1_m	diabetes modifier 1 (mouse)			Not determined		6	78606487	121092347	Mouse
14696731	Pairq1_m	P. aeruginosa infection resistance QTL 1 (mouse)					6	81476981	102176961	Mouse
10043864	T2dm4sa_m	type 2 diabetes mellitus 4 in SMXA RI mice (mouse)			Not determined		6	83690851	146954059	Mouse
11251720	Ewc4_m	ethanol withdrawal and consumption 4 (mouse)					6	84099474	118099474	Mouse
1301687	Mnic2_m	macronutrient intake (mouse)			Not determined		6	86783787	113521563	Mouse
1301744	Hdlq11_m	HDL QTL 11 (mouse)			Not determined		6	87480321	121480516	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1943
Count of miRNA genes:	389
Interacting mature miRNAs:	470
Transcripts:	ENSMUST00000095048, ENSMUST00000113596, ENSMUST00000113597, ENSMUST00000113598, ENSMUST00000113600
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001293652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001293653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001293654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001293655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_009005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB232599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC153857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC153872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK005004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK057671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK135659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK139914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK148117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK151078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK152666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK154234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK158971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK159507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK159928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK178672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK179526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK183086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK190348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK195608	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK197221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK197526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK200175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK200812	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK203105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC004597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC086793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY291181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CD774636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CT010352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X89650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Y13362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000095048 ⟹ ENSMUSP00000092658

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	87,976,922 - 87,996,765 (-)	Ensembl
GRCm38.p6 Ensembl	6	87,999,940 - 88,019,783 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000113596 ⟹ ENSMUSP00000109226

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	87,976,787 - 88,022,227 (-)	Ensembl
GRCm38.p6 Ensembl	6	87,999,805 - 88,045,245 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000113597 ⟹ ENSMUSP00000109227

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	87,976,425 - 87,996,765 (-)	Ensembl
GRCm38.p6 Ensembl	6	87,999,443 - 88,019,783 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000113598 ⟹ ENSMUSP00000109228

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	87,976,099 - 88,021,999 (-)	Ensembl
GRCm38.p6 Ensembl	6	87,999,117 - 88,045,017 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000113600 ⟹ ENSMUSP00000109230

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	87,976,088 - 88,022,252 (-)	Ensembl
GRCm38.p6 Ensembl	6	87,999,106 - 88,045,270 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000203674 ⟹ ENSMUSP00000145215

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	87,977,346 - 88,022,180 (-)	Ensembl
GRCm38.p6 Ensembl	6	88,000,364 - 88,045,198 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000204126 ⟹ ENSMUSP00000145097

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	87,982,078 - 88,022,213 (-)	Ensembl
GRCm38.p6 Ensembl	6	88,005,096 - 88,045,231 (-)	Ensembl

RefSeq Acc Id:

NM_001293652 ⟹ NP_001280581

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	87,976,088 - 88,022,252 (-)	NCBI
GRCm38	6	87,999,106 - 88,045,270 (-)	NCBI
Celera	6	89,936,032 - 89,982,287 (-)	NCBI

Sequence:

