Rab7 (RAB7, member RAS oncogene family) - Rat Genome Database

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Gene: Rab7 (RAB7, member RAS oncogene family) Mus musculus
Analyze
Symbol: Rab7
Name: RAB7, member RAS oncogene family
RGD ID: 62201
MGI Page MGI
Description: Predicted to enable several functions, including guanyl ribonucleotide binding activity; retromer complex binding activity; and small GTPase binding activity. Involved in lipophagy. Acts upstream of or within with a positive effect on establishment of vesicle localization. Located in several cellular components, including late endosome membrane; lipid droplet; and phagophore assembly site membrane. Is extrinsic component of lysosome membrane. Is active in lysosome. Is expressed in limb mesenchyme and lung mesenchyme. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2B. Orthologous to human RAB7A (RAB7A, member RAS oncogene family).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC102153; Rab7a; ras-related protein Rab-7a
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm8475   Rab7-ps1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39687,976,088 - 88,022,252 (-)NCBIGRCm39mm39
GRCm39 Ensembl687,976,088 - 88,022,252 (-)Ensembl
GRCm38687,999,106 - 88,045,270 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,999,106 - 88,045,270 (-)EnsemblGRCm38mm10GRCm38
MGSCv37687,950,429 - 87,963,684 (-)NCBIGRCm37mm9NCBIm37
MGSCv36687,964,764 - 88,010,861 (-)NCBImm8
Celera689,937,361 - 89,950,664 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map639.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (EXP)
1,2-dimethylhydrazine  (EXP)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (ISO)
2-methoxyethanol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
acrylamide  (ISO)
alginic acid  (EXP)
alpha-hexachlorocyclohexane  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
bexarotene  (ISO)
bisphenol A  (ISO)
Brodifacoum  (ISO)
buspirone  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP,ISO)
caffeine  (EXP)
calcium atom  (ISO)
calcium(0)  (ISO)
carbon nanotube  (EXP)
chenodeoxycholic acid  (EXP)
chloropicrin  (ISO)
cholic acid  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
diarsenic trioxide  (ISO)
dimethylarsinic acid  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (EXP)
gentamycin  (ISO)
haloperidol  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
melatonin  (ISO)
methamphetamine  (ISO)
methidathion  (EXP)
N-acetyl-L-cysteine  (ISO)
N-hydroxy-PhIP  (ISO)
nefazodone  (ISO)
nickel atom  (ISO)
nicotine  (EXP)
paracetamol  (EXP)
phenylmercury acetate  (ISO)
piroxicam  (ISO)
resveratrol  (EXP,ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
taurocholic acid  (EXP)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
uranium atom  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78.
3. Overview of macroautophagy regulation in mammalian cells. Mehrpour M, etal., Cell Res. 2010 Jul;20(7):748-62. Epub 2010 Jun 15.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8521519   PMID:8547311   PMID:8889548   PMID:8954989   PMID:9585432   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11042173   PMID:11076861   PMID:11172003   PMID:11773082  
PMID:11856727   PMID:12054610   PMID:12477932   PMID:12520002   PMID:12545426   PMID:12640132   PMID:12904583   PMID:12972561   PMID:14610273   PMID:15078902   PMID:15328023   PMID:15340014  
PMID:15489334   PMID:15588329   PMID:15745951   PMID:15782199   PMID:15870394   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16763563   PMID:16923123   PMID:17046692   PMID:17287360  
PMID:17967808   PMID:18656450   PMID:18692022   PMID:18799693   PMID:18955491   PMID:19368996   PMID:19509052   PMID:19587007   PMID:19956673   PMID:20004763   PMID:20059953   PMID:20152176  
PMID:20236428   PMID:20363736   PMID:20645406   PMID:20943658   PMID:21248257   PMID:21267068   PMID:21327095   PMID:21438969   PMID:21604690   PMID:21677750   PMID:21683685   PMID:21770032  
PMID:21873635   PMID:22275436   PMID:22467241   PMID:22698281   PMID:22854957   PMID:22909026   PMID:22990867   PMID:23028046   PMID:23554936   PMID:23615463   PMID:23708524   PMID:24035762  
PMID:24334765   PMID:24457600   PMID:24549040   PMID:24586722   PMID:24760869   PMID:25063677   PMID:25127994   PMID:25592972   PMID:25735755   PMID:25740947   PMID:25774384   PMID:26465331  
PMID:26496610   PMID:26582200   PMID:26865414   PMID:27294511   PMID:27378698   PMID:27390154   PMID:27609571   PMID:27777970   PMID:27793976   PMID:27811335   PMID:28264927   PMID:28378742  
PMID:28465352   PMID:28588238   PMID:28671696   PMID:28860274   PMID:28924047   PMID:29158485   PMID:29381137   PMID:29712939   PMID:29907658   PMID:30135482   PMID:30201994   PMID:30550785  
PMID:30590051   PMID:30713523   PMID:30721447   PMID:30985297   PMID:31079930   PMID:31300538   PMID:31932498   PMID:32088968   PMID:32229179   PMID:32279353   PMID:32325033   PMID:32521258  
PMID:32543313   PMID:32968282   PMID:32978479   PMID:33340069   PMID:33677131   PMID:33846297   PMID:33966596   PMID:34028500   PMID:34309175   PMID:34530854   PMID:34588579  


Genomics

Comparative Map Data
Rab7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39687,976,088 - 88,022,252 (-)NCBIGRCm39mm39
GRCm39 Ensembl687,976,088 - 88,022,252 (-)Ensembl
GRCm38687,999,106 - 88,045,270 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,999,106 - 88,045,270 (-)EnsemblGRCm38mm10GRCm38
MGSCv37687,950,429 - 87,963,684 (-)NCBIGRCm37mm9NCBIm37
MGSCv36687,964,764 - 88,010,861 (-)NCBImm8
Celera689,937,361 - 89,950,664 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map639.13NCBI
RAB7A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383128,726,183 - 128,814,798 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl3128,693,669 - 128,825,942 (+)EnsemblGRCh38hg38GRCh38
GRCh373128,445,026 - 128,533,641 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363129,927,669 - 130,016,331 (+)NCBINCBI36hg18NCBI36
Build 343129,927,676 - 130,016,339NCBI
Celera3126,877,121 - 126,965,892 (+)NCBI
Cytogenetic Map3q21.3NCBI
HuRef3125,832,324 - 125,921,106 (+)NCBIHuRef
CHM1_13128,408,152 - 128,496,845 (+)NCBICHM1_1
T2T-CHM13v2.03131,470,839 - 131,559,516 (+)NCBI
Rab7a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24120,461,966 - 120,510,756 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl4120,461,963 - 120,506,889 (-)Ensembl
Rnor_6.04119,910,461 - 119,963,065 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4119,910,478 - 119,959,173 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04185,158,344 - 185,209,333 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44122,202,685 - 122,220,649 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14122,447,168 - 122,465,130 (-)NCBI
Celera4109,421,363 - 109,466,326 (-)NCBICelera
Cytogenetic Map4q34NCBI
Rab7a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542915,103,792 - 15,167,498 (-)NCBIChiLan1.0ChiLan1.0
RAB7A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13133,214,246 - 133,233,403 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v03125,784,604 - 125,873,051 (+)NCBIMhudiblu_PPA_v0panPan3
RAB7A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1202,704,716 - 2,776,518 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl202,704,752 - 2,826,636 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha202,792,411 - 2,812,258 (+)NCBI
ROS_Cfam_1.0202,724,992 - 2,797,106 (+)NCBI
ROS_Cfam_1.0 Ensembl202,725,012 - 2,798,427 (+)Ensembl
UMICH_Zoey_3.1202,496,060 - 2,515,882 (+)NCBI
UNSW_CanFamBas_1.0202,822,274 - 2,842,051 (+)NCBI
UU_Cfam_GSD_1.0202,783,313 - 2,803,191 (+)NCBI
Rab7a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494220,255,730 - 20,263,118 (-)NCBI
SpeTri2.0NW_004936798297,600 - 304,929 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB7A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1371,777,420 - 71,886,581 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11371,777,422 - 71,886,758 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21379,450,127 - 79,456,601 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB7A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12252,231,481 - 52,309,276 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2252,230,835 - 52,309,306 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041114,053,255 - 114,130,507 (+)NCBIVero_WHO_p1.0
Rab7a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462504256,517 - 112,612 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462504256,509 - 112,519 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
PMC124275P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38954,824,219 - 54,824,723UniSTSGRCm38
GRCm38687,999,999 - 88,000,498UniSTSGRCm38
MGSCv37954,672,026 - 54,672,530UniSTSGRCm37
MGSCv37687,949,993 - 87,950,492UniSTSGRCm37
Celera689,936,925 - 89,937,424UniSTS
Celera952,068,641 - 52,069,145UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map6D1UniSTS
cM Map932.0UniSTS
cM Map638.5UniSTS
RH126941  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38688,029,845 - 88,030,079UniSTSGRCm38
MGSCv37687,979,839 - 87,980,073UniSTSGRCm37
Celera689,966,843 - 89,967,077UniSTS
Cytogenetic Map6D1UniSTS
cM Map638.0UniSTS
Whitehead/MRC_RH6909.82UniSTS
UniSTS:225345  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38688,000,150 - 88,000,329UniSTSGRCm38
MGSCv37687,950,144 - 87,950,323UniSTSGRCm37
Celera689,937,076 - 89,937,255UniSTS
Cytogenetic Map6D1UniSTS
cM Map638.5UniSTS
Rab7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38688,045,086 - 88,045,322UniSTSGRCm38
MGSCv37687,995,080 - 87,995,316UniSTSGRCm37
Celera689,982,103 - 89,982,339UniSTS
Cytogenetic Map6D1UniSTS
cM Map638.5UniSTS
Rab7-ps1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38954,824,064 - 54,824,290UniSTSGRCm38
GRCm38687,999,844 - 88,000,072UniSTSGRCm38
MGSCv37687,949,838 - 87,950,066UniSTSGRCm37
MGSCv37954,671,871 - 54,672,097UniSTSGRCm37
Celera952,068,486 - 52,068,712UniSTS
Celera689,936,770 - 89,936,998UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map6D1UniSTS
cM Map932.0UniSTS
RAB7A  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38954,824,840 - 54,824,917UniSTSGRCm38
GRCm38688,004,255 - 88,005,025UniSTSGRCm38
MGSCv37687,954,249 - 87,955,019UniSTSGRCm37
MGSCv37954,672,647 - 54,672,724UniSTSGRCm37
Celera952,069,262 - 52,069,339UniSTS
Celera689,941,181 - 89,941,951UniSTS
Cytogenetic Map6D1UniSTS
Cytogenetic Map9BUniSTS
cM Map932.0UniSTS
cM Map638.5UniSTS


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652138693116132228Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5435041188356155Mouse
15039373Adip28_madiposity 28 (mouse)65628519490285194Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65628519490285194Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65842456692424693Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65851741692517416Mouse
10412119Stv_mstriatal volumne (mouse)Not determined660026991100026967Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66003466394034782Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66346172197461888Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666690851100691013Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670402880104403016Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670402880104403016Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670402880104403016Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67129960593441074Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671552042105552160Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671958006105958152Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671958006105958152Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
12792979Fbmd2_mfemoral bone mineral density 2, females only (mouse)675026989115026943Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675424566104480516Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67552133992584431Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67552133994202936Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67552133994202936Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675584287109584431Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675693484109693678Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676440930110441074Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67707698389976982Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67797698396976961Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678606487121092347Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681476981102176961Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684099474118099474Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686783787113521563Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687480321121480516Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1943
Count of miRNA genes:389
Interacting mature miRNAs:470
Transcripts:ENSMUST00000095048, ENSMUST00000113596, ENSMUST00000113597, ENSMUST00000113598, ENSMUST00000113600
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001293652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001293653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001293654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001293655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB232599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK057671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY291181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD774636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT010352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X89650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y13362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000095048   ⟹   ENSMUSP00000092658
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,976,922 - 87,996,765 (-)Ensembl
GRCm38.p6 Ensembl687,999,940 - 88,019,783 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113596   ⟹   ENSMUSP00000109226
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,976,787 - 88,022,227 (-)Ensembl
GRCm38.p6 Ensembl687,999,805 - 88,045,245 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113597   ⟹   ENSMUSP00000109227
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,976,425 - 87,996,765 (-)Ensembl
GRCm38.p6 Ensembl687,999,443 - 88,019,783 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113598   ⟹   ENSMUSP00000109228
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,976,099 - 88,021,999 (-)Ensembl
GRCm38.p6 Ensembl687,999,117 - 88,045,017 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113600   ⟹   ENSMUSP00000109230
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,976,088 - 88,022,252 (-)Ensembl
GRCm38.p6 Ensembl687,999,106 - 88,045,270 (-)Ensembl
RefSeq Acc Id: ENSMUST00000203674   ⟹   ENSMUSP00000145215
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,977,346 - 88,022,180 (-)Ensembl
GRCm38.p6 Ensembl688,000,364 - 88,045,198 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204126   ⟹   ENSMUSP00000145097
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,982,078 - 88,022,213 (-)Ensembl
GRCm38.p6 Ensembl688,005,096 - 88,045,231 (-)Ensembl
RefSeq Acc Id: NM_001293652   ⟹   NP_001280581
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,976,088 - 88,022,252 (-)NCBI
GRCm38687,999,106 - 88,045,270 (-)NCBI
Celera689,936,032 - 89,982,287 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001293653   ⟹   NP_001280582
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,976,088 - 88,021,999 (-)NCBI
GRCm38687,999,106 - 88,045,017 (-)NCBI
Celera689,936,032 - 89,982,287 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001293654   ⟹   NP_001280583
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,976,088 - 87,996,777 (-)NCBI
GRCm38687,999,106 - 88,019,795 (-)NCBI
Celera689,936,032 - 89,982,287 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001293655   ⟹   NP_001280584
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,976,088 - 87,996,777 (-)NCBI
GRCm38687,999,106 - 88,019,795 (-)NCBI
Celera689,936,032 - 89,982,287 (-)NCBI
Sequence:
RefSeq Acc Id: NM_009005   ⟹   NP_033031
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,976,088 - 88,022,252 (-)NCBI
GRCm38687,999,106 - 88,045,270 (-)NCBI
MGSCv37687,950,429 - 87,963,684 (-)RGD
Celera689,936,032 - 89,982,287 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_033031   ⟸   NM_009005
- UniProtKB: P51150 (UniProtKB/Swiss-Prot),   Q4FJQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001280581   ⟸   NM_001293652
- UniProtKB: P51150 (UniProtKB/Swiss-Prot),   Q4FJQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001280582   ⟸   NM_001293653
- UniProtKB: P51150 (UniProtKB/Swiss-Prot),   Q4FJQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001280584   ⟸   NM_001293655
- UniProtKB: P51150 (UniProtKB/Swiss-Prot),   Q4FJQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001280583   ⟸   NM_001293654
- UniProtKB: P51150 (UniProtKB/Swiss-Prot),   Q4FJQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000145097   ⟸   ENSMUST00000204126
RefSeq Acc Id: ENSMUSP00000145215   ⟸   ENSMUST00000203674
RefSeq Acc Id: ENSMUSP00000109230   ⟸   ENSMUST00000113600
RefSeq Acc Id: ENSMUSP00000109227   ⟸   ENSMUST00000113597
RefSeq Acc Id: ENSMUSP00000109226   ⟸   ENSMUST00000113596
RefSeq Acc Id: ENSMUSP00000109228   ⟸   ENSMUST00000113598
RefSeq Acc Id: ENSMUSP00000092658   ⟸   ENSMUST00000095048

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P51150-F1-model_v2 AlphaFold P51150 1-207 view protein structure

Promoters
RGD ID:6838909
Promoter ID:MM_KWN:46805
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Brain
Transcripts:UC009CUU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36687,950,369 - 87,950,869 (-)MPROMDB
RGD ID:6839820
Promoter ID:MM_KWN:46806
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Kidney,   Liver,   MEF_B6
Transcripts:UC009CUV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36687,963,234 - 87,963,734 (-)MPROMDB
RGD ID:6839821
Promoter ID:MM_KWN:46807
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Kidney
Transcripts:UC009CUW.1,   UC009CUX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36687,969,496 - 87,970,472 (-)MPROMDB
RGD ID:6839818
Promoter ID:MM_KWN:46809
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:ENSMUST00000113596,   ENSMUST00000113598,   OTTMUST00000060589
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36687,994,924 - 87,995,424 (-)MPROMDB
RGD ID:6890362
Promoter ID:EPDNEW_M8632
Type:initiation region
Name:Rab7_1
Description:Mus musculus RAB7, member RAS oncogene family , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38688,045,199 - 88,045,259EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:105068 AgrOrtholog
Ensembl Genes ENSMUSG00000079477 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000092658 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109226 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109227 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109228 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109230 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000145097.2 UniProtKB/TrEMBL
  ENSMUSP00000145215.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000095048 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113596 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113597 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113598 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113600 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000203674.3 UniProtKB/TrEMBL
  ENSMUST00000204126.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19349 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:105068 ENTREZGENE
NCBI Gene 19349 ENTREZGENE
Pfam Ras UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rab7 PhenoGen
PROSITE RAB UniProtKB/Swiss-Prot
  RAS UniProtKB/TrEMBL
SMART RHO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs small_GTP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0N4SVG9_MOUSE UniProtKB/TrEMBL
  A0A0N4SVR6_MOUSE UniProtKB/TrEMBL
  P51150 ENTREZGENE
  Q4FJQ0 ENTREZGENE, UniProtKB/TrEMBL
  RAB7A_MOUSE UniProtKB/Swiss-Prot