Scarb2 (scavenger receptor class B, member 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Scarb2 (scavenger receptor class B, member 2) Rattus norvegicus
Analyze
Symbol: Scarb2
Name: scavenger receptor class B, member 2
RGD ID: 621882
Description: Predicted to enable several functions, including chaperone binding activity; cholesterol binding activity; and phospholipid binding activity. Involved in positive regulation of neuron projection development. Predicted to be located in endocytic vesicle membrane; lysosomal lumen; and lysosomal membrane. Predicted to be active in cytoplasm and plasma membrane. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 4. Orthologous to human SCARB2 (scavenger receptor class B member 2); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 85 kDa lysosomal membrane sialoglycoprotein; CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2; CD36 antigen-like 2; Cd36l2; LGP85; LIMP II; LimpII; lysosome membrane protein 2; lysosome membrane protein II; scavenger receptor class B member 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21415,558,271 - 15,609,813 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1415,558,236 - 15,609,813 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1415,566,223 - 15,618,045 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01416,885,066 - 16,936,897 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01415,580,484 - 15,632,314 (+)NCBIRnor_WKY
Rnor_6.01417,064,173 - 17,115,620 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1417,064,353 - 17,115,963 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01416,980,270 - 17,031,712 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41417,119,366 - 17,170,850 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11417,119,365 - 17,170,850 (+)NCBI
Celera1414,952,893 - 15,004,293 (+)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-acetamidofluorene  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
5-aza-2'-deoxycytidine  (ISO)
acetamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
ampicillin  (EXP)
aristolochic acid  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
choline  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
diethylstilbestrol  (ISO)
Enterolactone  (ISO)
ethanol  (ISO)
fenthion  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
genistein  (ISO)
gentamycin  (EXP)
isoprenaline  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
leflunomide  (EXP,ISO)
lipopolysaccharide  (ISO)
LY294002  (ISO)
metronidazole  (EXP)
N,N-diethyl-m-toluamide  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
nefazodone  (EXP)
neomycin  (EXP)
nimesulide  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctanoic acid  (EXP)
permethrin  (EXP)
pirinixic acid  (EXP,ISO)
resveratrol  (ISO)
rotenone  (ISO)
sarin  (ISO)
sirolimus  (ISO)
sodium dichromate  (EXP)
sunitinib  (ISO)
tauroursodeoxycholic acid  (EXP)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloroethene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
urethane  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vancomycin  (EXP)
Yessotoxin  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. A multilevel screening strategy defines a molecular fingerprint of proregenerative olfactory ensheathing cells and identifies SCARB2, a protein that improves regenerative sprouting of injured sensory spinal axons. Roet KC, etal., J Neurosci. 2013 Jul 3;33(27):11116-35. doi: 10.1523/JNEUROSCI.1002-13.2013.
10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
11. Cloning, sequencing, and expression of a cDNA encoding rat LIMP II, a novel 74-kDa lysosomal membrane protein related to the surface adhesion protein CD36. Vega MA, etal., J Biol Chem 1991 Sep 5;266(25):16818-24.
Additional References at PubMed
PMID:1859403   PMID:15489334   PMID:16138903   PMID:17897319   PMID:18022370   PMID:19056867   PMID:19946888   PMID:21423176   PMID:23376485   PMID:23533145   PMID:25202012   PMID:25316793  
PMID:27789271   PMID:29199275   PMID:32007273   PMID:33010890  


Genomics

Comparative Map Data
Scarb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21415,558,271 - 15,609,813 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1415,558,236 - 15,609,813 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1415,566,223 - 15,618,045 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01416,885,066 - 16,936,897 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01415,580,484 - 15,632,314 (+)NCBIRnor_WKY
Rnor_6.01417,064,173 - 17,115,620 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1417,064,353 - 17,115,963 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01416,980,270 - 17,031,712 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41417,119,366 - 17,170,850 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11417,119,365 - 17,170,850 (+)NCBI
Celera1414,952,893 - 15,004,293 (+)NCBICelera
Cytogenetic Map14p22NCBI
SCARB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38476,158,737 - 76,234,532 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl476,158,737 - 76,234,536 (-)EnsemblGRCh38hg38GRCh38
GRCh37477,079,890 - 77,134,977 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36477,298,918 - 77,354,059 (-)NCBINCBI36Build 36hg18NCBI36
Build 34477,437,072 - 77,492,214NCBI
Celera474,380,030 - 74,435,161 (-)NCBICelera
Cytogenetic Map4q21.1NCBI
HuRef472,831,916 - 72,887,070 (-)NCBIHuRef
CHM1_1477,056,276 - 77,111,407 (-)NCBICHM1_1
T2T-CHM13v2.0479,499,409 - 79,554,492 (-)NCBIT2T-CHM13v2.0
Scarb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39592,589,170 - 92,653,516 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl592,589,173 - 92,654,692 (-)EnsemblGRCm39 Ensembl
GRCm38592,441,311 - 92,505,657 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl592,441,314 - 92,506,833 (-)EnsemblGRCm38mm10GRCm38
MGSCv37592,872,899 - 92,934,634 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36593,519,073 - 93,580,808 (-)NCBIMGSCv36mm8
Celera590,592,338 - 90,656,687 (-)NCBICelera
Cytogenetic Map5E2NCBI
Scarb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955433884,740 - 962,932 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955433884,740 - 962,932 (-)NCBIChiLan1.0ChiLan1.0
SCARB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1453,830,488 - 53,886,065 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl453,830,488 - 53,886,059 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0447,992,589 - 48,047,528 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SCARB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.132788,117 - 865,496 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl32790,379 - 865,502 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3241,016,853 - 41,094,397 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.032814,945 - 891,722 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl32814,948 - 891,728 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.132812,765 - 889,655 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.032767,039 - 843,700 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03239,325,616 - 39,402,476 (+)NCBIUU_Cfam_GSD_1.0
Scarb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528511,281,403 - 11,339,761 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936676167,482 - 225,827 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCARB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl871,838,397 - 71,940,607 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1871,838,395 - 71,910,461 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2876,034,114 - 76,105,880 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCARB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1724,658,734 - 24,714,631 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl724,658,211 - 24,714,597 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660373,007,021 - 3,062,819 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scarb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475714,709,120 - 14,795,243 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475714,709,120 - 14,795,039 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Scarb2
385 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:32
Interacting mature miRNAs:36
Transcripts:ENSRNOT00000003052
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14121760616960180Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)14381307418274691Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14381307418274691Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062228035204Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141103081230320092Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141487516830883947Rat