show sequence

GTCTCGTGACAGACACTTCCGCTCGGGGCGGCGGCGGTGGCGGAAGTGGAAGCAAGGCCGGAGC
TTTGACCATAAAGCCCAAGGCGGCGGCGTTGGCGGCGGTGTTTGGGGCCGGGCAGCTCCGAGGA
GCCTGCTGGAGCCGGAATCGGACGTCTCTGTTGCGGCCTGCGTTGTGTCTCCTCCTCCGTTGAC
CCTGCGGCTTTAGGACCGGGGATTGAGCTCAGGTCATCAGGTTTGGAGGCAAGAGCCCTTATCT
GCTGAGCCATCTCACTGACCCCAGAGACAACGGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGA
ACTCACTCTGTAGACCACGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCGGAGTGC
TGGGATCAAAGGCGTGCACCACCACGCCCGGCCTATCTTCAAGGATGACCTCTAGGAAGAAAGT
GTTGCTGAAGGTCATCATCCTGGGGGACTCTGGTGTTGGAAAGACCTCTCTCATGAACCAGTAT
GTGAACAAGAAGTTCAGTAACCAGTACAAAGCCACAATAGGAGCGGACTTTCTGACCAAGGAGG
TGATGGTGGACGACAGACTTGTTACCATGCAGATCTGGGACACAGCCGGTCAAGAACGGTTCCA
GTCTCTTGGTGTGGCCTTCTACAGAGGTGCAGATTGCTGTGTTCTGGTGTTTGATGTGACTGCC
CCCAACACTTTCAAAACCCTCGACAGCTGGAGAGACGAGTTTCTCATCCAGGCCAGCCCCCGGG
ATCCCGAGAACTTCCCTTTTGTTGTGTTGGGAAACAAGATTGACCTGGAAAACAGACAAGTGGC
CACAAAGAGGGCACAGGCTTGGTGCTACAGCAAAAACAACATTCCTTACTTCGAGACCAGTGCC
AAGGAGGCCATCAATGTGGAGCAGGCCTTCCAGACAATTGCTCGGAATGCCCTTAAACAGGAAA
CAGAAGTGGAACTGTACAATGAATTCCCTGAACCCATCAAACTGGACAAGAATGACCGGGCCAA
GGCCTCCGCAGAAAGCTGCAGTTGTTGAAGGGGCAGTGAGCACAGAGTCCTTCACAGACCAAGA
ACACACACGTAGGCCTTCAATATGCGTCCCTCCTCCTCCAAACAGACCAGAACGTGAGCTCTCA
CATCCAGCTGCCAAAAGAAACTCCACCGAACAGTTACCCAACACACACACATACACAAAACACA
CTCGTGCACACAAAAACACATACACACAACACACACACAGCAAGCAAACTCCAGCCTGTGCCTG
TCAGGGCTCCTGGGGCAGCTGCCCGCCTCGTGGGCCCTGTGTATGGCAGGCATATGGCAGAGAC
CCTGGGTGCTCTGGGGTGCAGTGGGCATGGAAAGCTTACTCTTTTTGTCCACTGGAGAGTGAGA
GAACTGTTCACAGTTCATCTGTGTCTAATTATCTGATTTTTTTTTTAACGGTCTTGTGGTCTTT
TACCCCTCCCTCCTTGAAGGTCCTGTGGGAAGGCTGGTGCCCAGGCTCCGTTCTGAGCAGGCTG
TTTTGTATGTATCTGTTAATGCTTGTTACTTTTAACTAATCAGATCTTTTTACAGTATCCATTT
ATTATGTAATGCTTCTTAGAAAAGAATCTTATAGTACATGTTAATATATGCAACCAATTAAAAT
GTATAAATTAGTGTAAGGAATTCCTGGATTGTGTGTTTAAGTCCTCTAACGCAGGCGTGCAAGG
TGGAGGGTTGAACCCTGTCTGGATTACAGAGTGTTAGAGACTCAAGTTTGGAAGTCCAGCTAGC
GGCAGTATTCTGTACAGTAGACACAAGAATTATGTACGCCTTTTATCACAGACTTAAGAGCCAA
AAAGCTTTTCATCTCTCTGAAGGGAAAACTGAACTAGACAGTTCCCTTCTGTGTCTAAATTTTC
CAAAAGGTTGATTTGCTTAATATAGTAGTGTATACAATGGATAAATTGCTGTTACTTCAAGAAT
TAAAATTCTCATTTTCTCCCTTTCTGTTTTTTTTCCTTATATTCAACACTTTATGATGCCCTTT
TGTCACTATCCTACTCAAAGAGGAAAGGAGAACCCACCAGACCTGTCCCAGTGACTCTACCTTT
GTTCTAGAAGGCGCTCCTTTCAGGGTTGTGGTACCTGTAGGTTAGCAGACCCTCCTCCTTTCCC
ACCCACCCAAGTGTGGCCCAGCACTAACCCACCGTCTCTTGGGTTGAGCCCTGGCAGTTCTGTC
CCTTCCCGAGGTCCTGCCCTGCATCATGGCTTGCTTCCTGGAGCACTTCCCCTTCAGAGGTCTA
CATTCTAGGGTGTAGGCTGAGTTCTTCTGTAAAGAGACGAACGTGATGCCAATAAAATTTAACA
AGAACAAAGAACAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001293653 ⟹ NP_001280582

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	87,976,088 - 88,021,999 (-)	NCBI
GRCm38	6	87,999,106 - 88,045,017 (-)	NCBI
Celera	6	89,936,032 - 89,982,287 (-)	NCBI

