Gpr176 (G protein-coupled receptor 176)

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Gene: Gpr176 (G protein-coupled receptor 176) Rattus norvegicus

Analyze

Symbol:

Gpr176

Name:

G protein-coupled receptor 176

RGD ID:

621718

Description:

Predicted to have G protein-coupled receptor activity. Predicted to be involved in adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway and circadian behavior. Predicted to localize to plasma membrane. Orthologous to human GPR176 (G protein-coupled receptor 176); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

G-protein coupled receptor AGR9; gene model 1012, (NCBI); Gm1012; Gpr; probable G-protein coupled receptor 176; putative G protein coupled receptor; RBU-15

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	105,236,794 - 105,337,664 (-)	NCBI
Rnor_6.0 Ensembl	3	110,042,853 - 110,140,756 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	110,042,853 - 110,140,756 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	116,588,548 - 116,686,465 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	104,699,853 - 104,801,217 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	104,596,280 - 104,603,263 (-)	NCBI
Celera	3	104,154,931 - 104,254,445 (-)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

colon cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

1,2-dichloroethane (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

aflatoxin B1 (ISO)

aflatoxin B2 (ISO)

ammonium chloride (EXP)

amphetamine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

capsaicin (EXP)

carbon nanotube (ISO)

choline (ISO)

cisplatin (EXP,ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

fenvalerate (EXP)

ferroheme b (ISO)

folic acid (ISO)

furan (EXP)

genistein (ISO)

gentamycin (EXP)

heme b (ISO)

L-methionine (ISO)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (EXP)

oxaliplatin (EXP)

phenylmercury acetate (ISO)

potassium chromate (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

testosterone (EXP)

tetrachloromethane (ISO)

titanium dioxide (ISO)

topotecan (EXP)

triclosan (ISO)

valproic acid (ISO)

vincaleukoblastine (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ISO)

circadian behavior (ISO,ISS)

G protein-coupled receptor signaling pathway (IBA,ISO,ISS)

Cellular Component

integral component of membrane (IEA)

plasma membrane (IBA,ISO,ISS)

Molecular Function

G protein-coupled receptor activity (IBA,ISO,ISS)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Hata S, etal., Biochim Biophys Acta 1995 Mar 14;1261(1):121-5.
3.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	RGD automated data pipeline
5.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8018717	PMID:26882873

Genomics

Comparative Map Data

Gpr176
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	105,236,794 - 105,337,664 (-)	NCBI
Rnor_6.0 Ensembl	3	110,042,853 - 110,140,756 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	110,042,853 - 110,140,756 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	116,588,548 - 116,686,465 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	104,699,853 - 104,801,217 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	104,596,280 - 104,603,263 (-)	NCBI
Celera	3	104,154,931 - 104,254,445 (-)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

GPR176
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	15	39,799,032 - 39,920,892 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	15	39,799,008 - 39,920,266 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	15	39,795,049 - 39,920,939 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	15	40,091,209 - 40,212,467 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	37,880,223 - 38,000,385 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	15	37,880,222 - 38,000,385	NCBI
Celera	15	16,856,199 - 16,976,371 (-)	NCBI
Cytogenetic Map	15	q14-q15.1	NCBI
HuRef	15	16,935,032 - 17,057,623 (-)	NCBI		HuRef
CHM1_1	15	40,210,585 - 40,332,721 (-)	NCBI		CHM1_1

Gpr176
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	118,107,577 - 118,205,022 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	2	118,107,591 - 118,203,900 (-)	Ensembl
GRCm38	2	118,277,096 - 118,374,549 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	118,277,110 - 118,373,419 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	118,102,834 - 118,199,155 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	2	117,968,551 - 118,064,752 (-)	NCBI			mm8
Celera	2	119,421,829 - 119,523,000 (-)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI

Gpr176
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	6,735,636 - 6,878,982 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955416	6,735,790 - 6,879,078 (-)	NCBI	ChiLan1.0	ChiLan1.0

GPR176
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	15	36,995,149 - 37,114,516 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	36,995,149 - 37,007,073 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	15	18,739,092 - 18,858,618 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

GPR176
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	6,990,463 - 7,120,361 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	6,992,849 - 7,119,992 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	7,045,213 - 7,174,733 (-)	NCBI
ROS_Cfam_1.0	30	7,116,881 - 7,246,688 (-)	NCBI
UMICH_Zoey_3.1	30	7,040,657 - 7,171,678 (-)	NCBI
UNSW_CanFamBas_1.0	30	7,146,150 - 7,276,513 (-)	NCBI
UU_Cfam_GSD_1.0	30	7,275,692 - 7,406,107 (-)	NCBI

Gpr176
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	85,450,184 - 85,565,052 (-)	NCBI
SpeTri2.0	NW_004936471	3,298,247 - 3,413,093 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GPR176
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	131,355,327 - 131,494,963 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	131,355,332 - 131,494,967 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	146,588,375 - 146,671,430 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GPR176
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	43,085,416 - 43,205,075 (+)	NCBI

Gpr176
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624804	7,119,104 - 7,249,561 (-)	NCBI

Position Markers

RH144016

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	3	110,140,888 - 110,141,027	NCBI	Rnor6.0
Rnor_5.0	3	116,686,597 - 116,686,736	UniSTS	Rnor5.0
RGSC_v3.4	3	104,801,339 - 104,801,478	UniSTS	RGSC3.4
Celera	3	104,254,577 - 104,254,716	UniSTS
RH 3.4 Map	3	915.5	UniSTS
Cytogenetic Map	3	q35	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	10639528	127023997	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	10639528	127023997	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	30114912	123700444	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	30846101	172879276	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	39248391	140271184	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	43295930	163640485	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	43295930	163640485	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	45406058	127023997	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	45406058	177699992	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	48561928	155263151	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	48562146	115249962	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	48562146	115249962	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	51821836	124513579	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	51822008	120917851	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	54630948	119830094	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	54630948	119830094	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	54630948	119830094	Rat
1581568	Rf53	Renal function QTL 53			total urine protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	58204463	170534769	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	61241033	165369047	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	62922868	127023997	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	66711607	119830094	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	66711607	119830094	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	72672290	127023997	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	72973445	127023997	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	78700444	123700444	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	total urine protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	81136227	154416635	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	83817637	119509260	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	88910015	133910015	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	94788365	139788365	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	97009185	142009185	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	99465522	168732722	Rat
1582219	Bw63	Body weight QTL 63	3.8	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	3	100730984	119830094	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	101058963	146058963	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	102152812	155263151	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	102466149	147466149	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	103141814	176418101	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	103141814	176418101	Rat
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	103141814	176418101	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	103141944	170934860	Rat
1582216	Bw65	Body weight QTL 65	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	106900427	119830094	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	777
Count of miRNA genes:	303
Interacting mature miRNAs:	393
Transcripts:	ENSRNOT00000007882
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									19		5
Low	3	33	20	4	19	4	8	11	49	35	29	11	8
Below cutoff		10	31	31		31			6		7

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001270986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D38450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000007882 ⟹ ENSRNOP00000007882

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	110,042,853 - 110,140,756 (-)	Ensembl

RefSeq Acc Id:

NM_001270986 ⟹ NP_001257915

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	105,236,795 - 105,337,226 (-)	NCBI
Rnor_6.0	3	110,042,853 - 110,140,756 (-)	NCBI
Rnor_5.0	3	116,588,548 - 116,686,465 (-)	NCBI
Celera	3	104,154,931 - 104,254,445 (-)	NCBI

