Gabra1 (gamma-aminobutyric acid type A receptor subunit alpha 1) - Rat Genome Database

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Gene: Gabra1 (gamma-aminobutyric acid type A receptor subunit alpha 1) Mus musculus
Analyze
Symbol: Gabra1
Name: gamma-aminobutyric acid type A receptor subunit alpha 1 (Ensembl:gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1)
RGD ID: 62147
MGI Page MGI
Description: Enables transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Contributes to GABA-gated chloride ion channel activity. Involved in inhibitory synapse assembly and regulation of postsynaptic membrane potential. Located in plasma membrane. Is active in GABA-ergic synapse. Is expressed in central nervous system; eye; palatal shelf; and submandibular gland primordium. Used to study idiopathic generalized epilepsy. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 19 and idiopathic generalized epilepsy 13. Orthologous to human GABRA1 (gamma-aminobutyric acid type A receptor subunit alpha1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GABA(A) receptor subunit alpha-1; GABAA alpha 1; GABAA-alpha1; GABAAR alpha1; GABAAR-alpha1; Gabr; Gabra-1; gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1; gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 1; gamma-aminobutyric acid receptor subunit alpha-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391142,021,766 - 42,073,893 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1142,021,766 - 42,073,757 (-)EnsemblGRCm39 Ensembl
GRCm381142,130,939 - 42,183,066 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1142,130,939 - 42,182,930 (-)EnsemblGRCm38mm10GRCm38
MGSCv371141,944,982 - 41,996,432 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361141,974,903 - 42,026,353 (-)NCBIMGSCv36mm8
Celera1145,953,528 - 46,009,149 (-)NCBICelera
Cytogenetic Map11A5NCBI
cM Map1124.97NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-beta-thujone  (ISO)
(+)-isoborneol  (ISO)
(+)-pilocarpine  (ISO)
(R)-camphor  (ISO)
1,1,1-trichloroethane  (ISO)
1-(2-methoxyphenyl)piperazine  (ISO)
1-(3-(trifluoromethyl)phenyl)piperazine  (ISO)
1-(3-chlorophenyl)piperazine  (ISO)
1-benzylpiperazine  (ISO)
1-bromopropane  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-tetrachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,6-Dimethylphenol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-Methylenedioxyamphetamine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3alpha-hydroxy-5beta-pregnan-20-one  (ISO)
4-ethyl-4-methylpiperidine-2,6-dione  (ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
alpha-hexachlorocyclohexane  (ISO)
Alphaxolone  (ISO)
amitriptyline  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
anthracenes  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
Bacoside a  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bicuculline  (ISO)
bisphenol A  (EXP,ISO)
bromoform  (ISO)
butan-1-ol  (EXP,ISO)
camphor  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carisoprodol  (ISO)
carvone  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
clozapine  (EXP)
cocaine  (ISO)
colforsin daropate hydrochloride  (ISO)
Cuprizon  (ISO)
curcumin  (ISO)
cypermethrin  (ISO)
delta-hexachlorocyclohexane  (ISO)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (ISO)
diazepam  (EXP,ISO)
dieldrin  (ISO)
endosulfan  (ISO)
enflurane  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP,ISO)
etomidate  (ISO)
famotidine  (ISO)
felbamate  (ISO)
fipronil  (ISO)
flumazenil  (ISO)
flunitrazepam  (ISO)
flurazepam  (EXP)
flurotyl  (ISO)
gamma-aminobutyric acid  (EXP,ISO)
gamma-hexachlorocyclohexane  (ISO)
gentamycin  (ISO)
haloperidol  (EXP)
hexachlorophene  (EXP)
iron atom  (ISO)
iron(0)  (ISO)
isoflurane  (EXP)
lanthanum atom  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (EXP)
Lorazepam  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
menthone  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methyl tert-butyl ether  (ISO)
methylmercury chloride  (EXP,ISO)
Methylone  (ISO)
morphine  (ISO)
muscimol  (EXP,ISO)
Niflumic acid  (ISO)
o-cresol  (ISO)
oxcarbazepine  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
pentetrazol  (ISO)
pentobarbital  (EXP,ISO)
phencyclidine  (EXP)
picrotoxin  (ISO)
picrotoxinin  (ISO)
poly(I:C)  (ISO)
pregnenolone sulfate  (ISO)
propofol  (ISO)
tert-Butylbicyclophosphorothionate  (ISO)
testosterone  (ISO)
Testosterone propionate  (EXP)
theophylline  (EXP)
thimerosal  (ISO)
thymol  (ISO)
thymol sulfate(1-)  (ISO)
toluene  (ISO)
topiramate  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
wogonin  (EXP)
zaleplon  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zolpidem  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Tracking the expression of excitatory and inhibitory neurotransmission-related proteins and neuroplasticity markers after noise induced hearing loss. Browne CJ, etal., PLoS One. 2012;7(3):e33272. doi: 10.1371/journal.pone.0033272. Epub 2012 Mar 12.