Sequence:

show sequence

GGCGTCCTCGGCGAGCCGAGCGCCGAGCTGGGCCGGGCCAGGCGGGGCGGCGCCCGGCGGGCGG
AGGGCGATCGGCGATCGCTTCAAGGATGACCTCTAGGAAGAAAGTGTTGCTGAAGGTCATCATC
CTGGGGGACTCTGGTGTTGGAAAGACCTCTCTCATGAACCAGTATGTGAACAAGAAGTTCAGTA
ACCAGTACAAAGCCACAATAGGAGCGGACTTTCTGACCAAGGAGGTGATGGTGGACGACAGACT
TGTTACCATGCAGATCTGGGACACAGCCGGTCAAGAACGGTTCCAGTCTCTTGGTGTGGCCTTC
TACAGAGGTGCAGATTGCTGTGTTCTGGTGTTTGATGTGACTGCCCCCAACACTTTCAAAACCC
TCGACAGCTGGAGAGACGAGTTTCTCATCCAGGCCAGCCCCCGGGATCCCGAGAACTTCCCTTT
TGTTGTGTTGGGAAACAAGATTGACCTGGAAAACAGACAAGTGGCCACAAAGAGGGCACAGGCT
TGGTGCTACAGCAAAAACAACATTCCTTACTTCGAGACCAGTGCCAAGGAGGCCATCAATGTGG
AGCAGGCCTTCCAGACAATTGCTCGGAATGCCCTTAAACAGGAAACAGAAGTGGAACTGTACAA
TGAATTCCCTGAACCCATCAAACTGGACAAGAATGACCGGGCCAAGGCCTCCGCAGAAAGCTGC
AGTTGTTGAAGGGGCAGTGAGCACAGAGTCCTTCACAGACCAAGAACACACACGTAGGCCTTCA
ATATGCGTCCCTCCTCCTCCAAACAGACCAGAACGTGAGCTCTCACATCCAGCTGCCAAAAGAA
ACTCCACCGAACAGTTACCCAACACACACACATACACAAAACACACTCGTGCACACAAAAACAC
ATACACACAACACACACACAGCAAGCAAACTCCAGCCTGTGCCTGTCAGGGCTCCTGGGGCAGC
TGCCCGCCTCGTGGGCCCTGTGTATGGCAGGCATATGGCAGAGACCCTGGGTGCTCTGGGGTGC
AGTGGGCATGGAAAGCTTACTCTTTTTGTCCACTGGAGAGTGAGAGAACTGTTCACAGTTCATC
TGTGTCTAATTATCTGATTTTTTTTTTAACGGTCTTGTGGTCTTTTACCCCTCCCTCCTTGAAG
GTCCTGTGGGAAGGCTGGTGCCCAGGCTCCGTTCTGAGCAGGCTGTTTTGTATGTATCTGTTAA
TGCTTGTTACTTTTAACTAATCAGATCTTTTTACAGTATCCATTTATTATGTAATGCTTCTTAG
AAAAGAATCTTATAGTACATGTTAATATATGCAACCAATTAAAATGTATAAATTAGTGTAAGGA
ATTCCTGGATTGTGTGTTTAAGTCCTCTAACGCAGGCGTGCAAGGTGGAGGGTTGAACCCTGTC
TGGATTACAGAGTGTTAGAGACTCAAGTTTGGAAGTCCAGCTAGCGGCAGTATTCTGTACAGTA
GACACAAGAATTATGTACGCCTTTTATCACAGACTTAAGAGCCAAAAAGCTTTTCATCTCTCTG
AAGGGAAAACTGAACTAGACAGTTCCCTTCTGTGTCTAAATTTTCCAAAAGGTTGATTTGCTTA
ATATAGTAGTGTATACAATGGATAAATTGCTGTTACTTCAAGAATTAAAATTCTCATTTTCTCC
CTTTCTGTTTTTTTTCCTTATATTCAACACTTTATGATGCCCTTTTGTCACTATCCTACTCAAA
GAGGAAAGGAGAACCCACCAGACCTGTCCCAGTGACTCTACCTTTGTTCTAGAAGGCGCTCCTT
TCAGGGTTGTGGTACCTGTAGGTTAGCAGACCCTCCTCCTTTCCCACCCACCCAAGTGTGGCCC
AGCACTAACCCACCGTCTCTTGGGTTGAGCCCTGGCAGTTCTGTCCCTTCCCGAGGTCCTGCCC
TGCATCATGGCTTGCTTCCTGGAGCACTTCCCCTTCAGAGGTCTACATTCTAGGGTGTAGGCTG
AGTTCTTCTGTAAAGAGACGAACGTGATGCCAATAAAATTTAACAAGAACAAAGAACAAAAAAA
AAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001293654 ⟹ NP_001280583

