Camk2g (calcium/calmodulin-dependent protein kinase II gamma) - Rat Genome Database

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Gene: Camk2g (calcium/calmodulin-dependent protein kinase II gamma) Rattus norvegicus
Analyze
Symbol: Camk2g
Name: calcium/calmodulin-dependent protein kinase II gamma
RGD ID: 621802
Description: Enables calmodulin-dependent protein kinase activity. Involved in several processes, including protein autophosphorylation; regulation of protein localization to plasma membrane; and response to hypoxia. Predicted to be located in postsynaptic density. Predicted to be part of calcium- and calmodulin-dependent protein kinase complex. Predicted to be active in cytoplasm and neuron projection. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability. Orthologous to human CAMK2G (calcium/calmodulin dependent protein kinase II gamma); PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; N-cadherin signaling pathway; type II interferon signaling pathway; INTERACTS WITH 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 17beta-estradiol; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Ca+2/calmodulin-dependent protein kinase II gamma; calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma; calcium/calmodulin-dependent protein kinase type II gamma chain; calcium/calmodulin-dependent protein kinase type II subunit gamma; calcium/calmodulin-dependent protein kinase type II subunit gamma-like; caM kinase II subunit gamma; caM-kinase II gamma chain; caMK-II subunit gamma; LOC100909586
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2153,504,017 - 3,563,050 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl153,504,085 - 3,563,050 (+)Ensembl
Rnor_6.0153,936,721 - 3,995,740 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl153,936,786 - 3,995,915 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl152,547,616 - 2,550,043 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0153,669,219 - 3,724,735 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4153,729,433 - 3,786,060 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1153,729,432 - 3,786,060 (+)NCBI
Celera151,033,077 - 1,088,815 (-)NCBICelera
Cytogenetic Map15p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
9-cis-retinoic acid  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
arsenous acid  (ISO)
atrazine  (ISO)
azoxystrobin  (EXP)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bexarotene  (EXP)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
chlorpyrifos  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
DDE  (EXP)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
diazinon  (EXP)
dibutyl phthalate  (EXP)
dieldrin  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP,ISO)
ferroheme b  (ISO)
folic acid  (ISO)
gallic acid  (ISO)
gamma-tocopherol  (ISO)
glyphosate  (EXP)
heme b  (ISO)
imidacloprid  (EXP)
ivermectin  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
linuron  (EXP)
methotrexate  (ISO)
methylseleninic acid  (ISO)
nickel dichloride  (EXP)
nitrofen  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
pirinixic acid  (ISO)
prochloraz  (EXP)
procymidone  (EXP)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tetraphene  (ISO)
thiabendazole  (EXP)
titanium dioxide  (ISO)
tocopherol  (ISO)
tributylstannane  (ISO)
valproic acid  (ISO)
venlafaxine hydrochloride  (EXP)
vinclozolin  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)

References

Additional References at PubMed
PMID:2846534   PMID:9083077   PMID:10625670   PMID:11264466   PMID:12660151   PMID:15569687   PMID:17114649   PMID:19207476   PMID:19292454   PMID:19946888   PMID:20124353   PMID:20131911  
PMID:20433809   PMID:20668654   PMID:22871113   PMID:23283722   PMID:23504235   PMID:25007998   PMID:25303525   PMID:25931508   PMID:27685016   PMID:28423675   PMID:29476059   PMID:30184290  
PMID:30361391   PMID:31518169   PMID:32553080   PMID:32645222  


