Ramp3 (receptor (calcitonin) activity modifying protein 3) - Rat Genome Database

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Gene: Ramp3 (receptor (calcitonin) activity modifying protein 3) Mus musculus
Analyze
Symbol: Ramp3
Name: receptor (calcitonin) activity modifying protein 3
RGD ID: 62165
MGI Page MGI
Description: Enables coreceptor activity. Involved in G protein-coupled receptor signaling pathway involved in heart process and cellular response to estradiol stimulus. Acts upstream of or within G protein-coupled receptor signaling pathway. Located in plasma membrane. Is expressed in several structures, including alimentary system; central nervous system; heart; liver; and lung. Orthologous to human RAMP3 (receptor activity modifying protein 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI850306; receptor activity-modifying protein 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,608,507 - 6,627,478 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,608,521 - 6,627,475 (+)EnsemblGRCm39 Ensembl
GRCm38116,658,506 - 6,677,478 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,658,521 - 6,677,475 (+)EnsemblGRCm38mm10GRCm38
MGSCv37116,558,536 - 6,577,478 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36116,558,536 - 6,577,478 (+)NCBIMGSCv36mm8
Celera1118,979,836 - 18,982,575 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map114.61NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (EXP,ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2-palmitoylglycerol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aldehydo-D-glucose  (EXP)
amitrole  (ISO)
ammonium chloride  (ISO)
amphotericin B  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
Benzo[k]fluoranthene  (EXP)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (EXP)
calciol  (ISO)
carbon nanotube  (EXP)
chloroprene  (EXP)
chrysene  (EXP)
D-glucose  (EXP)
dextran sulfate  (EXP)
dibenz[a,h]anthracene  (EXP)
dibutyl phthalate  (ISO)
dioxygen  (EXP)
ethanol  (EXP)
furan  (ISO)
glucose  (EXP)
hydralazine  (ISO)
hydrochlorothiazide  (ISO)
hydrogen cyanide  (EXP)
indole-3-methanol  (ISO)
inulin  (EXP)
isoprenaline  (ISO)
methimazole  (ISO)
methoxychlor  (ISO)
morphine  (EXP)
nicotine  (EXP,ISO)
nitric oxide  (ISO)
oxaliplatin  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenylephrine  (ISO)
pirinixic acid  (EXP)
potassium cyanide  (EXP)
progesterone  (EXP)
sulfadimethoxine  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
tetraphene  (EXP)
titanium dioxide  (EXP)
topotecan  (ISO)
trichloroethene  (ISO)
troglitazone  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Adrenomedullin production is increased in colorectal adenocarcinomas; its relation to matrix metalloproteinase-9. Hikosaka T, etal., Peptides. 2011 Sep;32(9):1825-31. doi: 10.1016/j.peptides.2011.07.012. Epub 2011 Aug 3.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10777702   PMID:10828067   PMID:10854696   PMID:11042159   PMID:11060459   PMID:11076861   PMID:11854283   PMID:12477932   PMID:14610273   PMID:15489334  
PMID:16141072   PMID:16141073   PMID:16284245   PMID:16602821   PMID:17470425   PMID:18097473   PMID:18255060   PMID:18287559   PMID:18981183   PMID:21267068   PMID:21873635   PMID:22100352  
PMID:22563471   PMID:23674134   PMID:25264174   PMID:27668656   PMID:27940069   PMID:29467172   PMID:30385288   PMID:30728831   PMID:31754214   PMID:31881259   PMID:33385343   PMID:33545715  
PMID:33905587   PMID:35628521   PMID:36971701   PMID:37528140   PMID:38012983  