2. Expression of gamma-aminobutyric acid A receptor subunits alpha1, beta1, gamma2 mRNA in rats with hepatic encephalopathy. Li XQ, etal., World J Gastroenterol. 2005 Jun 7;11(21):3319-22.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. Online Mendelian Inheritance in Man, OMIM (TM). Online Mendelian Inheritance in Man, OMIM (TM).
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. A single histidine in GABAA receptors is essential for benzodiazepine agonist binding. Wieland HA, etal., J Biol Chem 1992 Jan 25;267(3):1426-9.
Additional References at PubMed
PMID:1325237   PMID:1356407   PMID:1358285   PMID:1359369   PMID:1533386   PMID:1647739   PMID:1664786   PMID:1848528   PMID:2561974   PMID:7558022   PMID:7590745   PMID:7643102  
PMID:7713496   PMID:7713516   PMID:7767000   PMID:7829087   PMID:7956352   PMID:8570653   PMID:8595891   PMID:8613747   PMID:8665663   PMID:8889548   PMID:9023306   PMID:9069281  
PMID:9070927   PMID:9105679   PMID:9457670   PMID:9924185   PMID:10087302   PMID:10331952   PMID:10349636   PMID:10501176   PMID:10548105   PMID:10816315   PMID:10882481   PMID:11042159  
PMID:11076861   PMID:11172053   PMID:11217851   PMID:11312285   PMID:11331371   PMID:11875023   PMID:11902122   PMID:12106288   PMID:12183661   PMID:12367614   PMID:12433958   PMID:12466441  
PMID:12477932   PMID:12490572   PMID:12574407   PMID:12574411   PMID:12588844   PMID:12606632   PMID:12623217   PMID:12707262   PMID:12730335   PMID:14622913   PMID:14715953   PMID:14744041  
PMID:15017002   PMID:15085086   PMID:15158081   PMID:15254090   PMID:15304513   PMID:15579148   PMID:15610161   PMID:15660664   PMID:15758057   PMID:15765150   PMID:15833735   PMID:16101898  
PMID:16141072   PMID:16141073   PMID:16176386   PMID:16253225   PMID:16266699   PMID:16277610   PMID:16294320   PMID:16436183   PMID:16485284   PMID:16490182   PMID:16554475   PMID:16602821  
PMID:16627470   PMID:16701208   PMID:16723524   PMID:16754670   PMID:16807363   PMID:16832820   PMID:16835366   PMID:16927170   PMID:16957088   PMID:16987237   PMID:17021187   PMID:17114649  
PMID:17351635   PMID:17428916   PMID:17442679   PMID:17552997   PMID:17941889   PMID:17965197   PMID:18063661   PMID:18079158   PMID:18080868   PMID:18085262   PMID:18185516   PMID:18287559  
PMID:18625330   PMID:18723687   PMID:18973555   PMID:18985723   PMID:19144833   PMID:19302153   PMID:19457072   PMID:19723784   PMID:19759851   PMID:19876409   PMID:20412381   PMID:20457185  
PMID:20505082   PMID:20547167   PMID:20711348   PMID:20712007   PMID:20861386   PMID:20940303   PMID:21056629   PMID:21073549   PMID:21195749   PMID:21267068   PMID:21343285   PMID:21526163  
PMID:21621520   PMID:21677750   PMID:21732488   PMID:21789198   PMID:21789893   PMID:21873635   PMID:21994384   PMID:22145864   PMID:22569571   PMID:22640814   PMID:22673621   PMID:22723691  
PMID:22764252   PMID:22768092   PMID:22812724   PMID:22912786   PMID:22937132   PMID:22992651   PMID:23109109   PMID:23457547   PMID:23565710   PMID:23744069   PMID:24027285   PMID:24055402  
PMID:24096136   PMID:24417662   PMID:24753587   PMID:24758222   PMID:24952961   PMID:24973971   PMID:25080596   PMID:25348603   PMID:25352779   PMID:25447232   PMID:25579817   PMID:25708312  
PMID:25865415   PMID:25934101   PMID:26054439   PMID:26096050   PMID:26443267   PMID:26606997   PMID:26745185   PMID:26945068   PMID:27061582   PMID:27129275   PMID:27155990   PMID:27981574  
PMID:28009294   PMID:28054918   PMID:28643105   PMID:28676743   PMID:28821923   PMID:28864826   PMID:28978485   PMID:29109059   PMID:29184199   PMID:29184203   PMID:29742426   PMID:29950725  
PMID:30104684   PMID:30562941   PMID:30602789   PMID:31138677   PMID:31315046   PMID:31910261   PMID:32181477   PMID:32259485   PMID:32602839   PMID:32902350   PMID:33096025   PMID:33745922  
PMID:34433078   PMID:34526505   PMID:34885687   PMID:35228700   PMID:35245678   PMID:36030824   PMID:36417873   PMID:36604605   PMID:36733270   PMID:36843585   PMID:37298532   PMID:37703949  
PMID:37715891   PMID:38187761  


Genomics

Comparative Map Data
Gabra1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391142,021,766 - 42,073,893 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1142,021,766 - 42,073,757 (-)EnsemblGRCm39 Ensembl
GRCm381142,130,939 - 42,183,066 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1142,130,939 - 42,182,930 (-)EnsemblGRCm38mm10GRCm38