Sequence:

show sequence

TCCCTCCCACCCCATCTCGAGGACGGCTGGTTAGGCGATGAGCAGACGTGAGGGGCTAGCCGGC
TGCCCGGCTCTGCAGGACGCTGCCTGGCTCCCGAGCGTCGGTCCCTCCGCGCCCGGGGCAGGAG
CGGCTGTGCGCTGGGGCTCAGAGGCCGGGCAGGAGAGTACAAGCCCCCGGCTTCGCTATGGGGC
ACAACGGCAGCTGGGTGTCACCGAACACCAGCCACCCGCGTAACACGTCGGGCGCCCAGGCTGG
CGCCAACAGCAGCGCGTTCGGGGAGCTGAGCGAGGCGCAGCTGTACCGCCAGTTCACCACCACC
GTGCAGGTCGTCATCTTCATTGGTTCGCTGCTCGGGAACTTCACGGTGTTATGGTCAACCTGCC
GCACGACCGTGTTCAAATCTGTCACCAACAGGTTCATTAAAAACCTGGCCTGCTCCGGGATTTG
TGCCAGCGTGGTCTGCGTGCCCTTCGACATCATCCTGAGCACCAGCCCTCACTGCTGCTGGTGG
ATCTACACGATGCTCTTCTGCAAGGTGCTTAAATTCCTACACAAGGTGTTCTGCTCGGTGACTG
TCCTCAGCTTTCCTGCCATTGCCCTGGACAGGTACTATTCAGTCCTCTACCCTCTGGAGAGAAA
AATCTCTGACGCCAAGTCTCGGGAACTAGTGATGTACATCTGGGCCCATGCAGTGGTGGCCAGC
GTCCCTGTGTTTGCTGTGACCAATGTAGCTGACATCTATGCTACATCCACCTGCACGGAAGTCT
GGAGCAACTCCTTGGGCCACCTGGTGTATGTCCTGATCTACAACGTCACCACGGTCATTGTGCC
TGTGGCTGTGGTATTCCTCTTTCTTATCCTGATCCGGAGGGCCCTGAGTGCCAGTCAGAAGAAG
AAAGTCATCATCGCTGCACTGAGGACCCCACAGAACACCATCTCTATCCCCTATGCATCCCAGC
GGGAGGCAGAGCTACATGCCACCCTGCTCTCCATGGTGACAGTTTTCATCCTCTGCAGCGTACC
CTATGCCACCCTGGTTGTCTACCAGACTGTGCTCAATGTACCTAACACTTCTGTGTTCTTGCTT
CTCACTGCTATTTGGCTGCCCAAAGTCTCACTGTTGGCCAACCCTGTGCTCTTCCTAACTGTGA
ACAGATCAGTACGCAAATGCTTGGTGGGGACCCTGGTGCAGTTGCACCACCGGTACAGTCGCCG
CAATGTGGTTAGTACAGGGAGTGGGGTGGTTGAGCCTAGCCTTGAGCCCAGCATGCGCTCTGGT
AGCCAGCTCTTGGAGATGTTCCACATTGGACAGCAACAGATCTTTAAGCCCTCGGAGGATGAGG
AAGAGAGTGAGGCCAAGTATCTTGGCTCAACTGATTTCCAGGCCAAGGAGGTACTCACCTCCTC
CCCAGAGGGCGAGGAGTCACAGCTTGCACCCTCTGTGCCGCCTCCAGGCACAGTAGACTCTGTA
TCTCGGGTGTCCCCAGTAGCCCCCGTGGAACCTGGCATATTCCCTGATAAGTATTCCCTGCAGT
TTGGCTTTGGGCCTTTCGAGTTGCCCCCTCAGTGGCTCTCTGAGACTCGAAATAGCAAGAAGAG
GCTGCTTCCCCCACTGGGCAATACCCCAGAAGAGCTGATCCAGACAAAGGTGCCCAGAGTGAGC
AGGGTGGAGCGGAAGATGAGCAGAAACAATAAAGTGAGCATTTTTCCAAAGGTAGACTCCTAGC
GAGGACTATGAGTGCCTGAGAGTGTAAGGGAGCTTGTATATTCCTGTTCTCCCTTCCCTCTGGC
TGCCACTGTGGGGCGATAACTCCTTTACATGGCAAATGCTTCTGAATGAAAGGGAAGTCTACAG
AAAACCCAATGTCCTCTTTATTGAGGGAGTATATATCTATCTTAGTGATCTGTGTCCTTCATCA
CATTCAGTGTAAGCTGGGCAGAATGGAACAGGTCTGAGGGCTCTCTGACACATTTTCTGGGAGA
TTCCTCCTTTTTTTGTGTGCAGCAAAGAACTCAAATGGAGCAGGCACTCCAAGGAGGCCCAGGA
TAATTCTGGGCTTCAATGGCCACAGAGAAGAAGCTAATTTGTTTTTAAAATGTTTGTTTTGTTT
TGTTTTGTTTTTTTTTTTTTGAGACTGGATTTCTCTATGTAGCCCCACCCTACAGATTGGGCTG
GCCTTGAACTCAGAGAGCCACCTGTCTCTGCCTTCTGAGTGCTGGGCTTAAAGGTCTGTGCCCA
CATGCCCACTTAAGAAGCCTATTTGGGTAGCTAAATAAGAATAACAAATAGGAAAATATCTGAG
AAGACAGAGCCATGGTGTCGAATGGTTTTTGCTAGATTTCACAATCACCCAACTCCTGGTTGCT
AATACCCCTCGTCTGGATTTCTGGGTCATAAAGGGGGGGATGACTGGATTTATCTTAGGATAGA
CAGGGCAGTGTCTGAGGGAGCCTTTTTGTCCTTGATTATCTCTCCACCCTGTTGGTATCACCAA
GGCCTCCAACAAATGTACCTGCTTCCACCAGTCAGCCATGCTGCCTGGAAACCACTGCCAACCA
TTCACTGTGTGTCCATTTTATCAGCAACAAGAAGGGAAGATTTGTGGTGGCGAAGACAGGCTGA
GAAATGCCCACCATGAATAACCTTTTTTCTCTCTCACGTGATTAAGAGCAAAAGACTAGACTCA
GTATAGGGGGGTATAGGCACAAAGTAAAACGTCCTAACTGGCAAATGTTTGGAATTAAAAGGTG
CTTAAGAAATGTAGGTGGCATGCACTGGGTCGTTTGGCACCATTAAGGTAAAAATCCTTGATTA
GCACAAGCGACTCTGCCCTAAGACTTATTAGTTTGACATACAGGACACGCCCACCCGCCAGTCT
CATTTTCAGTGTGTTCTGATTCTGGATCCCACAGAAGGTGAGCAGAGCAGGAGAAATAATGATT
GCAAATGCTAAAGCAATTCCCACCCTGATTTAGCACTCCATCCTCTACTTCCAATGAAGTTCAG
GTATGAGCCATGGTGGATGGGAGAATGTGCTCTCTCAGCAGCTCAGTGCCCTGGCTCTCATGTG
TGAGCCACTCTGGGACTGATGTACCAGACCTAATTCAAACCCAACTCTCCCCTCATACATCAAG
TTGGGAGCTCTGCTCTTCTTAGGGTGTTTTGTTCTTGTTTGTGGTCCTTGGTGGAGCCAGTCGG
GCACCTTGAATGGATAGGTATTCCTACGAGCAAACTTCTACATCTCAAAGGCAGTGGTCCTAGC
AGCACGTTTAGCCATGCTGGCCCATCGCCCCTAAGAGGAAGCTCAGCCCGTGTATAGGGAGACT
CCTTTTCTTTTCTTCTATTGTGTTATGTCTTGTGAACCCCAACATCTCCTCCTTGGAGAGGGGG
CGCCTTCCTTTCTGTGCACTGCCTCACAGACTTGTTTTCTCACGTCAGAGACAGGGTACTGTGC
CCCTCTTGTGGCTCTGTGGCCCTCTGGGCCCTGTGTACCTGCCATCTGTAGCTCTTTGTCCTGA
TGCTGTGTTAATGCTGTGGCCCTCCAAGCTCATCTTTCAAAGCCTTCTTAATTGTTACAGCTTT
TACTAAGGGGAAAAATAATCCCTCAGAGAATCCTATGTACCAGAGAAGAACCTGTGAAATGTAC
GTGTGTTGCTGTCGTCCTGACCTGTATGTGTGACTTAATAAATTCTCAACAGCGGAGTTTGGTT
CACCAAATTCTCATGTATGTTGGAAAGAGAAGGCTGACGTCTAGCAGGCTGTCGCCGAGTGTAT
TTCTATACTCTTTGAAGAATAACATTTTAATAAAAATTATAAAGCTGT

hide sequence

RefSeq Acc Id:

XM_017591434 ⟹ XP_017446923

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	105,236,794 - 105,337,664 (-)	NCBI
Rnor_6.0	3	110,042,973 - 110,140,470 (-)	NCBI