Genomics

Comparative Map Data
Camk2g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2153,504,017 - 3,563,050 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl153,504,085 - 3,563,050 (+)Ensembl
Rnor_6.0153,936,721 - 3,995,740 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl153,936,786 - 3,995,915 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl152,547,616 - 2,550,043 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0153,669,219 - 3,724,735 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4153,729,433 - 3,786,060 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1153,729,432 - 3,786,060 (+)NCBI
Celera151,033,077 - 1,088,815 (-)NCBICelera
Cytogenetic Map15p16NCBI
CAMK2G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1073,812,501 - 73,874,591 (-)EnsemblGRCh38hg38GRCh38
GRCh381073,812,501 - 73,874,582 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371075,572,259 - 75,634,313 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361075,242,265 - 75,304,349 (-)NCBINCBI36hg18NCBI36
Celera1068,855,429 - 68,917,528 (-)NCBI
Cytogenetic Map10q22.2NCBI
HuRef1069,567,318 - 69,629,331 (-)NCBIHuRef
CHM1_11075,854,035 - 75,916,102 (-)NCBICHM1_1
Camk2g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391420,784,941 - 20,844,225 (-)NCBIGRCm39mm39
GRCm39 Ensembl1420,784,943 - 20,844,156 (-)Ensembl
GRCm381420,734,873 - 20,794,157 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1420,734,875 - 20,794,088 (-)EnsemblGRCm38mm10GRCm38
MGSCv371421,554,097 - 21,613,310 (-)NCBIGRCm37mm9NCBIm37
MGSCv361419,523,427 - 19,582,640 (-)NCBImm8
Celera1417,117,684 - 17,175,721 (-)NCBICelera
Cytogenetic Map14A3NCBI
Camk2g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543718,036,046 - 18,087,408 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543718,036,614 - 18,089,876 (+)NCBIChiLan1.0ChiLan1.0
CAMK2G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11073,008,103 - 73,068,749 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1073,008,103 - 73,068,737 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01070,335,474 - 70,397,617 (-)NCBIMhudiblu_PPA_v0panPan3
CAMK2G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1424,244,063 - 24,299,362 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl424,245,960 - 24,299,357 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha424,381,620 - 24,436,933 (-)NCBI
ROS_Cfam_1.0424,524,382 - 24,579,684 (-)NCBI
UMICH_Zoey_3.1424,421,519 - 24,476,778 (-)NCBI
UNSW_CanFamBas_1.0424,621,950 - 24,677,415 (-)NCBI
UU_Cfam_GSD_1.0424,977,002 - 25,032,361 (-)NCBI
Camk2g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721356,783,885 - 56,833,388 (+)NCBI
SpeTri2.0NW_0049365215,276,629 - 5,325,907 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAMK2G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1476,535,095 - 76,592,909 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11476,535,095 - 76,632,381 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21482,661,735 - 82,758,710 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CAMK2G
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1957,498,384 - 57,559,724 (+)NCBI
ChlSab1.1 Ensembl957,498,429 - 57,559,811 (+)Ensembl
Vero_WHO_p1.0NW_02366604818,074,467 - 18,136,823 (+)NCBI
Camk2g
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247547,325,828 - 7,380,870 (-)NCBI

Position Markers
RH144165  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2153,501,672 - 3,501,847 (+)MAPPERmRatBN7.2
Rnor_6.0153,934,366 - 3,934,540NCBIRnor6.0
Rnor_6.0153,689,226 - 3,689,400NCBIRnor6.0
Rnor_5.0153,665,831 - 3,666,005UniSTSRnor5.0
RGSC_v3.4153,725,455 - 3,725,629UniSTSRGSC3.4
Celera151,092,467 - 1,092,641UniSTS
RH 3.4 Map1565.1UniSTS
Cytogenetic Map15p16UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15105825014481294Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)colorectal tumor number (CMO:0001794)15226636822711984Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:290
Count of miRNA genes:107
Interacting mature miRNAs:112
Transcripts:ENSRNOT00000065644, ENSRNOT00000066163, ENSRNOT00000067162
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 34 5 4 10 4 8 11 74 20 33 11 8
Low 1 9 52 37 9 37 15 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_133605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC127920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J04063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KP030854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S71571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U73503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000065644   ⟹   ENSRNOP00000061233
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,505,401 - 3,559,057 (+)Ensembl
Rnor_6.0 Ensembl153,938,075 - 3,995,915 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000066163   ⟹   ENSRNOP00000062321
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,504,093 - 3,561,179 (+)Ensembl
Rnor_6.0 Ensembl153,936,786 - 3,993,869 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000086712
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl152,547,616 - 2,550,043 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107544   ⟹   ENSRNOP00000088587
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,504,085 - 3,563,042 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108734   ⟹   ENSRNOP00000083090
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,504,085 - 3,563,042 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110339   ⟹   ENSRNOP00000084344
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,504,118 - 3,563,050 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000114050   ⟹   ENSRNOP00000090198
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,504,094 - 3,563,045 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118195   ⟹   ENSRNOP00000085737
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,504,118 - 3,563,050 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000120009   ⟹   ENSRNOP00000090296
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,504,085 - 3,563,042 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000120116   ⟹   ENSRNOP00000077055
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,504,085 - 3,563,042 (+)Ensembl
RefSeq Acc Id: NM_133605   ⟹   NP_598289
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,504,093 - 3,561,179 (+)NCBI
Rnor_6.0153,936,786 - 3,993,869 (+)NCBI
Rnor_5.0153,669,219 - 3,724,735 (+)NCBI
RGSC_v3.4153,729,433 - 3,786,060 (+)RGD
Celera151,033,077 - 1,088,815 (-)RGD
Sequence:
RefSeq Acc Id: XM_008770486   ⟹   XP_008768708
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,504,020 - 3,563,050 (+)NCBI
Rnor_6.0153,936,722 - 3,995,740 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770487   ⟹   XP_008768709
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,504,019 - 3,563,050 (+)NCBI
Rnor_6.0153,936,721 - 3,995,740 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770488   ⟹   XP_008768710
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,504,020 - 3,563,050 (+)NCBI
Rnor_6.0153,936,722 - 3,995,740 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770489   ⟹   XP_008768711
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,504,020 - 3,563,050 (+)NCBI
Rnor_6.0153,936,724 - 3,995,740 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770490   ⟹   XP_008768712
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,504,020 - 3,563,050 (+)NCBI
Rnor_6.0153,936,723 - 3,995,740 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770491   ⟹   XP_008768713
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,504,021 - 3,563,050 (+)NCBI
Rnor_6.0153,936,724 - 3,995,740 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770492   ⟹   XP_008768714
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,504,020 - 3,563,050 (+)NCBI
Rnor_6.0153,936,723 - 3,995,740 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770493   ⟹   XP_008768715
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,504,021 - 3,563,050 (+)NCBI
Rnor_6.0153,936,724 - 3,995,740 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770494   ⟹   XP_008768716
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,504,022 - 3,563,050 (+)NCBI
Rnor_6.0153,936,724 - 3,995,740 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770495   ⟹   XP_008768717
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,504,021 - 3,563,050 (+)NCBI
Rnor_6.0153,936,725 - 3,995,740 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770496   ⟹   XP_008768718
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,504,022 - 3,563,050 (+)NCBI
Rnor_6.0153,936,726 - 3,995,740 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770497   ⟹   XP_008768719
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,504,023 - 3,563,050 (+)NCBI
Rnor_6.0153,936,726 - 3,995,740 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770498   ⟹   XP_008768720
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,504,022 - 3,563,050 (+)NCBI
Rnor_6.0153,936,725 - 3,995,740 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770499   ⟹   XP_008768721
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,504,023 - 3,563,050 (+)NCBI
Rnor_6.0153,936,726 - 3,995,740 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599575   ⟹   XP_017455064
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,507,028 - 3,563,050 (+)NCBI
Rnor_6.0153,939,318 - 3,995,740 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599576   ⟹   XP_017455065
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,504,021 - 3,563,050 (+)NCBI
Rnor_6.0153,936,725 - 3,995,740 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599577   ⟹   XP_017455066
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,504,023 - 3,563,050 (+)NCBI
Rnor_6.0153,936,726 - 3,995,740 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039092971   ⟹   XP_038948899
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,531,297 - 3,563,050 (+)NCBI
RefSeq Acc Id: XM_039092972   ⟹   XP_038948900
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,504,019 - 3,558,344 (+)NCBI
RefSeq Acc Id: XR_001841253
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2153,504,017 - 3,563,050 (+)NCBI
Rnor_6.0153,936,721 - 3,995,740 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_598289 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768708 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768709 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768710 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768711 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768712 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768713 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768714 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768715 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768716 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768717 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768718 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768719 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768720 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768721 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455064 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455065 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455066 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948899 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948900 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41857 (Get FASTA)   NCBI Sequence Viewer  
  AAB30671 (Get FASTA)   NCBI Sequence Viewer  
  AAC53138 (Get FASTA)   NCBI Sequence Viewer  
  AKJ87842 (Get FASTA)   NCBI Sequence Viewer  
  EDL86250 (Get FASTA)   NCBI Sequence Viewer  
  EDL86251 (Get FASTA)   NCBI Sequence Viewer  
  EDL86252 (Get FASTA)   NCBI Sequence Viewer  
  EDL86253 (Get FASTA)   NCBI Sequence Viewer  
  P11730 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_598289   ⟸   NM_133605
- UniProtKB: P11730 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008768709   ⟸   XM_008770487
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008768708   ⟸   XM_008770486
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008768712   ⟸   XM_008770490
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008768710   ⟸   XM_008770488
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008768714   ⟸   XM_008770492
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008768711   ⟸   XM_008770489
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008768713   ⟸   XM_008770491
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008768715   ⟸   XM_008770493
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_008768716   ⟸   XM_008770494
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_008768718   ⟸   XM_008770496
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_008768717   ⟸   XM_008770495
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_008768720   ⟸   XM_008770498
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_008768719   ⟸   XM_008770497
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_008768721   ⟸   XM_008770499
- Peptide Label: isoform X16
- UniProtKB: P11730 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017455065   ⟸   XM_017599576
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017455066   ⟸   XM_017599577
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_017455064   ⟸   XM_017599575
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: ENSRNOP00000061233   ⟸   ENSRNOT00000065644
RefSeq Acc Id: ENSRNOP00000062321   ⟸   ENSRNOT00000066163
RefSeq Acc Id: XP_038948900   ⟸   XM_039092972
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038948899   ⟸   XM_039092971
- Peptide Label: isoform X17
RefSeq Acc Id: ENSRNOP00000090198   ⟸   ENSRNOT00000114050
RefSeq Acc Id: ENSRNOP00000077055   ⟸   ENSRNOT00000120116
RefSeq Acc Id: ENSRNOP00000088587   ⟸   ENSRNOT00000107544
RefSeq Acc Id: ENSRNOP00000085737   ⟸   ENSRNOT00000118195
RefSeq Acc Id: ENSRNOP00000090296   ⟸   ENSRNOT00000120009
RefSeq Acc Id: ENSRNOP00000084344   ⟸   ENSRNOT00000110339
RefSeq Acc Id: ENSRNOP00000083090   ⟸   ENSRNOT00000108734
Protein Domains
CaMKII_AD   Protein kinase

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699557
Promoter ID:EPDNEW_R10079
Type:initiation region
Name:Camk2g_1
Description:calcium/calmodulin-dependent protein kinase II gamma
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0153,936,760 - 3,936,820EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621802 AgrOrtholog
Ensembl Genes ENSRNOG00000009783 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00000051560 Ensembl
Ensembl Protein ENSRNOP00000061233 UniProtKB/TrEMBL
  ENSRNOP00000062321 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000065644 UniProtKB/TrEMBL
  ENSRNOT00000066163 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Ca/CaM-dep_prot_kinase-assoc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NTF2-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:171140 UniProtKB/Swiss-Prot
NCBI Gene 171140 ENTREZGENE
Pfam CaMKII_AD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Camk2g PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART S_TKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54427 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G3FMJ5_RAT UniProtKB/TrEMBL
  F1M3F8_RAT UniProtKB/TrEMBL
  KCC2G_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q64003 UniProtKB/Swiss-Prot
  Q64004 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Camk2g  calcium/calmodulin-dependent protein kinase II gamma  LOC100909586  calcium/calmodulin-dependent protein kinase type II subunit gamma-like  Data Merged 737654 PROVISIONAL
2012-07-05 LOC100909586  calcium/calmodulin-dependent protein kinase type II subunit gamma-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-11-11 Camk2g  calcium/calmodulin-dependent protein kinase II gamma  Camk2g  calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-23 Camk2g  calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma  Camk2g  calcium/calmodulin-dependent protein kinase II gamma  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-12-14 Camk2g  calcium/calmodulin-dependent protein kinase II gamma    calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma  Name updated 1299863 APPROVED
2002-08-07 Camk2g  calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_process autophosphorylated form decreases inactivation of the voltage-gated outward K+ current in rat brain 724615