Tpbg (trophoblast glycoprotein) - Rat Genome Database

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Gene: Tpbg (trophoblast glycoprotein) Rattus norvegicus
Analyze
Symbol: Tpbg
Name: trophoblast glycoprotein
RGD ID: 621453
Description: Predicted to be involved in negative regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within several processes, including dendrite arborization; olfactory learning; and positive regulation of intracellular signal transduction. Predicted to be located in axon terminus; dendrite; and endoplasmic reticulum. Predicted to be active in plasma membrane. Orthologous to human TPBG (trophoblast glycoprotein); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5T4; 5T4 oncofetal trophoblast glycoprotein; 5T4 oncotrophoblast glycoprotein; MGC93332; WAIF1; wnt-activated inhibitory factor 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8895,673,993 - 95,677,364 (+)NCBIGRCr8
mRatBN7.2886,793,953 - 86,797,324 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl886,793,749 - 86,797,741 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx892,462,281 - 92,465,651 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0890,661,732 - 90,665,103 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0888,505,828 - 88,509,196 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0893,491,761 - 93,495,132 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl893,491,761 - 93,495,130 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0893,006,542 - 93,009,913 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4891,075,960 - 91,079,329 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1891,095,414 - 91,098,784 (+)NCBI
Celera886,406,590 - 86,409,959 (+)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-palmitoylglycerol  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
chlorpyrifos  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
corticosterone  (EXP)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
DDE  (ISO)
dibutyl phthalate  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
flavonoids  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
gentamycin  (EXP)
ivermectin  (ISO)
mercury dibromide  (ISO)
methylmercury chloride  (ISO)
nickel sulfate  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenylmercury acetate  (ISO)
potassium dichromate  (ISO)
progesterone  (EXP,ISO)
quercetin  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Glycosylation and epitope mapping of the 5T4 glycoprotein oncofoetal antigen. Shaw DM, etal., Biochem J 2002 Apr 1;363(Pt 1):137-45.
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:15977177   PMID:19581412   PMID:24613359  


Genomics

Comparative Map Data
Tpbg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8895,673,993 - 95,677,364 (+)NCBIGRCr8
mRatBN7.2886,793,953 - 86,797,324 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl886,793,749 - 86,797,741 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx892,462,281 - 92,465,651 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0890,661,732 - 90,665,103 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0888,505,828 - 88,509,196 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0893,491,761 - 93,495,132 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl893,491,761 - 93,495,130 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0893,006,542 - 93,009,913 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4891,075,960 - 91,079,329 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1891,095,414 - 91,098,784 (+)NCBI
Celera886,406,590 - 86,409,959 (+)NCBICelera
Cytogenetic Map8q31NCBI
TPBG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38682,362,983 - 82,367,420 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl682,363,206 - 82,367,420 (+)EnsemblGRCh38hg38GRCh38
GRCh37683,072,700 - 83,077,137 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36683,130,258 - 83,133,347 (+)NCBINCBI36Build 36hg18NCBI36
Build 34683,130,257 - 83,133,333NCBI
Celera683,506,010 - 83,510,221 (+)NCBICelera
Cytogenetic Map6q14.1NCBI
HuRef680,300,641 - 80,304,852 (+)NCBIHuRef
CHM1_1683,170,653 - 83,174,864 (+)NCBICHM1_1
T2T-CHM13v2.0683,582,429 - 83,586,866 (+)NCBIT2T-CHM13v2.0
Tpbg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39985,724,433 - 85,729,110 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl985,724,433 - 85,729,093 (+)EnsemblGRCm39 Ensembl
GRCm38985,842,380 - 85,847,057 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl985,842,380 - 85,847,040 (+)EnsemblGRCm38mm10GRCm38
MGSCv37985,735,987 - 85,740,662 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36985,639,128 - 85,642,507 (+)NCBIMGSCv36mm8
Celera982,936,659 - 82,941,333 (+)NCBICelera
Cytogenetic Map9E3.1NCBI
cM Map946.4NCBI
Tpbg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541110,203,144 - 10,206,711 (+)NCBIChiLan1.0ChiLan1.0
TPBG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25102,464,594 - 102,473,670 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16100,349,222 - 100,353,825 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0680,265,172 - 80,273,022 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1683,530,184 - 83,536,290 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl683,530,571 - 83,531,915 (+)Ensemblpanpan1.1panPan2
TPBG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11242,872,289 - 42,878,071 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1242,871,239 - 42,875,151 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1242,750,516 - 42,753,814 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01243,640,373 - 43,643,675 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11242,958,895 - 42,962,193 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01242,928,419 - 42,931,719 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01243,083,154 - 43,086,460 (+)NCBIUU_Cfam_GSD_1.0
Tpbg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494678,192,165 - 78,195,794 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365108,275,660 - 8,278,367 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365108,274,760 - 8,278,955 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TPBG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl183,847,819 - 83,850,881 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1183,847,809 - 83,851,326 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2194,386,257 - 94,388,336 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TPBG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1137,047,658 - 7,051,390 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl137,049,415 - 7,050,680 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040183,264,600 - 183,268,868 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tpbg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479912,226,350 - 12,230,701 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479912,226,350 - 12,325,178 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tpbg
18 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:474
Count of miRNA genes:240
Interacting mature miRNAs:283
Transcripts:ENSRNOT00000014326
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)84329616998968765Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)84329616998968765Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)85404374498968765Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)84653172299083736Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83646953599083736Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84071306693965294Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
2303570Gluco48Glucose level QTL 482blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)84980583194805831Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)85423764499103503Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat

Markers in Region
RH133240  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2886,796,926 - 86,797,106 (+)MAPPERmRatBN7.2
Rnor_6.0893,494,735 - 93,494,914NCBIRnor6.0
Rnor_5.0893,009,516 - 93,009,695UniSTSRnor5.0
RGSC_v3.4891,078,934 - 91,079,113UniSTSRGSC3.4
Celera886,409,564 - 86,409,743UniSTS
RH 3.4 Map8997.7UniSTS
Cytogenetic Map8q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000014326   ⟹   ENSRNOP00000014326
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl886,794,685 - 86,797,741 (+)Ensembl
Rnor_6.0 Ensembl893,491,761 - 93,495,130 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089491   ⟹   ENSRNOP00000075124
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl886,793,759 - 86,797,741 (+)Ensembl
Rnor_6.0 Ensembl893,492,122 - 93,495,125 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104677   ⟹   ENSRNOP00000085521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl886,793,749 - 86,797,741 (+)Ensembl
RefSeq Acc Id: NM_031807   ⟹   NP_113995
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8895,673,993 - 95,677,362 (+)NCBI
mRatBN7.2886,793,953 - 86,797,322 (+)NCBI
Rnor_6.0893,491,761 - 93,495,130 (+)NCBI
Rnor_5.0893,006,542 - 93,009,913 (+)NCBI
RGSC_v3.4891,075,960 - 91,079,329 (+)RGD
Celera886,406,590 - 86,409,959 (+)RGD
Sequence:
RefSeq Acc Id: XM_006243499   ⟹   XP_006243561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8895,674,036 - 95,677,364 (+)NCBI
mRatBN7.2886,794,188 - 86,797,324 (+)NCBI
Rnor_6.0893,491,984 - 93,495,132 (+)NCBI
Rnor_5.0893,006,542 - 93,009,913 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008766457   ⟹   XP_008764679
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8895,674,742 - 95,677,364 (+)NCBI
mRatBN7.2886,794,684 - 86,797,324 (+)NCBI
Rnor_6.0893,492,511 - 93,495,132 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595935   ⟹   XP_017451424
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8895,674,363 - 95,677,364 (+)NCBI
mRatBN7.2886,794,476 - 86,797,324 (+)NCBI
Rnor_6.0893,492,177 - 93,495,132 (+)NCBI
Sequence:
RefSeq Acc Id: NP_113995   ⟸   NM_031807
- Peptide Label: precursor
- UniProtKB: Q5PQV5 (UniProtKB/Swiss-Prot),   Q9QYD9 (UniProtKB/Swiss-Prot),   A6I1T6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243561   ⟸   XM_006243499
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008764679   ⟸   XM_008766457
- Peptide Label: isoform X1
- UniProtKB: Q9QYD9 (UniProtKB/Swiss-Prot),   Q5PQV5 (UniProtKB/Swiss-Prot),   A6I1T6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451424   ⟸   XM_017595935
- Peptide Label: isoform X1
- UniProtKB: Q9QYD9 (UniProtKB/Swiss-Prot),   Q5PQV5 (UniProtKB/Swiss-Prot),   A6I1T6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075124   ⟸   ENSRNOT00000089491
Ensembl Acc Id: ENSRNOP00000014326   ⟸   ENSRNOT00000014326
Ensembl Acc Id: ENSRNOP00000085521   ⟸   ENSRNOT00000104677
Protein Domains
LRRCT   LRRNT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5PQV5-F1-model_v2 AlphaFold Q5PQV5 1-426 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696159
Promoter ID:EPDNEW_R6681
Type:multiple initiation site
Name:Tpbg_1
Description:trophoblast glycoprotein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0893,492,073 - 93,492,133EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621453 AgrOrtholog
BioCyc Gene G2FUF-29645 BioCyc
Ensembl Genes ENSRNOG00000010694 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00065012452 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000014326.3 UniProtKB/Swiss-Prot
  ENSRNOT00000089491.2 UniProtKB/Swiss-Prot
  ENSRNOT00000104677.1 UniProtKB/Swiss-Prot
  ENSRNOT00065020268 UniProtKB/Swiss-Prot
  ENSRNOT00065020271 UniProtKB/Swiss-Prot
  ENSRNOT00065020273 UniProtKB/Swiss-Prot
Gene3D-CATH 3.80.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7193411 IMAGE-MGC_LOAD
InterPro Cys-rich_flank_reg_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Wnt_signaling_inhibitor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:83684 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93332 IMAGE-MGC_LOAD
NCBI Gene 83684 ENTREZGENE
PANTHER LP06937P UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TROPHOBLAST GLYCOPROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRCT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tpbg PhenoGen
PRINTS LEURICHRPT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE LRR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010694 RatGTEx
  ENSRNOG00065012452 RatGTEx
SMART LRR_TYP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRCT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6I1T6 ENTREZGENE, UniProtKB/TrEMBL
  Q5PQV5 ENTREZGENE
  Q9QYD9 ENTREZGENE
  TPBG_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q9QYD9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Tpbg  trophoblast glycoprotein      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Tpbg  trophoblast glycoprotein      Symbol and Name status set to provisional 70820 PROVISIONAL