Sequence:

show sequence

CGAGGCGCAGCTGTACCGCCAGTTCACCACCACCGTGCAGGTCGTCATCTTCATTGGTTCGCTG
CTCGTGAGCGTATTCCAAGGAGTTGCTGGATGAGGCAGACTGCCCTGAAGACTTCTACGTCCCC
ATCCCCTGAACTGTGACTTTGTAATGTCACAGGGTAATCAGACCTAGAATTCAGATTGCAGATG
GAATGAAGGTTGCTAATCGGATGACTTTAAAATGGATGATTCTGTACCGTCTGGAGTCACCTTG
CCCTCTGGCGGTGCTAAGCTCCTTGCTGTTAATGAACTTGTGCTGTATGTGACCTTCCTGCACG
GTGGTGGAGCTCGCCAATCCTGCCCCTCAGGGAACTTCACGGTGTTATGGTCAACCTGCCGCAC
GACCGTGTTCAAATCTGTCACCAACAGGTTCATTAAAAACCTGGCCTGCTCCGGGATTTGTGCC
AGCGTGGTCTGCGTGCCCTTCGACATCATCCTGAGCACCAGCCCTCACTGCTGCTGGTGGATCT
ACACGATGCTCTTCTGCAAGGTGCTTAAATTCCTACACAAGGTGTTCTGCTCGGTGACTGTCCT
CAGCTTTCCTGCCATTGCCCTGGACAGGTACTATTCAGTCCTCTACCCTCTGGAGAGAAAAATC
TCTGACGCCAAGTCTCGGGAACTAGTGATGTACATCTGGGCCCATGCAGTGGTGGCCAGCGTCC
CTGTGTTTGCTGTGACCAATGTAGCTGACATCTATGCTACATCCACCTGCACGGAAGTCTGGAG
CAACTCCTTGGGCCACCTGGTGTATGTCCTGATCTACAACGTCACCACGGTCATTGTGCCTGTG
GCTGTGGTATTCCTCTTTCTTATCCTGATCCGGAGGGCCCTGAGTGCCAGTCAGAAGAAGAAAG
TCATCATCGCTGCACTGAGGACCCCACAGAACACCATCTCTATCCCCTATGCATCCCAGCGGGA
GGCAGAGCTACATGCCACCCTGCTCTCCATGGTGACAGTTTTCATCCTCTGCAGCGTACCCTAT
GCCACCCTGGTTGTCTACCAGACTGTGCTCAATGTACCTAACACTTCTGTGTTCTTGCTTCTCA
CTGCTATTTGGCTGCCCAAAGTCTCACTGTTGGCCAACCCTGTGCTCTTCCTAACTGTGAACAG
ATCAGTACGCAAATGCTTGGTGGGGACCCTGGTGCAGTTGCACCACCGGTACAGTCGCCGCAAT
GTGGTTAGTACAGGGAGTGGGGTGGTTGAGCCTAGCCTTGAGCCCAGCATGCGCTCTGGTAGCC
AGCTCTTGGAGATGTTCCACATTGGACAGCAACAGATCTTTAAGCCCTCGGAGGATGAGGAAGA
GAGTGAGGCCAAGTATCTTGGCTCAACTGATTTCCAGGCCAAGGAGGTACTCACCTCCTCCCCA
GAGGGCGAGGAGTCACAGCTTGCACCCTCTGTGCCGCCTCCAGGCACAGTAGACTCTGTATCTC
GGGTGTCCCCAGTAGCCCCCGTGGAACCTGGCATATTCCCTGATAAGTATTCCCTGCAGTTTGG
CTTTGGGCCTTTCGAGTTGCCCCCTCAGTGGCTCTCTGAGACTCGAAATAGCAAGAAGAGGCTG
CTTCCCCCACTGGGCAATACCCCAGAAGAGCTGATCCAGACAAAGGTGCCCAGAGTGAGCAGGG
TGGAGCGGAAGATGAGCAGAAACAATAAAGTGAGCATTTTTCCAAAGGTAGACTCCTAGCGAGG
ACTATGAGTGCCTGAGAGTGTAAGGGAGCTTGTATATTCCTGTTCTCCCTTCCCTCTGGCTGCC
ACTGTGGGGCGATAACTCCTTTACATGGCAAATGCTTCTGAATGAAAGGGAAGTCTACAGAAAA
CCCAATGTCCTCTTTATTGAGGGAGTATATATCTATCTTAGTGATCTGTGTCCTTCATCACATT
CAGTGTAAGCTGGGCAGAATGGAACAGGTCTGAGGGCTCTCTGACACATTTTCTGGGAGATTCC
TCCTTTTTTTGTGTGCAGCAAAGAACTCAAATGGAGCAGGCACTCCAAGGAGGCCCAGGATAAT
TCTGGGCTTCAATGGCCACAGAGAAGAAGCTAATTTGTTTTTAAAATGTTTGTTTTGTTTTGTT
TTGTTTTTTTTTTTTTGAGACTGGATTTCTCTATGTAGCCCCACCCTACAGATTGGGCTGGCCT
TGAACTCAGAGAGCCACCTGTCTCTGCCTTCTGAGTGCTGGGCTTAAAGGTCTGTGCCCACATG
CCCACTTAAGAAGCCTATTTGGGTAGCTAAATAAGAATAACAAATAGGAAAATATCTGAGAAGA
CAGAGCCATGGTGTCGAATGGTTTTTGCTAGATTTCACAATCACCCAACTCCTGGTTGCTAATA
CCCCTCGTCTGGATTTCTGGGTCATAAAGGGGGGGATGACTGGATTTATCTTAGGATAGACAGG
GCAGTGTCTGAGGGAGCCTTTTTGTCCTTGATTATCTCTCCACCCTGTTGGTATCACCAAGGCC
TCCAACAAATGTACCTGCTTCCACCAGTCAGCCATGCTGCCTGGAAACCACTGCCAACCATTCA
CTGTGTGTCCATTTTATCAGCAACAAGAAGGGAAGATTTGTGGTGGCGAAGACAGGCTGAGAAA
TGCCCACCATGAATAACCTTTTTTCTCTCTCACGTGATTAAGAGCAAAAGACTAGACTCAGTAT
AGGGGGGTATAGGCACAAAGTAAAACGTCCTAACTGGCAAATGTTTGGAATTAAAAGGTGCTTA
AGAAATGTAGGTGGCATGCACTGGGTCGTTTGGCACCATTAAGGTAAAAATCCTTGATTAGCAC
AAGCGACTCTGCCCTAAGACTTATTAGTTTGACATACAGGACACGCCCACCCGCCAGTCTCATT
TTCAGTGTGTTCTGATTCTGGATCCCACAGAAGGTGAGCAGAGCAGGAGAAATAATGATTGCAA
ATGCTAAAGCAATTCCCACCCTGATTTAGCACTCCATCCTCTACTTCCAATGAAGTTCAGGTAT
GAGCCATGGTGGATGGGAGAATGTGCTCTCTCAGCAGCTCAGTGCCCTGGCTCTCATGTGTGAG
CCACTCTGGGACTGATGTACCAGACCTAATTCAAACCCAACTCTCCCCTCATACATCAAGTTGG
GAGCTCTGCTCTTCTTAGGGTGTTTTGTTCTTGTTTGTGGTCCTTGGTGGAGCCAGTCGGGCAC
CTTGAATGGATAGGTATTCCTACGAGCAAACTTCTACATCTCAAAGGCAGTGGTCCTAGCAGCA
CGTTTAGCCATGCTGGCCCATCGCCCCTAAGAGGAAGCTCAGCCCGTGTATAGGGAGACTCCTT
TTCTTTTCTTCTATTGTGTTATGTCTTGTGAACCCCAACATCTCCTCCTTGGAGAGGGGGCGCC
TTCCTTTCTGTGCACTGCCTCACAGACTTGTTTTCTCACGTCAGAGACAGGGTACTGTGCCCCT
CTTGTGGCTCTGTGGCCCTCTGGGCCCTGTGTACCTGCCATCTGTAGCTCTTTGTCCTGATGCT
GTGTTAATGCTGTGGCCCTCCAAGCTCATCTTTCAAAGCCTTCTTAATTGTTACAGCTTTTACT
AAGGGGAAAAATAATCCCTCAGAGAATCCTATGTACCAGAGAAGAACCTGTGAAATGTACGTGT
GTTGCTGTCGTCCTGACCTGTATGTGTGACTTAATAAATTCTCAACAGCGGA

hide sequence

RefSeq Acc Id:

XM_017591435 ⟹ XP_017446924

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	110,042,973 - 110,079,027 (-)	NCBI