Genomics

Comparative Map Data
Ramp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,608,507 - 6,627,478 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,608,521 - 6,627,475 (+)EnsemblGRCm39 Ensembl
GRCm38116,658,506 - 6,677,478 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,658,521 - 6,677,475 (+)EnsemblGRCm38mm10GRCm38
MGSCv37116,558,536 - 6,577,478 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36116,558,536 - 6,577,478 (+)NCBIMGSCv36mm8
Celera1118,979,836 - 18,982,575 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map114.61NCBI
RAMP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38745,157,791 - 45,184,250 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl745,157,791 - 45,186,302 (+)EnsemblGRCh38hg38GRCh38
GRCh37745,197,390 - 45,223,849 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36745,163,892 - 45,190,374 (+)NCBINCBI36Build 36hg18NCBI36
Build 34744,970,638 - 44,997,087NCBI
Celera745,296,201 - 45,322,683 (+)NCBICelera
Cytogenetic Map7p13NCBI
HuRef745,081,154 - 45,107,455 (+)NCBIHuRef
CHM1_1745,201,027 - 45,227,508 (+)NCBICHM1_1
T2T-CHM13v2.0745,318,568 - 45,345,028 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2745,236,530 - 45,263,012 (+)NCBI
Ramp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81485,741,314 - 85,758,813 (+)NCBIGRCr8
mRatBN7.21481,527,404 - 81,544,905 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1481,527,385 - 81,544,902 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1485,928,688 - 85,946,185 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01487,168,498 - 87,186,001 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01483,618,093 - 83,635,590 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01486,922,223 - 86,939,722 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1486,922,223 - 86,939,719 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01480,555,482 - 80,572,981 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41487,417,290 - 87,434,789 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11487,436,434 - 87,453,933 (+)NCBI
Celera1480,409,008 - 80,426,508 (+)NCBICelera
Cytogenetic Map14q21NCBI
Ramp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554567,159,845 - 7,168,792 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554567,159,845 - 7,168,718 (-)NCBIChiLan1.0ChiLan1.0
RAMP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2650,070,783 - 50,097,555 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1798,395,524 - 98,422,292 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0745,871,687 - 45,898,159 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1745,937,607 - 45,964,088 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl745,937,607 - 45,966,041 (+)Ensemblpanpan1.1panPan2
RAMP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha162,664,601 - 2,679,402 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01614,181,470 - 14,196,274 (-)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.01613,814,391 - 13,829,193 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01613,793,847 - 13,808,648 (-)NCBIUU_Cfam_GSD_1.0
Ramp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118100,765,846 - 100,789,731 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647819,977,539 - 20,004,838 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647819,977,618 - 20,001,366 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAMP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1850,319,797 - 50,366,739 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11850,319,795 - 50,366,757 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21855,155,083 - 55,174,055 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAMP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12113,494,981 - 13,521,141 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660629,009,778 - 9,035,756 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ramp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247407,241,296 - 7,249,410 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247407,240,841 - 7,249,313 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ramp3
617 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:393
Count of miRNA genes:323
Interacting mature miRNAs:355
Transcripts:ENSMUST00000045374, ENSMUST00000139540
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse

Markers in Region
AI850306  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38116,677,250 - 6,677,399UniSTSGRCm38
MGSCv37116,577,253 - 6,577,402UniSTSGRCm37
Celera1118,979,912 - 18,980,061UniSTS
Cytogenetic Map11A1UniSTS
cM Map112.1UniSTS
Whitehead/MRC_RH1138.46UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000045374   ⟹   ENSMUSP00000047518
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,608,521 - 6,627,475 (+)Ensembl
GRCm38.p6 Ensembl116,658,521 - 6,677,475 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139540
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,608,565 - 6,627,472 (+)Ensembl
GRCm38.p6 Ensembl116,658,565 - 6,677,472 (+)Ensembl
RefSeq Acc Id: NM_019511   ⟹   NP_062384
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39116,608,533 - 6,627,475 (+)NCBI
GRCm38116,658,533 - 6,677,475 (+)NCBI
MGSCv37116,558,536 - 6,577,478 (+)RGD
Celera1118,979,836 - 18,982,575 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514761   ⟹   XP_006514824
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39116,608,507 - 6,627,478 (+)NCBI
GRCm38116,658,506 - 6,677,478 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_062384 (Get FASTA)   NCBI Sequence Viewer  
  XP_006514824 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD35020 (Get FASTA)   NCBI Sequence Viewer  
  AAF21039 (Get FASTA)   NCBI Sequence Viewer  
  AAH24765 (Get FASTA)   NCBI Sequence Viewer  
  CAB59513 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000047518
  ENSMUSP00000047518.8
GenBank Protein Q9WUP1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_062384   ⟸   NM_019511
- Peptide Label: precursor
- UniProtKB: Q5SWP4 (UniProtKB/Swiss-Prot),   Q9WUP1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006514824   ⟸   XM_006514761
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000047518   ⟸   ENSMUST00000045374

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WUP1-F1-model_v2 AlphaFold Q9WUP1 1-147 view protein structure

Promoters
RGD ID:8673926
Promoter ID:EPDNEW_M14993
Type:initiation region
Name:Ramp3_1
Description:Mus musculus receptor activity modifying protein 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38116,658,525 - 6,658,585EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1860292 AgrOrtholog
Ensembl Genes ENSMUSG00000041046 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000045374 ENTREZGENE
  ENSMUST00000045374.8 UniProtKB/Swiss-Prot
  ENSMUST00000139540 ENTREZGENE
Gene3D-CATH 1.10.150.510 UniProtKB/Swiss-Prot
InterPro RAMP UniProtKB/Swiss-Prot
  RAMP_sf UniProtKB/Swiss-Prot
KEGG Report mmu:56089 UniProtKB/Swiss-Prot
MGD MGI:1860292 ENTREZGENE
NCBI Gene 56089 ENTREZGENE
PANTHER PTHR14076 UniProtKB/Swiss-Prot
  RECEPTOR ACTIVITY-MODIFYING PROTEIN 3 UniProtKB/Swiss-Prot
Pfam RAMP UniProtKB/Swiss-Prot
PhenoGen Ramp3 PhenoGen
UniProt Q5SWP4 ENTREZGENE
  Q9WUP1 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q5SWP4 UniProtKB/Swiss-Prot