MGSCv371141,944,982 - 41,996,432 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361141,974,903 - 42,026,353 (-)NCBIMGSCv36mm8
Celera1145,953,528 - 46,009,149 (-)NCBICelera
Cytogenetic Map11A5NCBI
cM Map1124.97NCBI
GABRA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385161,847,191 - 161,899,971 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5161,847,063 - 161,899,981 (+)EnsemblGRCh38hg38GRCh38
GRCh375161,274,197 - 161,326,977 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365161,206,983 - 161,258,992 (+)NCBINCBI36Build 36hg18NCBI36
Build 345161,206,982 - 161,258,990NCBI
Celera5157,305,487 - 157,357,959 (+)NCBICelera
Cytogenetic Map5q34NCBI
HuRef5156,366,532 - 156,419,379 (+)NCBIHuRef
CHM1_15160,706,630 - 160,759,375 (+)NCBICHM1_1
T2T-CHM13v2.05162,376,027 - 162,428,794 (+)NCBIT2T-CHM13v2.0
Gabra1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81027,096,731 - 27,152,563 (-)NCBIGRCr8
mRatBN7.21026,595,151 - 26,650,611 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1026,595,160 - 26,650,864 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1031,330,824 - 31,385,752 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01030,819,357 - 30,874,277 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01026,306,024 - 26,360,948 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01027,310,718 - 27,371,802 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1027,310,725 - 27,366,665 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01027,154,354 - 27,209,873 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41027,258,813 - 27,313,725 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11027,261,880 - 27,312,049 (-)NCBI
Celera1026,109,305 - 26,164,180 (-)NCBICelera
Cytogenetic Map10q21NCBI
Gabra1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540815,608,984 - 15,662,597 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540815,608,984 - 15,662,309 (+)NCBIChiLan1.0ChiLan1.0
GABRA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24157,030,426 - 157,083,204 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15155,169,973 - 155,222,751 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05157,234,725 - 157,287,475 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15163,928,392 - 163,981,127 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5163,928,392 - 163,981,117 (+)Ensemblpanpan1.1panPan2
GABRA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1449,006,981 - 49,065,205 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl449,009,495 - 49,062,581 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha448,898,592 - 48,956,801 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0449,439,269 - 49,497,701 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl449,421,345 - 49,497,509 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1449,246,182 - 49,304,589 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0449,379,685 - 49,437,823 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0449,902,613 - 49,960,850 (-)NCBIUU_Cfam_GSD_1.0
Gabra1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213103,356,153 - 103,409,858 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365151,805,239 - 1,859,600 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365151,806,721 - 1,859,227 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GABRA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1661,656,590 - 61,723,448 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11661,656,583 - 61,723,428 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21666,816,724 - 66,883,547 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GABRA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12364,199,372 - 64,255,996 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2364,200,752 - 64,255,996 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603413,304,237 - 13,354,528 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gabra1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473327,708,271 - 27,763,523 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473327,708,364 - 27,763,824 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gabra1
1683 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1165
Count of miRNA genes:576
Interacting mature miRNAs:732
Transcripts:ENSMUST00000020707, ENSMUST00000132971, ENSMUST00000153147, ENSMUST00000169305
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1301814Bbaa7_mB.burgdorferi-associated arthritis 7 (mouse)Not determined112601178044264695Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
10043922Alcw9_malcohol withdrawal 9 (mouse)Not determined113557861644065931Mouse
1301718Pbw3_mpentobarbital withdrawal QTL 3 (mouse)Not determined113557861644065931Mouse
1558769Zolw1_mzolpidem withdrawal 1 (mouse)Not determined113557861644065931Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse

Markers in Region
M63436  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381142,132,729 - 42,132,832UniSTSGRCm38
MGSCv371141,946,231 - 41,946,334UniSTSGRCm37
Celera1145,954,774 - 45,954,877UniSTS
Cytogenetic Map11A5UniSTS
cM Map1119.0UniSTS
Whitehead/MRC_RH11627.97UniSTS
Gabra1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A5UniSTS
cM Map1119.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001359035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK034095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE945884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M63436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M86566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X61430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000020707   ⟹   ENSMUSP00000020707
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1142,021,766 - 42,073,757 (-)Ensembl
GRCm38.p6 Ensembl1142,130,939 - 42,182,930 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132971   ⟹   ENSMUSP00000126611
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1142,066,811 - 42,073,757 (-)Ensembl
GRCm38.p6 Ensembl1142,175,984 - 42,182,930 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153147   ⟹   ENSMUSP00000129056
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1142,045,836 - 42,070,783 (-)Ensembl
GRCm38.p6 Ensembl1142,155,009 - 42,179,956 (-)Ensembl
RefSeq Acc Id: ENSMUST00000169305
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1142,068,117 - 42,073,287 (-)Ensembl
GRCm38.p6 Ensembl1142,177,290 - 42,182,460 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205546   ⟹   ENSMUSP00000146133
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1142,021,766 - 42,072,990 (-)Ensembl
GRCm38.p6 Ensembl1142,130,939 - 42,182,163 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206085   ⟹   ENSMUSP00000146285
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1142,070,387 - 42,073,737 (-)Ensembl
GRCm38.p6 Ensembl1142,179,560 - 42,182,910 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206105   ⟹   ENSMUSP00000145949
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1142,026,385 - 42,070,670 (-)Ensembl
GRCm38.p6 Ensembl1142,135,558 - 42,179,843 (-)Ensembl
RefSeq Acc Id: ENSMUST00000207274   ⟹   ENSMUSP00000147186
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1142,044,216 - 42,072,931 (-)Ensembl
GRCm38.p6 Ensembl1142,153,389 - 42,182,104 (-)Ensembl
RefSeq Acc Id: NM_001359035   ⟹   NP_001345964
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391142,021,766 - 42,073,025 (-)NCBI
GRCm381142,130,939 - 42,182,198 (-)NCBI
Sequence:
RefSeq Acc Id: NM_010250   ⟹   NP_034380
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391142,021,766 - 42,073,757 (-)NCBI
GRCm381142,130,939 - 42,182,930 (-)NCBI
MGSCv371141,944,982 - 41,996,432 (-)RGD
Celera1145,952,987 - 46,009,149 (-)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006532195   ⟹   XP_006532258
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391142,021,766 - 42,073,777 (-)NCBI
GRCm381142,130,939 - 42,182,949 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314259   ⟹   XP_017169748
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391142,021,766 - 42,073,893 (-)NCBI
GRCm381142,130,939 - 42,183,066 (-)NCBI
Sequence:
RefSeq Acc Id: NP_034380   ⟸   NM_010250
- Peptide Label: precursor
- UniProtKB: P18504 (UniProtKB/Swiss-Prot),   P62812 (UniProtKB/Swiss-Prot),   Q3URD4 (UniProtKB/TrEMBL),   Q544F7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532258   ⟸   XM_006532195
- Peptide Label: isoform X1
- UniProtKB: Q3URD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169748   ⟸   XM_017314259
- Peptide Label: isoform X2
- UniProtKB: P18504 (UniProtKB/Swiss-Prot),   P62812 (UniProtKB/Swiss-Prot),   Q544F7 (UniProtKB/TrEMBL),   Q3URD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001345964   ⟸   NM_001359035
- Peptide Label: precursor