Sequence:

show sequence

CGAGTGTTCCAAGGTCTCTCATTCTCTGTGTAATGCCTGCCTGTGCGTCTCTGTATTTGTTCTC
ATTGCTGCGGGAGGCCTGAGCAAGGAGTCAGCATCAGAGTCTTTTTGGACCTTGTTGGTAAACT
TTGGCACTGCTTTCCCAGCAAGCCTCACTGACTTCTGTTTCTCCAGGTGGGAACCGAAACCTGT
GTGTCCTAATGGCTGATGTGTGCTGTCTTCACTTAAAATCTCCACAAAGGTGGATTTGAAGCAG
AAGCCATTTGGAAAGGTTACACATGAGAAGGAAAGAGTGCTGATGTGCGTGCAAGGTTACCTGG
GGTGTCTGATTTACCCAGCTCTCTGCAGAAGTCACCTCATGGGCCCAGGACCTTGTTGTCCCCT
TGCTCTGTAGATCAAGTAGAGCCTGTGGTACTCCTATGCAGTGAGGAGGAACTCACGGAATGTC
ATATTAGGGAGAGACGTGTAGAGAGCAACTGCGTAGCATGCTACGTTAGAGAGAGGCTTCTGTG
GAGGAACATGGATGGCATGTATATTAGAGAACTTCCCCCATCCAGCAGCTGCAACTTGACCTTT
CTCTTGCCCGCTGCTAAAACAGGGTGAACCGACCTGGGCATCCCTCCTTCTGTGAGGATTTTTC
TAGCATTTGAGCAGTCCTGGCGTCCTGTTGTGACTCCACCTAGCAAACTTCATGCTGCTTTCTG
AATAGGTTGAACATCGGTCGGTTACAAACAGTCCAGAGACTGAAACTATGGCCACAGTGAGAGA
GCAGAGAGGTAGAGAGGGAAGAAATAGAAGAGTTTCAAGTTTTTAGGACGGAAGCTCCAAGTAC
TGAAGTTCCTAACTAATCTAAAATGCTGTGAGAGAGTGAGTCAGATCCTGTGAGGTGTAGAGTG
TGGGAGGGGTACCAAATGGAGAGACTTGGCAGACTACCGCAGGAGCAGATGTGTTACGAGTGTA
TCTCATTGGAGGTGACAGAATCAAGCGCCCAGCTGCATGTGTGCTTAGAGGTAAGATGTTTAGC
AAAAACTGGAATTGCCAGGGAATTAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACA
AAACAAAACATCCCCCATCTGTGTTGGAGATTGGCAAGGCTCAAAGACTGATAAGAACTGCGTA
ATTGTGGAGAGTTAGAATGTTGCAGATCAGAGACTGATTACGTTGGGCTATCATTAATCCCCTT
GTGCTATTCATTGCCCATCCCTGTGTTTGACCCAACATCTTTTTGACCATTGGGTAAAACCTTT
GAAAGGTATCCTTAGCAGAGCCCCTCACAAATCCAGAAGTTCAATACGTCATCAGATAGACCCC
CAGCAGACTTTCCTGCTCCGCTGTGTGGACAGTGCCAGTGTATTTGCTAAGCACATTGATTTAT
GACTCTTCTTTCTCTTGTGACTAATAAATGCCCATGGAACCTCTACAGGGAACGCTGTTACCAG
GAGCTTTGAAGAATCCCATATTTTACTGAGAAATTGGGGCTCTTTTTCTGAGCTCTTCTATCTG
GAGGCAGTTTTGTTTGAGAGAAAACAAGGCAGATCGCCTTCCGGTAGCCACAAATCACAGCATG
GCGACCATATTTCCTGATTTCGCTAATTGGACTGAATGGGAGAAGTCGGACTGGAAAATTACAT
GACAAATAACTGTGATATTCAAATCAACTAATGTGAGAAGGGAAAGGTGGGAGCTGAAACGCTA
AAATGTTTGGGAACTTCACGGTGTTATGGTCAACCTGCCGCACGACCGTGTTCAAATCTGTCAC
CAACAGGTTCATTAAAAACCTGGCCTGCTCCGGGATTTGTGCCAGCGTGGTCTGCGTGCCCTTC
GACATCATCCTGAGCACCAGCCCTCACTGCTGCTGGTGGATCTACACGATGCTCTTCTGCAAGG
TGCTTAAATTCCTACACAAGGTGTTCTGCTCGGTGACTGTCCTCAGCTTTCCTGCCATTGCCCT
GGACAGGTACTATTCAGTCCTCTACCCTCTGGAGAGAAAAATCTCTGACGCCAAGTCTCGGGAA
CTAGTGATGTACATCTGGGCCCATGCAGTGGTGGCCAGCGTCCCTGTGTTTGCTGTGACCAATG
TAGCTGACATCTATGCTACATCCACCTGCACGGAAGTCTGGAGCAACTCCTTGGGCCACCTGGT
GTATGTCCTGATCTACAACGTCACCACGGTCATTGTGCCTGTGGCTGTGGTATTCCTCTTTCTT
ATCCTGATCCGGAGGGCCCTGAGTGCCAGTCAGAAGAAGAAAGTCATCATCGCTGCACTGAGGA
CCCCACAGAACACCATCTCTATCCCCTATGCATCCCAGCGGGAGGCAGAGCTACATGCCACCCT
GCTCTCCATGGTGACAGTTTTCATCCTCTGCAGCGTACCCTATGCCACCCTGGTTGTCTACCAG
ACTGTGCTCAATGTACCTAACACTTCTGTGTTCTTGCTTCTCACTGCTATTTGGCTGCCCAAAG
TCTCACTGTTGGCCAACCCTGTGCTCTTCCTAACTGTGAACAGATCAGTACGCAAATGCTTGGT
GGGGACCCTGGTGCAGTTGCACCACCGGTACAGTCGCCGCAATGTGGTTAGTACAGGGAGTGGG
GTGGTTGAGCCTAGCCTTGAGCCCAGCATGCGCTCTGGTAGCCAGCTCTTGGAGATGTTCCACA
TTGGACAGCAACAGATCTTTAAGCCCTCGGAGGATGAGGAAGAGAGTGAGGCCAAGTATCTTGG
CTCAACTGATTTCCAGGCCAAGGAGGTACTCACCTCCTCCCCAGAGGGCGAGGAGTCACAGCTT
GCACCCTCTGTGCCGCCTCCAGGCACAGTAGACTCTGTATCTCGGGTGTCCCCAGTAGCCCCCG
TGGAACCTGGCATATTCCCTGATAAGTATTCCCTGCAGTTTGGCTTTGGGCCTTTCGAGTTGCC
CCCTCAGTGGCTCTCTGAGACTCGAAATAGCAAGAAGAGGCTGCTTCCCCCACTGGGCAATACC
CCAGAAGAGCTGATCCAGACAAAGGTGCCCAGAGTGAGCAGGGTGGAGCGGAAGATGAGCAGAA
ACAATAAAGTGAGCATTTTTCCAAAGGTAGACTCCTAGCGAGGACTATGAGTGCCTGAGAGTGT
AAGGGAGCTTGTATATTCCTGTTCTCCCTTCCCTCTGGCTGCCACTGTGGGGCGATAACTCCTT
TACATGGCAAATGCTTCTGAATGAAAGGGAAGTCTACAGAAAACCCAATGTCCTCTTTATTGAG
GGAGTATATATCTATCTTAGTGATCTGTGTCCTTCATCACATTCAGTGTAAGCTGGGCAGAATG
GAACAGGTCTGAGGGCTCTCTGACACATTTTCTGGGAGATTCCTCCTTTTTTTGTGTGCAGCAA
AGAACTCAAATGGAGCAGGCACTCCAAGGAGGCCCAGGATAATTCTGGGCTTCAATGGCCACAG
AGAAGAAGCTAATTTGTTTTTAAAATGTTTGTTTTGTTTTGTTTTGTTTTTTTTTTTTTGAGAC
TGGATTTCTCTATGTAGCCCCACCCTACAGATTGGGCTGGCCTTGAACTCAGAGAGCCACCTGT
CTCTGCCTTCTGAGTGCTGGGCTTAAAGGTCTGTGCCCACATGCCCACTTAAGAAGCCTATTTG
GGTAGCTAAATAAGAATAACAAATAGGAAAATATCTGAGAAGACAGAGCCATGGTGTCGAATGG
TTTTTGCTAGATTTCACAATCACCCAACTCCTGGTTGCTAATACCCCTCGTCTGGATTTCTGGG
TCATAAAGGGGGGGATGACTGGATTTATCTTAGGATAGACAGGGCAGTGTCTGAGGGAGCCTTT
TTGTCCTTGATTATCTCTCCACCCTGTTGGTATCACCAAGGCCTCCAACAAATGTACCTGCTTC
CACCAGTCAGCCATGCTGCCTGGAAACCACTGCCAACCATTCACTGTGTGTCCATTTTATCAGC
AACAAGAAGGGAAGATTTGTGGTGGCGAAGACAGGCTGAGAAATGCCCACCATGAATAACCTTT
TTTCTCTCTCACGTGATTAAGAGCAAAAGACTAGACTCAGTATAGGGGGGTATAGGCACAAAGT
AAAACGTCCTAACTGGCAAATGTTTGGAATTAAAAGGTGCTTAAGAAATGTAGGTGGCATGCAC
TGGGTCGTTTGGCACCATTAAGGTAAAAATCCTTGATTAGCACAAGCGACTCTGCCCTAAGACT
TATTAGTTTGACATACAGGACACGCCCACCCGCCAGTCTCATTTTCAGTGTGTTCTGATTCTGG
ATCCCACAGAAGGTGAGCAGAGCAGGAGAAATAATGATTGCAAATGCTAAAGCAATTCCCACCC
TGATTTAGCACTCCATCCTCTACTTCCAATGAAGTTCAGGTATGAGCCATGGTGGATGGGAGAA
TGTGCTCTCTCAGCAGCTCAGTGCCCTGGCTCTCATGTGTGAGCCACTCTGGGACTGATGTACC
AGACCTAATTCAAACCCAACTCTCCCCTCATACATCAAGTTGGGAGCTCTGCTCTTCTTAGGGT
GTTTTGTTCTTGTTTGTGGTCCTTGGTGGAGCCAGTCGGGCACCTTGAATGGATAGGTATTCCT
ACGAGCAAACTTCTACATCTCAAAGGCAGTGGTCCTAGCAGCACGTTTAGCCATGCTGGCCCAT
CGCCCCTAAGAGGAAGCTCAGCCCGTGTATAGGGAGACTCCTTTTCTTTTCTTCTATTGTGTTA
TGTCTTGTGAACCCCAACATCTCCTCCTTGGAGAGGGGGCGCCTTCCTTTCTGTGCACTGCCTC
ACAGACTTGTTTTCTCACGTCAGAGACAGGGTACTGTGCCCCTCTTGTGGCTCTGTGGCCCTCT
GGGCCCTGTGTACCTGCCATCTGTAGCTCTTTGTCCTGATGCTGTGTTAATGCTGTGGCCCTCC
AAGCTCATCTTTCAAAGCCTTCTTAATTGTTACAGCTTTTACTAAGGGGAAAAATAATCCCTCA
GAGAATCCTATGTACCAGAGAAGAACCTGTGAAATGTACGTGTGTTGCTGTCGTCCTGACCTGT
ATGTGTGACTTAATAAATTCTCAACAGCGGA