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	87,976,088 - 87,996,777 (-)	NCBI
GRCm38	6	87,999,106 - 88,019,795 (-)	NCBI
Celera	6	89,936,032 - 89,982,287 (-)	NCBI

Sequence:

show sequence

GATTTGGCAACTGTTCTCACCGGGAACGGCAACGTGGCTGGCTTTCTGGCACACTCTTAGAGTT
TTGGGCTATTCCACCTTCTCTCTCAAGCTCCATCGTGTGCAGTAGCACCTCAGTTGCCCAGGTA
CAGGAAAGGCCCCGGAAGGTTGGAAAGTGGAGGCTTTAGGACCGGGGATTGAGCTCAGGTCATC
AGGTTTGGAGGCAAGAGCCCTTATCTGCTGAGCCATCTCACTGACCCCAGAGACACTTCAAGGA
TGACCTCTAGGAAGAAAGTGTTGCTGAAGGTCATCATCCTGGGGGACTCTGGTGTTGGAAAGAC
CTCTCTCATGAACCAGTATGTGAACAAGAAGTTCAGTAACCAGTACAAAGCCACAATAGGAGCG
GACTTTCTGACCAAGGAGGTGATGGTGGACGACAGACTTGTTACCATGCAGATCTGGGACACAG
CCGGTCAAGAACGGTTCCAGTCTCTTGGTGTGGCCTTCTACAGAGGTGCAGATTGCTGTGTTCT
GGTGTTTGATGTGACTGCCCCCAACACTTTCAAAACCCTCGACAGCTGGAGAGACGAGTTTCTC
ATCCAGGCCAGCCCCCGGGATCCCGAGAACTTCCCTTTTGTTGTGTTGGGAAACAAGATTGACC
TGGAAAACAGACAAGTGGCCACAAAGAGGGCACAGGCTTGGTGCTACAGCAAAAACAACATTCC
TTACTTCGAGACCAGTGCCAAGGAGGCCATCAATGTGGAGCAGGCCTTCCAGACAATTGCTCGG
AATGCCCTTAAACAGGAAACAGAAGTGGAACTGTACAATGAATTCCCTGAACCCATCAAACTGG
ACAAGAATGACCGGGCCAAGGCCTCCGCAGAAAGCTGCAGTTGTTGAAGGGGCAGTGAGCACAG
AGTCCTTCACAGACCAAGAACACACACGTAGGCCTTCAATATGCGTCCCTCCTCCTCCAAACAG
ACCAGAACGTGAGCTCTCACATCCAGCTGCCAAAAGAAACTCCACCGAACAGTTACCCAACACA
CACACATACACAAAACACACTCGTGCACACAAAAACACATACACACAACACACACACAGCAAGC
AAACTCCAGCCTGTGCCTGTCAGGGCTCCTGGGGCAGCTGCCCGCCTCGTGGGCCCTGTGTATG
GCAGGCATATGGCAGAGACCCTGGGTGCTCTGGGGTGCAGTGGGCATGGAAAGCTTACTCTTTT
TGTCCACTGGAGAGTGAGAGAACTGTTCACAGTTCATCTGTGTCTAATTATCTGATTTTTTTTT
TAACGGTCTTGTGGTCTTTTACCCCTCCCTCCTTGAAGGTCCTGTGGGAAGGCTGGTGCCCAGG
CTCCGTTCTGAGCAGGCTGTTTTGTATGTATCTGTTAATGCTTGTTACTTTTAACTAATCAGAT
CTTTTTACAGTATCCATTTATTATGTAATGCTTCTTAGAAAAGAATCTTATAGTACATGTTAAT
ATATGCAACCAATTAAAATGTATAAATTAGTGTAAGGAATTCCTGGATTGTGTGTTTAAGTCCT
CTAACGCAGGCGTGCAAGGTGGAGGGTTGAACCCTGTCTGGATTACAGAGTGTTAGAGACTCAA
GTTTGGAAGTCCAGCTAGCGGCAGTATTCTGTACAGTAGACACAAGAATTATGTACGCCTTTTA
TCACAGACTTAAGAGCCAAAAAGCTTTTCATCTCTCTGAAGGGAAAACTGAACTAGACAGTTCC
CTTCTGTGTCTAAATTTTCCAAAAGGTTGATTTGCTTAATATAGTAGTGTATACAATGGATAAA
TTGCTGTTACTTCAAGAATTAAAATTCTCATTTTCTCCCTTTCTGTTTTTTTTCCTTATATTCA
ACACTTTATGATGCCCTTTTGTCACTATCCTACTCAAAGAGGAAAGGAGAACCCACCAGACCTG
TCCCAGTGACTCTACCTTTGTTCTAGAAGGCGCTCCTTTCAGGGTTGTGGTACCTGTAGGTTAG
CAGACCCTCCTCCTTTCCCACCCACCCAAGTGTGGCCCAGCACTAACCCACCGTCTCTTGGGTT
GAGCCCTGGCAGTTCTGTCCCTTCCCGAGGTCCTGCCCTGCATCATGGCTTGCTTCCTGGAGCA
CTTCCCCTTCAGAGGTCTACATTCTAGGGTGTAGGCTGAGTTCTTCTGTAAAGAGACGAACGTG
ATGCCAATAAAATTTAACAAGAACAAAGAACAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001293655 ⟹ NP_001280584

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	87,976,088 - 87,996,777 (-)	NCBI
GRCm38	6	87,999,106 - 88,019,795 (-)	NCBI
Celera	6	89,936,032 - 89,982,287 (-)	NCBI

Sequence:

show sequence

GATTTGGCAACTGTTCTCACCGGGAACGGCAACGTGGCTGGCTTTCTGGCACACTCTTAGAGTT
TTGGGCTATTCCACCTTCTCTCTCAAGCTCCATCGTGTGCAGTAGCACCTCAGTTGCCCAGGTA
CAGGAAAGGCCCCGGAAGGTTGGAAAGTGGAGCTTCAAGGATGACCTCTAGGAAGAAAGTGTTG
CTGAAGGTCATCATCCTGGGGGACTCTGGTGTTGGAAAGACCTCTCTCATGAACCAGTATGTGA
ACAAGAAGTTCAGTAACCAGTACAAAGCCACAATAGGAGCGGACTTTCTGACCAAGGAGGTGAT
GGTGGACGACAGACTTGTTACCATGCAGATCTGGGACACAGCCGGTCAAGAACGGTTCCAGTCT
CTTGGTGTGGCCTTCTACAGAGGTGCAGATTGCTGTGTTCTGGTGTTTGATGTGACTGCCCCCA
ACACTTTCAAAACCCTCGACAGCTGGAGAGACGAGTTTCTCATCCAGGCCAGCCCCCGGGATCC
CGAGAACTTCCCTTTTGTTGTGTTGGGAAACAAGATTGACCTGGAAAACAGACAAGTGGCCACA
AAGAGGGCACAGGCTTGGTGCTACAGCAAAAACAACATTCCTTACTTCGAGACCAGTGCCAAGG
AGGCCATCAATGTGGAGCAGGCCTTCCAGACAATTGCTCGGAATGCCCTTAAACAGGAAACAGA
AGTGGAACTGTACAATGAATTCCCTGAACCCATCAAACTGGACAAGAATGACCGGGCCAAGGCC
TCCGCAGAAAGCTGCAGTTGTTGAAGGGGCAGTGAGCACAGAGTCCTTCACAGACCAAGAACAC
ACACGTAGGCCTTCAATATGCGTCCCTCCTCCTCCAAACAGACCAGAACGTGAGCTCTCACATC
CAGCTGCCAAAAGAAACTCCACCGAACAGTTACCCAACACACACACATACACAAAACACACTCG
TGCACACAAAAACACATACACACAACACACACACAGCAAGCAAACTCCAGCCTGTGCCTGTCAG
GGCTCCTGGGGCAGCTGCCCGCCTCGTGGGCCCTGTGTATGGCAGGCATATGGCAGAGACCCTG
GGTGCTCTGGGGTGCAGTGGGCATGGAAAGCTTACTCTTTTTGTCCACTGGAGAGTGAGAGAAC
TGTTCACAGTTCATCTGTGTCTAATTATCTGATTTTTTTTTTAACGGTCTTGTGGTCTTTTACC
CCTCCCTCCTTGAAGGTCCTGTGGGAAGGCTGGTGCCCAGGCTCCGTTCTGAGCAGGCTGTTTT
GTATGTATCTGTTAATGCTTGTTACTTTTAACTAATCAGATCTTTTTACAGTATCCATTTATTA
TGTAATGCTTCTTAGAAAAGAATCTTATAGTACATGTTAATATATGCAACCAATTAAAATGTAT
AAATTAGTGTAAGGAATTCCTGGATTGTGTGTTTAAGTCCTCTAACGCAGGCGTGCAAGGTGGA
GGGTTGAACCCTGTCTGGATTACAGAGTGTTAGAGACTCAAGTTTGGAAGTCCAGCTAGCGGCA
GTATTCTGTACAGTAGACACAAGAATTATGTACGCCTTTTATCACAGACTTAAGAGCCAAAAAG
CTTTTCATCTCTCTGAAGGGAAAACTGAACTAGACAGTTCCCTTCTGTGTCTAAATTTTCCAAA
AGGTTGATTTGCTTAATATAGTAGTGTATACAATGGATAAATTGCTGTTACTTCAAGAATTAAA
ATTCTCATTTTCTCCCTTTCTGTTTTTTTTCCTTATATTCAACACTTTATGATGCCCTTTTGTC
ACTATCCTACTCAAAGAGGAAAGGAGAACCCACCAGACCTGTCCCAGTGACTCTACCTTTGTTC
TAGAAGGCGCTCCTTTCAGGGTTGTGGTACCTGTAGGTTAGCAGACCCTCCTCCTTTCCCACCC
ACCCAAGTGTGGCCCAGCACTAACCCACCGTCTCTTGGGTTGAGCCCTGGCAGTTCTGTCCCTT
CCCGAGGTCCTGCCCTGCATCATGGCTTGCTTCCTGGAGCACTTCCCCTTCAGAGGTCTACATT
CTAGGGTGTAGGCTGAGTTCTTCTGTAAAGAGACGAACGTGATGCCAATAAAATTTAACAAGAA
CAAAGAACAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_009005 ⟹ NP_033031