- UniProtKB: P62812 (UniProtKB/Swiss-Prot),   P18504 (UniProtKB/Swiss-Prot),   Q544F7 (UniProtKB/TrEMBL),   Q3URD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000145949   ⟸   ENSMUST00000206105
RefSeq Acc Id: ENSMUSP00000146285   ⟸   ENSMUST00000206085
RefSeq Acc Id: ENSMUSP00000126611   ⟸   ENSMUST00000132971
RefSeq Acc Id: ENSMUSP00000020707   ⟸   ENSMUST00000020707
RefSeq Acc Id: ENSMUSP00000146133   ⟸   ENSMUST00000205546
RefSeq Acc Id: ENSMUSP00000147186   ⟸   ENSMUST00000207274
RefSeq Acc Id: ENSMUSP00000129056   ⟸   ENSMUST00000153147
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62812-F1-model_v2 AlphaFold P62812 1-455 view protein structure

Promoters
RGD ID:6820209
Promoter ID:MM_KWN:7007
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:AK020669_9630003H22RIK,   OTTMUST00000012129,   OTTMUST00000012130,   OTTMUST00000012131
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361141,995,811 - 41,996,462 (-)MPROMDB
RGD ID:8674324
Promoter ID:EPDNEW_M15192
Type:initiation region
Name:Gabra1_1
Description:Mus musculus gamma-aminobutyric acid A receptor, subunit alpha1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15193  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381142,182,255 - 42,182,315EPDNEW
RGD ID:8674326
Promoter ID:EPDNEW_M15193
Type:initiation region
Name:Gabra1_2
Description:Mus musculus gamma-aminobutyric acid A receptor, subunit alpha1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15192  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381142,182,865 - 42,182,925EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95613 AgrOrtholog
Ensembl Genes ENSMUSG00000010803 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020707 ENTREZGENE
  ENSMUST00000020707.12 UniProtKB/Swiss-Prot
  ENSMUST00000132971.3 UniProtKB/TrEMBL
  ENSMUST00000153147.3 UniProtKB/TrEMBL
  ENSMUST00000205546 ENTREZGENE
  ENSMUST00000205546.2 UniProtKB/Swiss-Prot
  ENSMUST00000206085.2 UniProtKB/TrEMBL
  ENSMUST00000206105.2 UniProtKB/TrEMBL
  ENSMUST00000207274.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.390 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.70.170.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GABAA/Glycine_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GABAAa_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GABBAa1_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Gabra-1-6_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GABRA1_ECD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neur_chan_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neur_chan_lig-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neur_channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neuro-gated_channel_TM_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neuro_actylchol_rec UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neurotrans-gated_channel_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neurotransmitter_ion_chnl_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14394 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:95613 ENTREZGENE
NCBI Gene 14394 ENTREZGENE
PANTHER GAMMA-AMINOBUTYRIC ACID RECEPTOR SUBUNIT ALPHA-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR18945 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Neur_chan_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neur_chan_memb UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB GABRA1 RGD
PhenoGen Gabra1 PhenoGen
PRINTS GABAARALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GABAARALPHA1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GABAARECEPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NRIONCHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NEUROTR_ION_CHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF63712 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF90112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0U1RPE4_MOUSE UniProtKB/TrEMBL
  A0A0U1RQ83_MOUSE UniProtKB/TrEMBL
  A0A140LJE7_MOUSE UniProtKB/TrEMBL
  E9PXL4_MOUSE UniProtKB/TrEMBL
  E9Q2L8_MOUSE UniProtKB/TrEMBL
  GBRA1_MOUSE UniProtKB/Swiss-Prot
  P18504 ENTREZGENE
  P62812 ENTREZGENE
  Q3URD4 ENTREZGENE, UniProtKB/TrEMBL
  Q544F7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary P18504 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-27 Gabra1  gamma-aminobutyric acid type A receptor subunit alpha 1  Gabra1  gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1  Symbol and/or name change 5135510 APPROVED