hide sequence

RefSeq Acc Id:

XM_017591436 ⟹ XP_017446925

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	110,042,973 - 110,140,465 (-)	NCBI

Sequence:

show sequence

CGCAGCTGTACCGCCAGTTCACCACCACCGTGCAGGTCGTCATCTTCATTGGTTCGCTGCTCGG
AGTCAGCATCAGAGTCTTTTTGGACCTTGTTGGTAAACTTTGGCACTGCTTTCCCAGCAAGCCT
CACTGACTTCTGTTTCTCCAGGTGGGAACCGAAACCTGTGTGTCCTAATGGCTGATGTGTGCTG
TCTTCACTTAAAATCTCCACAAAGGTGGATTTGAAGCAGAAGCCATTTGGAAAGGTTACACATG
AGAAGGAAAGAGTGCTGATGTGCGTGCAAGGTTACCTGGGGTGTCTGATTTACCCAGCTCTCTG
CAGAAGTCACCTCATGGGCCCAGGACCTTGTTGTCCCCTTGCTCTGTAGATCAAGTAGAGCCTG
TGGTACTCCTATGCAGTGAGGAGGAACTCACGGAATGTCATATTAGGGAGAGACGTGTAGAGAG
CAACTGCGTAGCATGCTACGTTAGAGAGAGGCTTCTGTGGAGGAACATGGATGGCATGTATATT
AGAGAACTTCCCCCATCCAGCAGCTGCAACTTGACCTTTCTCTTGCCCGCTGCTAAAACAGGGT
GAACCGACCTGGGCATCCCTCCTTCTGTGAGGATTTTTCTAGCATTTGAGCAGTCCTGGCGTCC
TGTTGTGACTCCACCTAGCAAACTTCATGCTGCTTTCTGAATAGGTTGAACATCGGTCGGTTAC
AAACAGTCCAGAGACTGAAACTATGGCCACAGTGAGAGAGCAGAGAGGTAGAGAGGGAAGAAAT
AGAAGAGTTTCAAGTTTTTAGGACGGAAGCTCCAAGTACTGAAGTTCCTAACTAATCTAAAATG
CTGTGAGAGAGTGAGTCAGATCCTGTGAGGTGTAGAGTGTGGGAGGGGTACCAAATGGAGAGAC
TTGGCAGACTACCGCAGGAGCAGATGTGTTACGAGTGTATCTCATTGGAGGTGACAGAATCAAG
CGCCCAGCTGCATGTGTGCTTAGAGGTAAGATGTTTAGCAAAAACTGGAATTGCCAGGGAATTA
AACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACATCCCCCATCTGTGTT
GGAGATTGGCAAGGCTCAAAGACTGATAAGAACTGCGTAATTGTGGAGAGTTAGAATGTTGCAG
ATCAGAGACTGATTACGTTGGGCTATCATTAATCCCCTTGTGCTATTCATTGCCCATCCCTGTG
TTTGACCCAACATCTTTTTGACCATTGGGTAAAACCTTTGAAAGGTATCCTTAGCAGAGCCCCT
CACAAATCCAGAAGTTCAATACGTCATCAGATAGACCCCCAGCAGACTTTCCTGCTCCGCTGTG
TGGACAGTGCCAGTGTATTTGCTAAGCACATTGATTTATGACTCTTCTTTCTCTTGTGACTAAT
AAATGCCCATGGAACCTCTACAGGGAACGCTGTTACCAGGAGCTTTGAAGAATCCCATATTTTA
CTGAGAAATTGGGGCTCTTTTTCTGAGCTCTTCTATCTGGAGGCAGTTTTGTTTGAGAGAAAAC
AAGGCAGATCGCCTTCCGGTAGCCACAAATCACAGCATGGCGACCATATTTCCTGATTTCGCTA
ATTGGACTGAATGGGAGAAGTCGGACTGGAAAATTACATGACAAATAACTGTGATATTCAAATC
AACTAATGTGAGAAGGGAAAGGTGGGAGCTGAAACGCTAAAATGTTTGGGAACTTCACGGTGTT
ATGGTCAACCTGCCGCACGACCGTGTTCAAATCTGTCACCAACAGGTTCATTAAAAACCTGGCC
TGCTCCGGGATTTGTGCCAGCGTGGTCTGCGTGCCCTTCGACATCATCCTGAGCACCAGCCCTC
ACTGCTGCTGGTGGATCTACACGATGCTCTTCTGCAAGGTGCTTAAATTCCTACACAAGGTGTT
CTGCTCGGTGACTGTCCTCAGCTTTCCTGCCATTGCCCTGGACAGGTACTATTCAGTCCTCTAC
CCTCTGGAGAGAAAAATCTCTGACGCCAAGTCTCGGGAACTAGTGATGTACATCTGGGCCCATG
CAGTGGTGGCCAGCGTCCCTGTGTTTGCTGTGACCAATGTAGCTGACATCTATGCTACATCCAC
CTGCACGGAAGTCTGGAGCAACTCCTTGGGCCACCTGGTGTATGTCCTGATCTACAACGTCACC
ACGGTCATTGTGCCTGTGGCTGTGGTATTCCTCTTTCTTATCCTGATCCGGAGGGCCCTGAGTG
CCAGTCAGAAGAAGAAAGTCATCATCGCTGCACTGAGGACCCCACAGAACACCATCTCTATCCC
CTATGCATCCCAGCGGGAGGCAGAGCTACATGCCACCCTGCTCTCCATGGTGACAGTTTTCATC
CTCTGCAGCGTACCCTATGCCACCCTGGTTGTCTACCAGACTGTGCTCAATGTACCTAACACTT
CTGTGTTCTTGCTTCTCACTGCTATTTGGCTGCCCAAAGTCTCACTGTTGGCCAACCCTGTGCT
