Cdc42bpb (CDC42 binding protein kinase beta) - Rat Genome Database

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Pathways
Gene: Cdc42bpb (CDC42 binding protein kinase beta) Rattus norvegicus
Analyze
Symbol: Cdc42bpb
Name: CDC42 binding protein kinase beta
RGD ID: 621753
Description: Enables protein serine/threonine kinase activity and small GTPase binding activity. Involved in actomyosin structure organization; cell migration; and protein phosphorylation. Located in actomyosin. Orthologous to human CDC42BPB (CDC42 binding protein kinase beta); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CDC42 binding protein kinase beta (DMPK-like); Cdc42-binding protein kinase beta; DMPK-like beta; MRCK beta; myotonic dystrophy kinase-related CDC42-binding kinase beta; myotonic dystrophy protein kinase-like beta; serine/threonine-protein kinase MRCK beta
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86136,154,905 - 136,241,259 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6136,154,905 - 136,237,570 (-)EnsemblGRCr8
mRatBN7.26130,333,712 - 130,416,631 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,333,712 - 130,416,377 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6130,504,511 - 130,586,328 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06130,800,504 - 130,882,318 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06130,163,771 - 130,246,465 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06135,746,743 - 135,830,144 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,746,754 - 135,830,086 (-)Ensemblrn6Rnor6.0
Rnor_5.06144,585,365 - 144,667,686 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46136,053,885 - 136,136,234 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6127,890,990 - 127,973,161 (-)NCBICelera
RGSC_v3.16136,061,068 - 136,142,380 (-)NCBI
Cytogenetic Map6q32NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
amphetamine  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (EXP,ISO)
C60 fullerene  (EXP)
cadmium dichloride  (ISO)
calcium atom  (EXP)
calcium(0)  (EXP)
clobetasol  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dicrotophos  (ISO)
flavonoids  (EXP)
folic acid  (ISO)
FR900359  (ISO)
hexadecanoic acid  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
levonorgestrel  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (ISO)
methoxychlor  (EXP)
N-nitrosodiethylamine  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
piperonyl butoxide  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
rac-lactic acid  (ISO)
resveratrol  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
testosterone undecanoate  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Adaptor protein LRAP25 mediates myotonic dystrophy kinase-related Cdc42-binding kinase (MRCK) regulation of LIMK1 protein in lamellipodial F-actin dynamics. Lee IC, etal., J Biol Chem. 2014 Sep 26;289(39):26989-7003. doi: 10.1074/jbc.M114.588079. Epub 2014 Aug 8.
3. Myotonic dystrophy kinase-related Cdc42-binding kinase acts as a Cdc42 effector in promoting cytoskeletal reorganization. Leung T, etal., Mol Cell Biol 1998 Jan;18(1):130-40.
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. A tripartite complex containing MRCK modulates lamellar actomyosin retrograde flow. Tan I, etal., Cell. 2008 Oct 3;135(1):123-36. doi: 10.1016/j.cell.2008.09.018.
Additional References at PubMed
PMID:19056867   PMID:21949762   PMID:25743393  


Genomics

Comparative Map Data
Cdc42bpb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86136,154,905 - 136,241,259 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6136,154,905 - 136,237,570 (-)EnsemblGRCr8
mRatBN7.26130,333,712 - 130,416,631 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,333,712 - 130,416,377 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6130,504,511 - 130,586,328 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06130,800,504 - 130,882,318 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06130,163,771 - 130,246,465 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06135,746,743 - 135,830,144 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,746,754 - 135,830,086 (-)Ensemblrn6Rnor6.0
Rnor_5.06144,585,365 - 144,667,686 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46136,053,885 - 136,136,234 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6127,890,990 - 127,973,161 (-)NCBICelera
RGSC_v3.16136,061,068 - 136,142,380 (-)NCBI
Cytogenetic Map6q32NCBI
CDC42BPB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814102,932,380 - 103,057,549 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14102,932,380 - 103,057,549 (-)Ensemblhg38GRCh38
GRCh3714103,398,717 - 103,523,886 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3614102,468,469 - 102,593,495 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3414102,468,469 - 102,593,552NCBI
Celera1483,452,838 - 83,577,854 (-)NCBICelera
Cytogenetic Map14q32.32NCBI
HuRef1483,573,751 - 83,698,598 (-)NCBIHuRef
CHM1_114103,336,156 - 103,461,595 (-)NCBICHM1_1
T2T-CHM13v2.01497,168,625 - 97,293,800 (-)NCBIT2T-CHM13v2.0
Cdc42bpb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912111,259,406 - 111,347,985 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12111,259,410 - 111,344,152 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3812111,292,972 - 111,379,313 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12111,292,976 - 111,377,718 (-)Ensemblmm10GRCm38
MGSCv3712112,531,183 - 112,615,929 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3612111,740,787 - 111,825,167 (-)NCBIMGSCv36mm8
Celera12112,487,034 - 112,573,080 (-)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1260.94NCBI
Cdc42bpb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555382,024,776 - 2,113,211 (-)Ensembl
ChiLan1.0NW_0049555382,023,681 - 2,113,213 (-)NCBIChiLan1.0ChiLan1.0
CDC42BPB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215104,084,676 - 104,212,688 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114103,301,174 - 103,429,186 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01483,551,870 - 83,679,888 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114103,367,060 - 103,447,382 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14103,367,060 - 103,451,989 (-)EnsemblpanPan2panpan1.1
CDC42BPB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1870,809,943 - 70,915,922 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl870,811,023 - 71,033,324 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha870,322,386 - 70,428,050 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0871,087,229 - 71,192,642 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl871,087,236 - 71,193,245 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1870,750,905 - 70,856,255 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0870,815,280 - 70,920,989 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0871,215,615 - 71,320,970 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cdc42bpb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086403,169,826 - 3,219,970 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936835975,960 - 1,026,025 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936835975,941 - 1,026,046 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC42BPB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.27128,824,316 - 128,887,793 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDC42BPB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12480,894,777 - 81,024,998 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605368,085,087 - 68,224,199 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdc42bpb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247341,623,956 - 1,722,309 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247341,624,001 - 1,718,427 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Cdc42bpb
518 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:168
Count of miRNA genes:105
Interacting mature miRNAs:137
Transcripts:ENSRNOT00000039059
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)6122549046137801795Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6125628133137801795Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1300076Glom8Glomerulus QTL 879e-09kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat

Markers in Region
RH127478  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26130,333,997 - 130,334,182 (+)MAPPERmRatBN7.2
Rnor_6.06135,747,029 - 135,747,213NCBIRnor6.0
Rnor_5.06144,667,216 - 144,667,400UniSTSRnor5.0
RGSC_v3.46136,054,171 - 136,054,355UniSTSRGSC3.4
Celera6127,891,276 - 127,891,460UniSTS
RH 3.4 Map6781.0UniSTS
Cytogenetic Map6q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 88 59 6 352 188 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000039059   ⟹   ENSRNOP00000036487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6136,154,905 - 136,237,570 (-)Ensembl
mRatBN7.2 Ensembl6130,333,712 - 130,416,377 (-)Ensembl
Rnor_6.0 Ensembl6135,746,754 - 135,830,086 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000080623   ⟹   ENSRNOP00000075663
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6136,156,026 - 136,237,570 (-)Ensembl
mRatBN7.2 Ensembl6130,334,833 - 130,416,377 (-)Ensembl
Rnor_6.0 Ensembl6135,747,740 - 135,829,953 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000157383   ⟹   ENSRNOP00000108806
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6136,154,905 - 136,237,570 (-)Ensembl
RefSeq Acc Id: NM_053620   ⟹   NP_446072
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,154,905 - 136,237,570 (-)NCBI
mRatBN7.26130,333,712 - 130,416,377 (-)NCBI
Rnor_6.06135,746,743 - 135,829,994 (-)NCBI
Rnor_5.06144,585,365 - 144,667,686 (+)NCBI
RGSC_v3.46136,053,885 - 136,136,234 (-)RGD
Celera6127,890,990 - 127,973,161 (-)RGD
Sequence:
RefSeq Acc Id: XM_006240562   ⟹   XP_006240624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,154,906 - 136,241,259 (-)NCBI
mRatBN7.26130,333,712 - 130,416,631 (-)NCBI
Rnor_6.06135,746,744 - 135,830,144 (-)NCBI
Rnor_5.06144,585,365 - 144,667,686 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005505433
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,156,040 - 136,241,259 (-)NCBI
mRatBN7.26130,334,848 - 130,416,289 (-)NCBI
RefSeq Acc Id: NP_446072   ⟸   NM_053620
- UniProtKB: O54875 (UniProtKB/Swiss-Prot),   Q7TT49 (UniProtKB/Swiss-Prot),   A6KBQ3 (UniProtKB/TrEMBL),   A6KBQ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240624   ⟸   XM_006240562
- Peptide Label: isoform X1
- UniProtKB: A6KBQ2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075663   ⟸   ENSRNOT00000080623
Ensembl Acc Id: ENSRNOP00000036487   ⟸   ENSRNOT00000039059
Ensembl Acc Id: ENSRNOP00000108806   ⟸   ENSRNOT00000157383
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TT49-F1-model_v2 AlphaFold Q7TT49 1-1713 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694839
Promoter ID:EPDNEW_R5361
Type:initiation region
Name:Cdc42bpb_1
Description:CDC42 binding protein kinase beta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06135,830,085 - 135,830,145EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621753 AgrOrtholog
BioCyc Gene G2FUF-35853 BioCyc
Ensembl Genes ENSRNOG00000009675 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000039059 ENTREZGENE
  ENSRNOT00000039059.4 UniProtKB/Swiss-Prot
  ENSRNOT00000157383 ENTREZGENE
Gene3D-CATH 1.20.5.340 UniProtKB/Swiss-Prot
  2.30.29.30 UniProtKB/Swiss-Prot
  3.30.60.20 UniProtKB/Swiss-Prot
  Phosphorylase Kinase, domain 1 UniProtKB/Swiss-Prot
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot
InterPro AGC-kinase_C UniProtKB/Swiss-Prot
  C1-like_sf UniProtKB/Swiss-Prot
  CNH_dom UniProtKB/Swiss-Prot
  CRIB_dom UniProtKB/Swiss-Prot
  DAG/PE-bd UniProtKB/Swiss-Prot
  KELK UniProtKB/Swiss-Prot
  Kinase-like_dom_sf UniProtKB/Swiss-Prot
  MRCKB_STKc UniProtKB/Swiss-Prot
  Myotonic_dystrophy_kinase_coil UniProtKB/Swiss-Prot
  PE/DAG-bd UniProtKB/Swiss-Prot
  PH-like_dom_sf UniProtKB/Swiss-Prot
  PH_domain UniProtKB/Swiss-Prot
  Prot_kinase_dom UniProtKB/Swiss-Prot
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot
  Rho-assoc_Ser/Thr_Kinase UniProtKB/Swiss-Prot
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot
KEGG Report rno:113960 UniProtKB/Swiss-Prot
NCBI Gene 113960 ENTREZGENE
PANTHER MYOTONIC DYSTROPHY S/T KINASE-RELATED UniProtKB/Swiss-Prot
  PTHR22988:SF34 UniProtKB/Swiss-Prot
Pfam C1_1 UniProtKB/Swiss-Prot
  CNH UniProtKB/Swiss-Prot
  DMPK_coil UniProtKB/Swiss-Prot
  KELK UniProtKB/Swiss-Prot
  PH_MRCK UniProtKB/Swiss-Prot
  Pkinase UniProtKB/Swiss-Prot
PhenoGen Cdc42bpb PhenoGen
PRINTS DAGPEDOMAIN UniProtKB/Swiss-Prot
PROSITE AGC_KINASE_CTER UniProtKB/Swiss-Prot
  CNH UniProtKB/Swiss-Prot
  CRIB UniProtKB/Swiss-Prot
  PH_DOMAIN UniProtKB/Swiss-Prot
  PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot
  ZF_DAG_PE_1 UniProtKB/Swiss-Prot
  ZF_DAG_PE_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000009675 RatGTEx
SMART CNH UniProtKB/Swiss-Prot
  PBD UniProtKB/Swiss-Prot
  S_TK_X UniProtKB/Swiss-Prot
  S_TKc UniProtKB/Swiss-Prot
  SM00109 UniProtKB/Swiss-Prot
  SM00233 UniProtKB/Swiss-Prot
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot
  SSF56112 UniProtKB/Swiss-Prot
  SSF57889 UniProtKB/Swiss-Prot
  Tricorn protease domain 2 UniProtKB/Swiss-Prot
UniProt A0A0G2KB58_RAT UniProtKB/TrEMBL
  A6KBQ2 ENTREZGENE, UniProtKB/TrEMBL
  A6KBQ3 ENTREZGENE, UniProtKB/TrEMBL
  A6KBQ4_RAT UniProtKB/TrEMBL
  A6KBQ5_RAT UniProtKB/TrEMBL
  MRCKB_RAT UniProtKB/Swiss-Prot
  O54875 ENTREZGENE
  Q7TT49 ENTREZGENE
UniProt Secondary O54875 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-13 Cdc42bpb  CDC42 binding protein kinase beta  Cdc42bpb  CDC42 binding protein kinase beta (DMPK-like)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-26 Cdc42bpb  CDC42 binding protein kinase beta (DMPK-like)  Cdc42bpb  Cdc42 binding protein kinase beta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-12-14 Cdc42bpb  Cdc42-binding protein kinase beta      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Cdc42bpb        Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains contains a kinase domain, cysteine-rich domain, pleckstrin-like domain, and p21 GTPase binding domain 632451