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	87,976,088 - 88,022,252 (-)	NCBI
GRCm38	6	87,999,106 - 88,045,270 (-)	NCBI
MGSCv37	6	87,950,429 - 87,963,684 (-)	RGD
Celera	6	89,936,032 - 89,982,287 (-)	NCBI
cM Map	6		ENTREZGENE

Sequence:

show sequence

GTCTCGTGACAGACACTTCCGCTCGGGGCGGCGGCGGTGGCGGAAGTGGAAGCAAGGCCGGAGC
TTTGACCATAAAGCCCAAGGCGGCGGCGTTGGCGGCGGTGTTTGGGGCCGGGCAGCTCCGAGGA
GCCTGCTGGAGCCGGAATCGGACGTCTCTGTTGCGGCCTGCGTTGTGTCTCCTCCTCCGTTGAC
CCTGCGCTTCAAGGATGACCTCTAGGAAGAAAGTGTTGCTGAAGGTCATCATCCTGGGGGACTC
TGGTGTTGGAAAGACCTCTCTCATGAACCAGTATGTGAACAAGAAGTTCAGTAACCAGTACAAA
GCCACAATAGGAGCGGACTTTCTGACCAAGGAGGTGATGGTGGACGACAGACTTGTTACCATGC
AGATCTGGGACACAGCCGGTCAAGAACGGTTCCAGTCTCTTGGTGTGGCCTTCTACAGAGGTGC
AGATTGCTGTGTTCTGGTGTTTGATGTGACTGCCCCCAACACTTTCAAAACCCTCGACAGCTGG
AGAGACGAGTTTCTCATCCAGGCCAGCCCCCGGGATCCCGAGAACTTCCCTTTTGTTGTGTTGG
GAAACAAGATTGACCTGGAAAACAGACAAGTGGCCACAAAGAGGGCACAGGCTTGGTGCTACAG
CAAAAACAACATTCCTTACTTCGAGACCAGTGCCAAGGAGGCCATCAATGTGGAGCAGGCCTTC
CAGACAATTGCTCGGAATGCCCTTAAACAGGAAACAGAAGTGGAACTGTACAATGAATTCCCTG
AACCCATCAAACTGGACAAGAATGACCGGGCCAAGGCCTCCGCAGAAAGCTGCAGTTGTTGAAG
GGGCAGTGAGCACAGAGTCCTTCACAGACCAAGAACACACACGTAGGCCTTCAATATGCGTCCC
TCCTCCTCCAAACAGACCAGAACGTGAGCTCTCACATCCAGCTGCCAAAAGAAACTCCACCGAA
CAGTTACCCAACACACACACATACACAAAACACACTCGTGCACACAAAAACACATACACACAAC
ACACACACAGCAAGCAAACTCCAGCCTGTGCCTGTCAGGGCTCCTGGGGCAGCTGCCCGCCTCG
TGGGCCCTGTGTATGGCAGGCATATGGCAGAGACCCTGGGTGCTCTGGGGTGCAGTGGGCATGG
AAAGCTTACTCTTTTTGTCCACTGGAGAGTGAGAGAACTGTTCACAGTTCATCTGTGTCTAATT
ATCTGATTTTTTTTTTAACGGTCTTGTGGTCTTTTACCCCTCCCTCCTTGAAGGTCCTGTGGGA
AGGCTGGTGCCCAGGCTCCGTTCTGAGCAGGCTGTTTTGTATGTATCTGTTAATGCTTGTTACT
TTTAACTAATCAGATCTTTTTACAGTATCCATTTATTATGTAATGCTTCTTAGAAAAGAATCTT
ATAGTACATGTTAATATATGCAACCAATTAAAATGTATAAATTAGTGTAAGGAATTCCTGGATT
GTGTGTTTAAGTCCTCTAACGCAGGCGTGCAAGGTGGAGGGTTGAACCCTGTCTGGATTACAGA
GTGTTAGAGACTCAAGTTTGGAAGTCCAGCTAGCGGCAGTATTCTGTACAGTAGACACAAGAAT
TATGTACGCCTTTTATCACAGACTTAAGAGCCAAAAAGCTTTTCATCTCTCTGAAGGGAAAACT
GAACTAGACAGTTCCCTTCTGTGTCTAAATTTTCCAAAAGGTTGATTTGCTTAATATAGTAGTG
TATACAATGGATAAATTGCTGTTACTTCAAGAATTAAAATTCTCATTTTCTCCCTTTCTGTTTT
TTTTCCTTATATTCAACACTTTATGATGCCCTTTTGTCACTATCCTACTCAAAGAGGAAAGGAG
AACCCACCAGACCTGTCCCAGTGACTCTACCTTTGTTCTAGAAGGCGCTCCTTTCAGGGTTGTG
GTACCTGTAGGTTAGCAGACCCTCCTCCTTTCCCACCCACCCAAGTGTGGCCCAGCACTAACCC
ACCGTCTCTTGGGTTGAGCCCTGGCAGTTCTGTCCCTTCCCGAGGTCCTGCCCTGCATCATGGC
TTGCTTCCTGGAGCACTTCCCCTTCAGAGGTCTACATTCTAGGGTGTAGGCTGAGTTCTTCTGT
AAAGAGACGAACGTGATGCCAATAAAATTTAACAAGAACAAAGAACAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001280581	(Get FASTA)	NCBI Sequence Viewer
	NP_001280582	(Get FASTA)	NCBI Sequence Viewer
	NP_001280583	(Get FASTA)	NCBI Sequence Viewer
	NP_001280584	(Get FASTA)	NCBI Sequence Viewer
	NP_033031	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH04597	(Get FASTA)	NCBI Sequence Viewer
	AAH86793	(Get FASTA)	NCBI Sequence Viewer
	BAB23738	(Get FASTA)	NCBI Sequence Viewer
	BAE24180	(Get FASTA)	NCBI Sequence Viewer
	BAE28355	(Get FASTA)	NCBI Sequence Viewer
	BAE30093	(Get FASTA)	NCBI Sequence Viewer
	BAE31401	(Get FASTA)	NCBI Sequence Viewer
	BAE32452	(Get FASTA)	NCBI Sequence Viewer
	BAE34750	(Get FASTA)	NCBI Sequence Viewer
	BAE35490	(Get FASTA)	NCBI Sequence Viewer
	BAF02861	(Get FASTA)	NCBI Sequence Viewer
	CAA61797	(Get FASTA)	NCBI Sequence Viewer
	CAJ18560	(Get FASTA)	NCBI Sequence Viewer
	EDK99239	(Get FASTA)	NCBI Sequence Viewer
	P51150	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_033031 ⟸ NM_009005

- UniProtKB:

P51150 (UniProtKB/Swiss-Prot), Q4FJQ0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT
AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID
LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKL
DKNDRAKASAESCSC

hide sequence

RefSeq Acc Id:

NP_001280581 ⟸ NM_001293652

- UniProtKB:

P51150 (UniProtKB/Swiss-Prot), Q4FJQ0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT
AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID
LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKL
DKNDRAKASAESCSC

hide sequence

RefSeq Acc Id:

NP_001280582 ⟸ NM_001293653

- UniProtKB:

P51150 (UniProtKB/Swiss-Prot), Q4FJQ0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT
AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID
LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKL
DKNDRAKASAESCSC

hide sequence

RefSeq Acc Id:

NP_001280584 ⟸ NM_001293655

- UniProtKB:

P51150 (UniProtKB/Swiss-Prot), Q4FJQ0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT
AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID
LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKL
DKNDRAKASAESCSC

hide sequence

RefSeq Acc Id:

NP_001280583 ⟸ NM_001293654

- UniProtKB:

P51150 (UniProtKB/Swiss-Prot), Q4FJQ0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT
AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID
LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKL
DKNDRAKASAESCSC

hide sequence

RefSeq Acc Id:

ENSMUSP00000145097 ⟸ ENSMUST00000204126

RefSeq Acc Id:

ENSMUSP00000145215 ⟸ ENSMUST00000203674

RefSeq Acc Id:

ENSMUSP00000109230 ⟸ ENSMUST00000113600

RefSeq Acc Id:

ENSMUSP00000109227 ⟸ ENSMUST00000113597

RefSeq Acc Id:

ENSMUSP00000109226 ⟸ ENSMUST00000113596

RefSeq Acc Id:

ENSMUSP00000109228 ⟸ ENSMUST00000113598

RefSeq Acc Id:

ENSMUSP00000092658 ⟸ ENSMUST00000095048

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P51150-F1-model_v2	AlphaFold	P51150	1-207	view protein structure

Promoters

RGD ID:

6838909

Promoter ID:

MM_KWN:46805

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_4Hour, Brain

Transcripts:

UC009CUU.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	87,950,369 - 87,950,869 (-)	MPROMDB

RGD ID:

6839820

Promoter ID:

MM_KWN:46806

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_4Hour, Kidney, Liver, MEF_B6

Transcripts:

UC009CUV.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	87,963,234 - 87,963,734 (-)	MPROMDB

RGD ID:

6839821

Promoter ID:

MM_KWN:46807

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_4Hour, Kidney

Transcripts:

UC009CUW.1, UC009CUX.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	87,969,496 - 87,970,472 (-)	MPROMDB

RGD ID:

6839818

Promoter ID:

MM_KWN:46809

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, Spleen

Transcripts:

ENSMUST00000113596, ENSMUST00000113598, OTTMUST00000060589

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	87,994,924 - 87,995,424 (-)	MPROMDB

RGD ID:

6890362

Promoter ID:

EPDNEW_M8632

Type:

initiation region

Name:

Rab7_1

Description:

Mus musculus RAB7, member RAS oncogene family , transcript variant2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	88,045,199 - 88,045,259	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:105068	AgrOrtholog
Ensembl Genes	ENSMUSG00000079477	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000092658	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000109226	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000109227	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000109228	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000109230	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000145097.2	UniProtKB/TrEMBL
	ENSMUSP00000145215.2	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000095048	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000113596	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000113597	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000113598	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000113600	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000203674.3	UniProtKB/TrEMBL
	ENSMUST00000204126.2	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	P-loop_NTPase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Small_GTP-bd_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Small_GTPase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:19349	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:105068	ENTREZGENE
NCBI Gene	19349	ENTREZGENE
Pfam	Ras	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Rab7	PhenoGen
PROSITE	RAB	UniProtKB/Swiss-Prot
	RAS	UniProtKB/TrEMBL
SMART	RHO	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs	small_GTP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0N4SVG9_MOUSE	UniProtKB/TrEMBL
	A0A0N4SVR6_MOUSE	UniProtKB/TrEMBL
	P51150	ENTREZGENE
	Q4FJQ0	ENTREZGENE, UniProtKB/TrEMBL
	RAB7A_MOUSE	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)