CTTCCTAACTGTGAACAGATCAGTACGCAAATGCTTGGTGGGGACCCTGGTGCAGTTGCACCAC
CGGTACAGTCGCCGCAATGTGGTTAGTACAGGGAGTGGGGTGGTTGAGCCTAGCCTTGAGCCCA
GCATGCGCTCTGGTAGCCAGCTCTTGGAGATGTTCCACATTGGACAGCAACAGATCTTTAAGCC
CTCGGAGGATGAGGAAGAGAGTGAGGCCAAGTATCTTGGCTCAACTGATTTCCAGGCCAAGGAG
GTACTCACCTCCTCCCCAGAGGGCGAGGAGTCACAGCTTGCACCCTCTGTGCCGCCTCCAGGCA
CAGTAGACTCTGTATCTCGGGTGTCCCCAGTAGCCCCCGTGGAACCTGGCATATTCCCTGATAA
GTATTCCCTGCAGTTTGGCTTTGGGCCTTTCGAGTTGCCCCCTCAGTGGCTCTCTGAGACTCGA
AATAGCAAGAAGAGGCTGCTTCCCCCACTGGGCAATACCCCAGAAGAGCTGATCCAGACAAAGG
TGCCCAGAGTGAGCAGGGTGGAGCGGAAGATGAGCAGAAACAATAAAGTGAGCATTTTTCCAAA
GGTAGACTCCTAGCGAGGACTATGAGTGCCTGAGAGTGTAAGGGAGCTTGTATATTCCTGTTCT
CCCTTCCCTCTGGCTGCCACTGTGGGGCGATAACTCCTTTACATGGCAAATGCTTCTGAATGAA
AGGGAAGTCTACAGAAAACCCAATGTCCTCTTTATTGAGGGAGTATATATCTATCTTAGTGATC
TGTGTCCTTCATCACATTCAGTGTAAGCTGGGCAGAATGGAACAGGTCTGAGGGCTCTCTGACA
CATTTTCTGGGAGATTCCTCCTTTTTTTGTGTGCAGCAAAGAACTCAAATGGAGCAGGCACTCC
AAGGAGGCCCAGGATAATTCTGGGCTTCAATGGCCACAGAGAAGAAGCTAATTTGTTTTTAAAA
TGTTTGTTTTGTTTTGTTTTGTTTTTTTTTTTTTGAGACTGGATTTCTCTATGTAGCCCCACCC
TACAGATTGGGCTGGCCTTGAACTCAGAGAGCCACCTGTCTCTGCCTTCTGAGTGCTGGGCTTA
AAGGTCTGTGCCCACATGCCCACTTAAGAAGCCTATTTGGGTAGCTAAATAAGAATAACAAATA
GGAAAATATCTGAGAAGACAGAGCCATGGTGTCGAATGGTTTTTGCTAGATTTCACAATCACCC
AACTCCTGGTTGCTAATACCCCTCGTCTGGATTTCTGGGTCATAAAGGGGGGGATGACTGGATT
TATCTTAGGATAGACAGGGCAGTGTCTGAGGGAGCCTTTTTGTCCTTGATTATCTCTCCACCCT
GTTGGTATCACCAAGGCCTCCAACAAATGTACCTGCTTCCACCAGTCAGCCATGCTGCCTGGAA
ACCACTGCCAACCATTCACTGTGTGTCCATTTTATCAGCAACAAGAAGGGAAGATTTGTGGTGG
CGAAGACAGGCTGAGAAATGCCCACCATGAATAACCTTTTTTCTCTCTCACGTGATTAAGAGCA
AAAGACTAGACTCAGTATAGGGGGGTATAGGCACAAAGTAAAACGTCCTAACTGGCAAATGTTT
GGAATTAAAAGGTGCTTAAGAAATGTAGGTGGCATGCACTGGGTCGTTTGGCACCATTAAGGTA
AAAATCCTTGATTAGCACAAGCGACTCTGCCCTAAGACTTATTAGTTTGACATACAGGACACGC
CCACCCGCCAGTCTCATTTTCAGTGTGTTCTGATTCTGGATCCCACAGAAGGTGAGCAGAGCAG
GAGAAATAATGATTGCAAATGCTAAAGCAATTCCCACCCTGATTTAGCACTCCATCCTCTACTT
CCAATGAAGTTCAGGTATGAGCCATGGTGGATGGGAGAATGTGCTCTCTCAGCAGCTCAGTGCC
CTGGCTCTCATGTGTGAGCCACTCTGGGACTGATGTACCAGACCTAATTCAAACCCAACTCTCC
CCTCATACATCAAGTTGGGAGCTCTGCTCTTCTTAGGGTGTTTTGTTCTTGTTTGTGGTCCTTG
GTGGAGCCAGTCGGGCACCTTGAATGGATAGGTATTCCTACGAGCAAACTTCTACATCTCAAAG
GCAGTGGTCCTAGCAGCACGTTTAGCCATGCTGGCCCATCGCCCCTAAGAGGAAGCTCAGCCCG
TGTATAGGGAGACTCCTTTTCTTTTCTTCTATTGTGTTATGTCTTGTGAACCCCAACATCTCCT
CCTTGGAGAGGGGGCGCCTTCCTTTCTGTGCACTGCCTCACAGACTTGTTTTCTCACGTCAGAG
ACAGGGTACTGTGCCCCTCTTGTGGCTCTGTGGCCCTCTGGGCCCTGTGTACCTGCCATCTGTA
GCTCTTTGTCCTGATGCTGTGTTAATGCTGTGGCCCTCCAAGCTCATCTTTCAAAGCCTTCTTA
ATTGTTACAGCTTTTACTAAGGGGAAAAATAATCCCTCAGAGAATCCTATGTACCAGAGAAGAA
CCTGTGAAATGTACGTGTGTTGCTGTCGTCCTGACCTGTATGTGTGACTTAATAAATTCTCAAC
AGCGGA

hide sequence

RefSeq Acc Id:

XM_017591437 ⟹ XP_017446926

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	110,042,973 - 110,079,027 (-)	NCBI

Sequence:

show sequence

CGAGTGTTCCAAGGTCTCTCATTCTCTGTGTAATGCCTGCCTGTGCGTCTCTGTATTTGTTCTC
ATTGCTGCGGGAGGCCTGAGCAAGGAGTCAGCATCAGAGTCTTTTTGGACCTTGTTGGTAAACT
TTGGCACTGCTTTCCCAGCAAGCCTCACTGACTTCTGTTTCTCCAGGGAACGCTGTTACCAGGA
GCTTTGAAGAATCCCATATTTTACTGAGAAATTGGGGCTCTTTTTCTGAGCTCTTCTATCTGGA
GGCAGTTTTGTTTGAGAGAAAACAAGGCAGATCGCCTTCCGGTAGCCACAAATCACAGCATGGC
GACCATATTTCCTGATTTCGCTAATTGGACTGAATGGGAGAAGTCGGACTGGAAAATTACATGA
CAAATAACTGTGATATTCAAATCAACTAATGTGAGAAGGGAAAGGTGGGAGCTGAAACGCTAAA
ATGTTTGGGAACTTCACGGTGTTATGGTCAACCTGCCGCACGACCGTGTTCAAATCTGTCACCA
ACAGGTTCATTAAAAACCTGGCCTGCTCCGGGATTTGTGCCAGCGTGGTCTGCGTGCCCTTCGA
CATCATCCTGAGCACCAGCCCTCACTGCTGCTGGTGGATCTACACGATGCTCTTCTGCAAGGTG
CTTAAATTCCTACACAAGGTGTTCTGCTCGGTGACTGTCCTCAGCTTTCCTGCCATTGCCCTGG
ACAGGTACTATTCAGTCCTCTACCCTCTGGAGAGAAAAATCTCTGACGCCAAGTCTCGGGAACT
AGTGATGTACATCTGGGCCCATGCAGTGGTGGCCAGCGTCCCTGTGTTTGCTGTGACCAATGTA
GCTGACATCTATGCTACATCCACCTGCACGGAAGTCTGGAGCAACTCCTTGGGCCACCTGGTGT
ATGTCCTGATCTACAACGTCACCACGGTCATTGTGCCTGTGGCTGTGGTATTCCTCTTTCTTAT
CCTGATCCGGAGGGCCCTGAGTGCCAGTCAGAAGAAGAAAGTCATCATCGCTGCACTGAGGACC
CCACAGAACACCATCTCTATCCCCTATGCATCCCAGCGGGAGGCAGAGCTACATGCCACCCTGC
TCTCCATGGTGACAGTTTTCATCCTCTGCAGCGTACCCTATGCCACCCTGGTTGTCTACCAGAC
TGTGCTCAATGTACCTAACACTTCTGTGTTCTTGCTTCTCACTGCTATTTGGCTGCCCAAAGTC
TCACTGTTGGCCAACCCTGTGCTCTTCCTAACTGTGAACAGATCAGTACGCAAATGCTTGGTGG
GGACCCTGGTGCAGTTGCACCACCGGTACAGTCGCCGCAATGTGGTTAGTACAGGGAGTGGGGT
GGTTGAGCCTAGCCTTGAGCCCAGCATGCGCTCTGGTAGCCAGCTCTTGGAGATGTTCCACATT
GGACAGCAACAGATCTTTAAGCCCTCGGAGGATGAGGAAGAGAGTGAGGCCAAGTATCTTGGCT
CAACTGATTTCCAGGCCAAGGAGGTACTCACCTCCTCCCCAGAGGGCGAGGAGTCACAGCTTGC
ACCCTCTGTGCCGCCTCCAGGCACAGTAGACTCTGTATCTCGGGTGTCCCCAGTAGCCCCCGTG
GAACCTGGCATATTCCCTGATAAGTATTCCCTGCAGTTTGGCTTTGGGCCTTTCGAGTTGCCCC
CTCAGTGGCTCTCTGAGACTCGAAATAGCAAGAAGAGGCTGCTTCCCCCACTGGGCAATACCCC
AGAAGAGCTGATCCAGACAAAGGTGCCCAGAGTGAGCAGGGTGGAGCGGAAGATGAGCAGAAAC
AATAAAGTGAGCATTTTTCCAAAGGTAGACTCCTAGCGAGGACTATGAGTGCCTGAGAGTGTAA
GGGAGCTTGTATATTCCTGTTCTCCCTTCCCTCTGGCTGCCACTGTGGGGCGATAACTCCTTTA
CATGGCAAATGCTTCTGAATGAAAGGGAAGTCTACAGAAAACCCAATGTCCTCTTTATTGAGGG
AGTATATATCTATCTTAGTGATCTGTGTCCTTCATCACATTCAGTGTAAGCTGGGCAGAATGGA
ACAGGTCTGAGGGCTCTCTGACACATTTTCTGGGAGATTCCTCCTTTTTTTGTGTGCAGCAAAG
AACTCAAATGGAGCAGGCACTCCAAGGAGGCCCAGGATAATTCTGGGCTTCAATGGCCACAGAG
AAGAAGCTAATTTGTTTTTAAAATGTTTGTTTTGTTTTGTTTTGTTTTTTTTTTTTTGAGACTG
GATTTCTCTATGTAGCCCCACCCTACAGATTGGGCTGGCCTTGAACTCAGAGAGCCACCTGTCT
CTGCCTTCTGAGTGCTGGGCTTAAAGGTCTGTGCCCACATGCCCACTTAAGAAGCCTATTTGGG
TAGCTAAATAAGAATAACAAATAGGAAAATATCTGAGAAGACAGAGCCATGGTGTCGAATGGTT
TTTGCTAGATTTCACAATCACCCAACTCCTGGTTGCTAATACCCCTCGTCTGGATTTCTGGGTC
ATAAAGGGGGGGATGACTGGATTTATCTTAGGATAGACAGGGCAGTGTCTGAGGGAGCCTTTTT
GTCCTTGATTATCTCTCCACCCTGTTGGTATCACCAAGGCCTCCAACAAATGTACCTGCTTCCA
CCAGTCAGCCATGCTGCCTGGAAACCACTGCCAACCATTCACTGTGTGTCCATTTTATCAGCAA
CAAGAAGGGAAGATTTGTGGTGGCGAAGACAGGCTGAGAAATGCCCACCATGAATAACCTTTTT
TCTCTCTCACGTGATTAAGAGCAAAAGACTAGACTCAGTATAGGGGGGTATAGGCACAAAGTAA
AACGTCCTAACTGGCAAATGTTTGGAATTAAAAGGTGCTTAAGAAATGTAGGTGGCATGCACTG
GGTCGTTTGGCACCATTAAGGTAAAAATCCTTGATTAGCACAAGCGACTCTGCCCTAAGACTTA
TTAGTTTGACATACAGGACACGCCCACCCGCCAGTCTCATTTTCAGTGTGTTCTGATTCTGGAT
CCCACAGAAGGTGAGCAGAGCAGGAGAAATAATGATTGCAAATGCTAAAGCAATTCCCACCCTG
ATTTAGCACTCCATCCTCTACTTCCAATGAAGTTCAGGTATGAGCCATGGTGGATGGGAGAATG
TGCTCTCTCAGCAGCTCAGTGCCCTGGCTCTCATGTGTGAGCCACTCTGGGACTGATGTACCAG
ACCTAATTCAAACCCAACTCTCCCCTCATACATCAAGTTGGGAGCTCTGCTCTTCTTAGGGTGT
TTTGTTCTTGTTTGTGGTCCTTGGTGGAGCCAGTCGGGCACCTTGAATGGATAGGTATTCCTAC
GAGCAAACTTCTACATCTCAAAGGCAGTGGTCCTAGCAGCACGTTTAGCCATGCTGGCCCATCG
CCCCTAAGAGGAAGCTCAGCCCGTGTATAGGGAGACTCCTTTTCTTTTCTTCTATTGTGTTATG
TCTTGTGAACCCCAACATCTCCTCCTTGGAGAGGGGGCGCCTTCCTTTCTGTGCACTGCCTCAC
AGACTTGTTTTCTCACGTCAGAGACAGGGTACTGTGCCCCTCTTGTGGCTCTGTGGCCCTCTGG
GCCCTGTGTACCTGCCATCTGTAGCTCTTTGTCCTGATGCTGTGTTAATGCTGTGGCCCTCCAA
GCTCATCTTTCAAAGCCTTCTTAATTGTTACAGCTTTTACTAAGGGGAAAAATAATCCCTCAGA
GAATCCTATGTACCAGAGAAGAACCTGTGAAATGTACGTGTGTTGCTGTCGTCCTGACCTGTAT
GTGTGACTTAATAAATTCTCAACAGCGGA

hide sequence

RefSeq Acc Id:

XM_039104127 ⟹ XP_038960055

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	105,236,794 - 105,279,827 (-)	NCBI

RefSeq Acc Id:

XM_039104128 ⟹ XP_038960056

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	105,236,794 - 105,257,360 (-)	NCBI

RefSeq Acc Id:

XM_039104129 ⟹ XP_038960057

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	105,236,794 - 105,337,660 (-)	NCBI

RefSeq Acc Id:

XM_039104130 ⟹ XP_038960058

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	105,236,794 - 105,275,521 (-)	NCBI

RefSeq Acc Id:

XM_039104131 ⟹ XP_038960059

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	105,236,794 - 105,272,152 (-)	NCBI

RefSeq Acc Id:

XM_039104132 ⟹ XP_038960060

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	105,236,794 - 105,336,985 (-)	NCBI

RefSeq Acc Id:

XM_039104133 ⟹ XP_038960061

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	105,236,794 - 105,262,834 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001257915	(Get FASTA)	NCBI Sequence Viewer
	XP_017446923	(Get FASTA)	NCBI Sequence Viewer
	XP_038960055	(Get FASTA)	NCBI Sequence Viewer
	XP_038960056	(Get FASTA)	NCBI Sequence Viewer
	XP_038960057	(Get FASTA)	NCBI Sequence Viewer
	XP_038960058	(Get FASTA)	NCBI Sequence Viewer
	XP_038960059	(Get FASTA)	NCBI Sequence Viewer
	XP_038960060	(Get FASTA)	NCBI Sequence Viewer
	XP_038960061	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAA07482	(Get FASTA)	NCBI Sequence Viewer
	EDL79855	(Get FASTA)	NCBI Sequence Viewer
	Q64017	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001257915 ⟸ NM_001270986

