Rps7 (ribosomal protein S7) - Rat Genome Database

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Gene: Rps7 (ribosomal protein S7) Mus musculus
Analyze
Symbol: Rps7
Name: ribosomal protein S7
RGD ID: 62200
MGI Page MGI
Description: Predicted to enable mRNA binding activity; protein kinase binding activity; and ubiquitin ligase inhibitor activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within cell differentiation and neural tube closure. Located in synapse. Is expressed in brain and pancreas epithelium. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 8. Orthologous to human RPS7 (ribosomal protein S7); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 40S ribosomal protein S7; Mtu; Rps7A; S; S7
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm13406   Gm13739   Gm16419   Gm17988   Gm17994   Gm17995   Gm18024   Gm18077   Gm4761   Gm5055   Gm5135   Gm7091   Gm7351   Gm7633   Gm7760   Gm7807   Gm8019   Gm8748   Gm9367   Gm9493   Rps7-ps1   Rps7-ps3  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391228,680,846 - 28,685,952 (-)NCBIGRCm39mm39
GRCm39 Ensembl1228,680,853 - 28,685,952 (-)Ensembl
GRCm381228,630,847 - 28,635,953 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1228,630,854 - 28,635,953 (-)EnsemblGRCm38mm10GRCm38
MGSCv371229,315,712 - 29,320,818 (-)NCBIGRCm37mm9NCBIm37
MGSCv361229,217,366 - 29,222,193 (-)NCBImm8
Celera1230,121,287 - 30,126,412 (-)NCBICelera
Cytogenetic Map12A2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-nitrofluorene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
acetamide  (ISO)
acrolein  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
antimycin A  (ISO)
aristolochic acid  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (EXP)
beryllium sulfate  (ISO)
bisphenol A  (ISO)
chloropicrin  (ISO)
choline  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
CU-O LINKAGE  (ISO)
cylindrospermopsin  (EXP)
Deguelin  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (EXP)
disodium selenite  (ISO)
disulfiram  (ISO)
elemental selenium  (ISO)
fenbuconazole  (ISO)
fenpyroximate  (ISO)
flutamide  (ISO)
folic acid  (EXP)
gentamycin  (ISO)
glafenine  (ISO)
indole-3-methanol  (ISO)
ivermectin  (ISO)
L-methionine  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
melatonin  (EXP)
methapyrilene  (ISO)
miconazole  (EXP)
N-hydroxy-PhIP  (ISO)
N-nitrosodimethylamine  (ISO)
nickel atom  (EXP)
nitric oxide  (EXP)
ozone  (ISO)
paracetamol  (EXP)
PhIP  (ISO)
picoxystrobin  (ISO)
piperonyl butoxide  (ISO)
pirinixic acid  (ISO)
propiconazole  (EXP)
pyrimidifen  (ISO)
rotenone  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (EXP)
selenium atom  (ISO)
sodium fluoride  (EXP)
stigmasterol  (EXP)
sunitinib  (ISO)
tetrachloromethane  (ISO)
tungsten  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
vitamin E  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:9801797   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15384171   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:16452087   PMID:16582619   PMID:16602821   PMID:18307411   PMID:18554416   PMID:18614564   PMID:18809582   PMID:21529712   PMID:21565611   PMID:21873635   PMID:23382688  
PMID:24457600   PMID:26336360   PMID:26370502   PMID:30550785   PMID:30595499   PMID:30713523   PMID:31077711   PMID:32299058   PMID:32325033   PMID:32434143  


Genomics

Comparative Map Data
Rps7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391228,680,846 - 28,685,952 (-)NCBIGRCm39mm39
GRCm39 Ensembl1228,680,853 - 28,685,952 (-)Ensembl
GRCm381228,630,847 - 28,635,953 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1228,630,854 - 28,635,953 (-)EnsemblGRCm38mm10GRCm38
MGSCv371229,315,712 - 29,320,818 (-)NCBIGRCm37mm9NCBIm37
MGSCv361229,217,366 - 29,222,193 (-)NCBImm8
Celera1230,121,287 - 30,126,412 (-)NCBICelera
Cytogenetic Map12A2NCBI
RPS7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl23,575,260 - 3,580,920 (+)EnsemblGRCh38hg38GRCh38
GRCh3823,575,260 - 3,580,920 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3723,622,850 - 3,628,510 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3623,600,728 - 3,606,384 (+)NCBINCBI36hg18NCBI36
Build 3423,116,236 - 3,121,877NCBI
Celera23,631,842 - 3,637,496 (+)NCBI
Cytogenetic Map2p25.3NCBI
HuRef23,564,506 - 3,570,162 (+)NCBIHuRef
CHM1_123,552,270 - 3,557,926 (+)NCBICHM1_1
Rps7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2645,266,200 - 45,271,064 (-)NCBImRatBN7.2
Rnor_6.0647,899,525 - 47,904,389 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl647,899,525 - 47,904,437 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0656,601,561 - 56,606,425 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4646,511,961 - 46,516,825 (-)NCBIRGSC3.4rn4RGSC3.4
Celera644,489,474 - 44,494,338 (-)NCBICelera
Cytogenetic Map6q16NCBI
Rps7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554873,792,870 - 3,798,153 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554873,793,168 - 3,798,007 (-)NCBIChiLan1.0ChiLan1.0
RPS7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A3,511,821 - 3,517,785 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A3,512,079 - 3,517,785 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A3,593,350 - 3,599,106 (+)NCBIMhudiblu_PPA_v0panPan3
RPS7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1172,139,011 - 2,143,160 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl172,138,779 - 2,143,178 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha172,124,668 - 2,129,038 (+)NCBI
ROS_Cfam_1.0172,232,786 - 2,237,210 (+)NCBI
UMICH_Zoey_3.1172,118,040 - 2,122,418 (+)NCBI
UNSW_CanFamBas_1.0172,138,823 - 2,143,188 (+)NCBI
UU_Cfam_GSD_1.0172,140,682 - 2,145,067 (+)NCBI
Rps7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629246,980,151 - 46,985,156 (+)NCBI
SpeTri2.0NW_0049365321,734,993 - 1,740,202 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3131,258,713 - 131,342,877 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13131,258,709 - 131,263,285 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23140,517,094 - 140,521,644 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114104,069,825 - 104,075,669 (-)NCBI
ChlSab1.1 Ensembl14104,069,645 - 104,075,647 (-)Ensembl
Vero_WHO_p1.0NW_0236660458,223,822 - 8,229,697 (+)NCBI
Rps7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248465,185,236 - 5,190,357 (-)NCBI

Position Markers
RH125178  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12C1UniSTS
Cytogenetic Map19AUniSTS
UniSTS:488324  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X152,909,518 - 152,910,189UniSTSGRCm38
MGSCv37X149,344,061 - 149,344,732UniSTSGRCm37
CeleraX136,340,477 - 136,341,148UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic MapXF3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12910983Pifs1_mpeptide-induced fatal syndrome 1 (mouse)12130383077Mouse
1301925Ath6_matherosclerosis 6 (mouse)Not determined12132708755Mouse
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133380338Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1229013334290301Mouse
26884410Bzwq15_mbi-zygomatic width QTL 15, 16 week (mouse)12360000029700000Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12536844076984429Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12767315941673302Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12800000040000000Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12830244542302582Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12944100543441113Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12950000084100000Mouse
14746972Manh72_mmandible shape 72 (mouse)121056528244565282Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121057064344570810Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121161000097210000Mouse
4141516slwr_mslowlearner (mouse)Not determined1234247646342615Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121509733249097332Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121529102578993590Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121610000047700000Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121754644680910109Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121777585351775853Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121778994051790082Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121820996752210068Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121968983453689834Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122209886756099017Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:136
Count of miRNA genes:124
Interacting mature miRNAs:134
Transcripts:ENSMUST00000074267
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000074267   ⟹   ENSMUSP00000073880
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1228,680,853 - 28,685,952 (-)Ensembl
GRCm38.p6 Ensembl1228,630,854 - 28,635,953 (-)Ensembl
RefSeq Acc Id: ENSMUST00000220860
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1228,683,468 - 28,685,695 (-)Ensembl
GRCm38.p6 Ensembl1228,633,469 - 28,635,696 (-)Ensembl
RefSeq Acc Id: ENSMUST00000221871   ⟹   ENSMUSP00000152456
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1228,681,083 - 28,685,856 (-)Ensembl
GRCm38.p6 Ensembl1228,631,084 - 28,635,857 (-)Ensembl
RefSeq Acc Id: ENSMUST00000222228
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1228,685,174 - 28,685,877 (-)Ensembl
GRCm38.p6 Ensembl1228,635,175 - 28,635,878 (-)Ensembl
RefSeq Acc Id: ENSMUST00000222808
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1228,681,082 - 28,683,907 (-)Ensembl
GRCm38.p6 Ensembl1228,631,083 - 28,633,908 (-)Ensembl
RefSeq Acc Id: ENSMUST00000223153
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1228,681,082 - 28,681,916 (-)Ensembl
GRCm38.p6 Ensembl1228,631,083 - 28,631,917 (-)Ensembl
RefSeq Acc Id: ENSMUST00000223318
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1228,681,085 - 28,682,389 (-)Ensembl
GRCm38.p6 Ensembl1228,631,086 - 28,632,390 (-)Ensembl
RefSeq Acc Id: NM_011300   ⟹   NP_035430
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391228,680,846 - 28,685,952 (-)NCBI
GRCm381228,630,847 - 28,635,953 (-)ENTREZGENE
MGSCv371229,315,712 - 29,320,818 (-)RGD
Celera1230,121,287 - 30,126,412 (-)RGD
cM Map12 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_035430   ⟸   NM_011300
- UniProtKB: P62082 (UniProtKB/Swiss-Prot),   Q4FZE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000073880   ⟸   ENSMUST00000074267
RefSeq Acc Id: ENSMUSP00000152456   ⟸   ENSMUST00000221871

Promoters
RGD ID:8678046
Promoter ID:EPDNEW_M17054
Type:initiation region
Name:Rps7_1
Description:Mus musculus ribosomal protein S7 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381228,635,881 - 28,635,941EPDNEW
RGD ID:6847008
Promoter ID:MM_ACW:10283
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   ES_Cell,   MEF_B6
Transcripts:RPS7.HSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361229,318,789 - 29,319,289 (-)MPROMDB
RGD ID:6823372
Promoter ID:MM_KWN:11392
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_011300
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361229,320,569 - 29,321,069 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1333818 AgrOrtholog
Ensembl Genes ENSMUSG00000061477 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000073880 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000152456 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000074267 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000221871 UniProtKB/Swiss-Prot
InterPro Ribosomal_S7e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20115 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1333818 ENTREZGENE
NCBI Gene 20115 ENTREZGENE
PANTHER PTHR11278 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_S7e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rps7 PhenoGen
PROSITE RIBOSOMAL_S7E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt P62082 ENTREZGENE
  Q4FZE6 ENTREZGENE, UniProtKB/TrEMBL
  RS7_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary P23821 UniProtKB/Swiss-Prot
  P24818 UniProtKB/Swiss-Prot