Markers in Region
D14Got18  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21415,559,987 - 15,560,158 (+)MAPPERmRatBN7.2
Rnor_6.01417,065,890 - 17,066,060NCBIRnor6.0
Rnor_5.01416,981,987 - 16,982,157UniSTSRnor5.0
RGSC_v3.41417,121,082 - 17,121,253RGDRGSC3.4
RGSC_v3.41417,121,083 - 17,121,253UniSTSRGSC3.4
RGSC_v3.11417,121,083 - 17,121,253RGD
Celera1414,954,610 - 14,954,780UniSTS
RH 3.4 Map14190.0UniSTS
RH 3.4 Map14190.0RGD
RH 2.0 Map14203.0RGD
Cytogenetic Map14p22UniSTS
D14Got20  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21415,589,153 - 15,589,333 (+)MAPPERmRatBN7.2
Rnor_6.01417,094,964 - 17,095,141NCBIRnor6.0
Rnor_5.01417,011,056 - 17,011,233UniSTSRnor5.0
RGSC_v3.41417,150,193 - 17,150,371RGDRGSC3.4
RGSC_v3.41417,150,194 - 17,150,371UniSTSRGSC3.4
RGSC_v3.11417,150,193 - 17,150,371RGD
Celera1414,983,663 - 14,983,840UniSTS
RH 2.0 Map14206.9RGD
Cytogenetic Map14p22UniSTS
BM390590  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21415,597,845 - 15,598,059 (+)MAPPERmRatBN7.2
Rnor_6.01417,103,653 - 17,103,866NCBIRnor6.0
Rnor_5.01417,019,745 - 17,019,958UniSTSRnor5.0
RGSC_v3.41417,158,883 - 17,159,096UniSTSRGSC3.4
Celera1414,992,326 - 14,992,539UniSTS
RH 3.4 Map14213.1UniSTS
Cytogenetic Map14p22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 42 57 41 19 41 8 11 74 35 36 11 8
Low 1 5
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000003052   ⟹   ENSRNOP00000003052
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1415,558,236 - 15,608,502 (+)Ensembl
Rnor_6.0 Ensembl1417,064,353 - 17,115,963 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102726   ⟹   ENSRNOP00000078097
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1415,576,813 - 15,609,813 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103647   ⟹   ENSRNOP00000097524
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1415,558,236 - 15,609,809 (+)Ensembl
RefSeq Acc Id: NM_054001   ⟹   NP_446453
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21415,558,271 - 15,609,813 (+)NCBI
Rnor_6.01417,064,173 - 17,115,620 (+)NCBI
Rnor_5.01416,980,270 - 17,031,712 (+)NCBI
RGSC_v3.41417,119,366 - 17,170,850 (+)RGD
Celera1414,952,893 - 15,004,293 (+)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: NP_446453   ⟸   NM_054001
- Peptide Label: precursor
- UniProtKB: P27615 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000003052   ⟸   ENSRNOT00000003052
RefSeq Acc Id: ENSRNOP00000078097   ⟸   ENSRNOT00000102726
RefSeq Acc Id: ENSRNOP00000097524   ⟸   ENSRNOT00000103647

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P27615-F1-model_v2 AlphaFold P27615 1-478 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621882 AgrOrtholog
BioCyc Gene G2FUF-16267 BioCyc
Ensembl Genes ENSRNOG00000002225 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000003052.5 UniProtKB/TrEMBL
  ENSRNOP00000078097.1 UniProtKB/TrEMBL
  ENSRNOP00000097524 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000003052.7 UniProtKB/TrEMBL
  ENSRNOT00000102726.1 UniProtKB/TrEMBL
  ENSRNOT00000103647 ENTREZGENE, UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5621697 IMAGE-MGC_LOAD
InterPro CD36/SCARB1/SNMP1 UniProtKB/TrEMBL
  CD36_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LimpII UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:117106 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72341 IMAGE-MGC_LOAD
NCBI Gene 117106 ENTREZGENE
PANTHER PTHR11923 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CD36 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Scarb2 PhenoGen
PRINTS CD36ANTIGEN UniProtKB/TrEMBL
  CD36FAMILY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIMPII UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5YC62_RAT UniProtKB/TrEMBL
  A0A8L2Q0Y1_RAT UniProtKB/TrEMBL
  P27615 ENTREZGENE
  Q6B4I7_RAT UniProtKB/TrEMBL
  SCRB2_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Scarb2  scavenger receptor class B, member 2    CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2  Name updated 1299863 APPROVED
2004-09-10 Scarb2  CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2  Cd36l2    Symbol and Name updated 1299863 APPROVED
2002-08-07 Cd36l2  CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_homology has a high degree of homology to cell adhesion protein CD36 632394
gene_protein consists of 478 amino acid residues and has 11 potential N-glycosylation sites and 5 cysteine residues 632394