- UniProtKB:

Q64017 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MGHNGSWVSPNTSHPRNTSGAQAGANSSAFGELSEAQLYRQFTTTVQVVIFIGSLLGNFTVLWS
TCRTTVFKSVTNRFIKNLACSGICASVVCVPFDIILSTSPHCCWWIYTMLFCKVLKFLHKVFCS
VTVLSFPAIALDRYYSVLYPLERKISDAKSRELVMYIWAHAVVASVPVFAVTNVADIYATSTCT
EVWSNSLGHLVYVLIYNVTTVIVPVAVVFLFLILIRRALSASQKKKVIIAALRTPQNTISIPYA
SQREAELHATLLSMVTVFILCSVPYATLVVYQTVLNVPNTSVFLLLTAIWLPKVSLLANPVLFL
TVNRSVRKCLVGTLVQLHHRYSRRNVVSTGSGVVEPSLEPSMRSGSQLLEMFHIGQQQIFKPSE
DEEESEAKYLGSTDFQAKEVLTSSPEGEESQLAPSVPPPGTVDSVSRVSPVAPVEPGIFPDKYS
LQFGFGPFELPPQWLSETRNSKKRLLPPLGNTPEELIQTKVPRVSRVERKMSRNNKVSIFPKVD
S

hide sequence

RefSeq Acc Id:

XP_017446923 ⟸ XM_017591434

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDDSVPSGVTLPSGGAKLLAVNELVLYVTFLHGGGARQSCPSGNFTVLWSTCRTTVFKSVTNRF
IKNLACSGICASVVCVPFDIILSTSPHCCWWIYTMLFCKVLKFLHKVFCSVTVLSFPAIALDRY
YSVLYPLERKISDAKSRELVMYIWAHAVVASVPVFAVTNVADIYATSTCTEVWSNSLGHLVYVL
IYNVTTVIVPVAVVFLFLILIRRALSASQKKKVIIAALRTPQNTISIPYASQREAELHATLLSM
VTVFILCSVPYATLVVYQTVLNVPNTSVFLLLTAIWLPKVSLLANPVLFLTVNRSVRKCLVGTL
VQLHHRYSRRNVVSTGSGVVEPSLEPSMRSGSQLLEMFHIGQQQIFKPSEDEEESEAKYLGSTD
FQAKEVLTSSPEGEESQLAPSVPPPGTVDSVSRVSPVAPVEPGIFPDKYSLQFGFGPFELPPQW
LSETRNSKKRLLPPLGNTPEELIQTKVPRVSRVERKMSRNNKVSIFPKVDS

hide sequence

RefSeq Acc Id:

XP_017446925 ⟸ XM_017591436

- Peptide Label:

isoform X2

- Sequence:

show sequence

MFGNFTVLWSTCRTTVFKSVTNRFIKNLACSGICASVVCVPFDIILSTSPHCCWWIYTMLFCKV
LKFLHKVFCSVTVLSFPAIALDRYYSVLYPLERKISDAKSRELVMYIWAHAVVASVPVFAVTNV
ADIYATSTCTEVWSNSLGHLVYVLIYNVTTVIVPVAVVFLFLILIRRALSASQKKKVIIAALRT
PQNTISIPYASQREAELHATLLSMVTVFILCSVPYATLVVYQTVLNVPNTSVFLLLTAIWLPKV
SLLANPVLFLTVNRSVRKCLVGTLVQLHHRYSRRNVVSTGSGVVEPSLEPSMRSGSQLLEMFHI
GQQQIFKPSEDEEESEAKYLGSTDFQAKEVLTSSPEGEESQLAPSVPPPGTVDSVSRVSPVAPV
EPGIFPDKYSLQFGFGPFELPPQWLSETRNSKKRLLPPLGNTPEELIQTKVPRVSRVERKMSRN
NKVSIFPKVDS

hide sequence

RefSeq Acc Id:

XP_017446926 ⟸ XM_017591437

- Peptide Label:

isoform X2

- Sequence:

show sequence

MFGNFTVLWSTCRTTVFKSVTNRFIKNLACSGICASVVCVPFDIILSTSPHCCWWIYTMLFCKV
LKFLHKVFCSVTVLSFPAIALDRYYSVLYPLERKISDAKSRELVMYIWAHAVVASVPVFAVTNV
ADIYATSTCTEVWSNSLGHLVYVLIYNVTTVIVPVAVVFLFLILIRRALSASQKKKVIIAALRT
PQNTISIPYASQREAELHATLLSMVTVFILCSVPYATLVVYQTVLNVPNTSVFLLLTAIWLPKV
SLLANPVLFLTVNRSVRKCLVGTLVQLHHRYSRRNVVSTGSGVVEPSLEPSMRSGSQLLEMFHI
GQQQIFKPSEDEEESEAKYLGSTDFQAKEVLTSSPEGEESQLAPSVPPPGTVDSVSRVSPVAPV
EPGIFPDKYSLQFGFGPFELPPQWLSETRNSKKRLLPPLGNTPEELIQTKVPRVSRVERKMSRN
NKVSIFPKVDS

hide sequence

RefSeq Acc Id:

XP_017446924 ⟸ XM_017591435

- Peptide Label:

isoform X2

- Sequence:

show sequence

MFGNFTVLWSTCRTTVFKSVTNRFIKNLACSGICASVVCVPFDIILSTSPHCCWWIYTMLFCKV
LKFLHKVFCSVTVLSFPAIALDRYYSVLYPLERKISDAKSRELVMYIWAHAVVASVPVFAVTNV
ADIYATSTCTEVWSNSLGHLVYVLIYNVTTVIVPVAVVFLFLILIRRALSASQKKKVIIAALRT
PQNTISIPYASQREAELHATLLSMVTVFILCSVPYATLVVYQTVLNVPNTSVFLLLTAIWLPKV
SLLANPVLFLTVNRSVRKCLVGTLVQLHHRYSRRNVVSTGSGVVEPSLEPSMRSGSQLLEMFHI
GQQQIFKPSEDEEESEAKYLGSTDFQAKEVLTSSPEGEESQLAPSVPPPGTVDSVSRVSPVAPV
EPGIFPDKYSLQFGFGPFELPPQWLSETRNSKKRLLPPLGNTPEELIQTKVPRVSRVERKMSRN
NKVSIFPKVDS

hide sequence

RefSeq Acc Id:

ENSRNOP00000007882 ⟸ ENSRNOT00000007882

RefSeq Acc Id:	XP_038960057 ⟸ XM_039104129
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038960060 ⟸ XM_039104132
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038960055 ⟸ XM_039104127
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038960058 ⟸ XM_039104130
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038960059 ⟸ XM_039104131
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038960061 ⟸ XM_039104133
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038960056 ⟸ XM_039104128
- Peptide Label:	isoform X3

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692307

Promoter ID:

EPDNEW_R2831

Type:

initiation region

Name:

Gpr176_1

Description:

G protein-coupled receptor 176

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	110,140,713 - 110,140,773	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621718	AgrOrtholog
Ensembl Genes	ENSRNOG00000005971	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000007882	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000007882	ENTREZGENE, UniProtKB/Swiss-Prot
InterPro	GPCR_176_Rhodpsn_7TM	UniProtKB/Swiss-Prot
	GPCR_Rhodpsn	UniProtKB/Swiss-Prot
	GPCR_Rhodpsn_7TM	UniProtKB/Swiss-Prot
KEGG Report	rno:117257	UniProtKB/Swiss-Prot
NCBI Gene	117257	ENTREZGENE
Pfam	7tm_1	UniProtKB/Swiss-Prot
PhenoGen	Gpr176	PhenoGen
PRINTS	GPCRRHODOPSN	UniProtKB/Swiss-Prot
PROSITE	G_PROTEIN_RECEP_F1_2	UniProtKB/Swiss-Prot
UniProt	GP176_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	Q63231	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Gpr176	G protein-coupled receptor 176	Gm1012	gene model 1012, (NCBI)	Symbol and Name updated	1299863	APPROVED
2004-09-10	Gm1012	gene model 1012, (NCBI)	Gpr	putative G protein coupled receptor	Symbol and Name updated	1299863	APPROVED
2002-08-07	Gpr	putative G protein coupled receptor			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains four putative glycosylation sites in the N-terminal part, seven transmembrane domains, and a large cytosolic domain in the C-terminal part	632864

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar