Cdc42bpa (CDC42 binding protein kinase alpha) - Rat Genome Database

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Gene: Cdc42bpa (CDC42 binding protein kinase alpha) Rattus norvegicus
Analyze
Symbol: Cdc42bpa
Name: CDC42 binding protein kinase alpha
RGD ID: 621406
Description: Enables identical protein binding activity; ion binding activity; and protein serine/threonine kinase activity. Involved in actomyosin structure organization; cell migration; and regulation of small GTPase mediated signal transduction. Located in actomyosin; cell leading edge; and cell-cell junction. Orthologous to human CDC42BPA (CDC42 binding protein kinase alpha); INTERACTS WITH 1,1-dichloroethene; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CDC42-binding protein kinase alpha; Mrck; MRCK alpha; myotonic dystrophy kinase-related CDC42-binding kinase alpha; myotonic dystrophy protein kinase-like alpha; mytonic dystrophy kinase-related Cdc42-binding kinase; Pk428; Ser-Thr protein kinase related to the myotonic dystrophy protein kinase; serine/threonine-protein kinase MRCK alpha
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81394,215,359 - 94,435,681 (+)NCBIGRCr8
mRatBN7.21391,683,775 - 91,903,732 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1391,684,007 - 91,903,732 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1394,189,194 - 94,408,912 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01395,589,354 - 95,809,080 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01392,764,044 - 92,983,789 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01398,231,326 - 98,447,762 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1398,231,326 - 98,447,762 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013103,238,053 - 103,453,991 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41395,640,342 - 95,865,501 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11395,829,277 - 96,054,435 (+)NCBI
Celera1391,234,788 - 91,448,806 (+)NCBICelera
Cytogenetic Map13q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
5-azacytidine  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP,ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP,ISO)
bucladesine  (ISO)
butanal  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
chlorpyrifos  (EXP)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
decabromodiphenyl ether  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP,ISO)
diethylstilbestrol  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fonofos  (ISO)
fulvestrant  (ISO)
glyphosate  (EXP)
irinotecan  (ISO)
medroxyprogesterone acetate  (ISO)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
N-nitrosodiethylamine  (EXP)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
parathion  (ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sevoflurane  (ISO)
succimer  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
temozolomide  (ISO)
terbufos  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
actomyosin  (IBA,IDA,IEA,ISO)
cell leading edge  (IDA)
cell-cell junction  (IDA)
cytoplasm  (IBA,IEA)
cytoskeleton  (IBA)
lamellipodium  (IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Adaptor protein LRAP25 mediates myotonic dystrophy kinase-related Cdc42-binding kinase (MRCK) regulation of LIMK1 protein in lamellipodial F-actin dynamics. Lee IC, etal., J Biol Chem. 2014 Sep 26;289(39):26989-7003. doi: 10.1074/jbc.M114.588079. Epub 2014 Aug 8.
3. Myotonic dystrophy kinase-related Cdc42-binding kinase acts as a Cdc42 effector in promoting cytoskeletal reorganization. Leung T, etal., Mol Cell Biol 1998 Jan;18(1):130-40.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. A tripartite complex containing MRCK modulates lamellar actomyosin retrograde flow. Tan I, etal., Cell. 2008 Oct 3;135(1):123-36. doi: 10.1016/j.cell.2008.09.018.
10. Intermolecular and intramolecular interactions regulate catalytic activity of myotonic dystrophy kinase-related Cdc42-binding kinase alpha. Tan I, etal., Mol Cell Biol. 2001 Apr;21(8):2767-78.
Additional References at PubMed
PMID:9092543   PMID:11340065   PMID:11399775   PMID:15882626   PMID:17702745   PMID:19056867   PMID:21457715   PMID:23414517  


Genomics

Comparative Map Data
Cdc42bpa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81394,215,359 - 94,435,681 (+)NCBIGRCr8
mRatBN7.21391,683,775 - 91,903,732 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1391,684,007 - 91,903,732 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1394,189,194 - 94,408,912 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01395,589,354 - 95,809,080 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01392,764,044 - 92,983,789 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01398,231,326 - 98,447,762 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1398,231,326 - 98,447,762 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013103,238,053 - 103,453,991 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41395,640,342 - 95,865,501 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11395,829,277 - 96,054,435 (+)NCBI
Celera1391,234,788 - 91,448,806 (+)NCBICelera
Cytogenetic Map13q26NCBI
CDC42BPA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381226,989,858 - 227,318,492 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1226,989,865 - 227,318,492 (-)EnsemblGRCh38hg38GRCh38
GRCh371227,177,559 - 227,506,193 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361225,244,189 - 225,572,449 (-)NCBINCBI36Build 36hg18NCBI36
Build 341223,486,787 - 223,812,561NCBI
Celera1200,368,385 - 200,714,137 (-)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1197,694,156 - 198,022,367 (-)NCBIHuRef
CHM1_11228,450,048 - 228,778,008 (-)NCBICHM1_1
T2T-CHM13v2.01226,178,223 - 226,506,850 (-)NCBIT2T-CHM13v2.0
Cdc42bpa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391179,787,058 - 179,993,171 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1179,788,037 - 179,993,168 (+)EnsemblGRCm39 Ensembl
GRCm381179,960,079 - 180,165,606 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1179,960,472 - 180,165,603 (+)EnsemblGRCm38mm10GRCm38
MGSCv371181,891,220 - 182,095,733 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361181,797,234 - 182,002,443 (+)NCBIMGSCv36mm8
Celera1187,025,201 - 187,227,563 (+)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.01NCBI
Cdc42bpa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554069,906,195 - 10,174,465 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554069,906,195 - 10,178,281 (+)NCBIChiLan1.0ChiLan1.0
CDC42BPA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2122,218,301 - 22,550,221 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1122,166,675 - 22,498,600 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01202,448,571 - 202,780,486 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11207,438,330 - 207,767,265 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1207,438,330 - 207,766,907 (-)Ensemblpanpan1.1panPan2
CDC42BPA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1737,775,133 - 38,084,136 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl737,775,127 - 38,081,733 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha737,257,758 - 37,566,798 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0737,608,217 - 37,918,760 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl737,608,477 - 37,915,525 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1737,448,901 - 37,757,738 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0737,456,073 - 37,764,872 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0737,725,913 - 38,035,278 (+)NCBIUU_Cfam_GSD_1.0
Cdc42bpa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934450,751,931 - 51,060,891 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365263,690,422 - 3,995,095 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365263,686,403 - 3,996,035 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC42BPA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1014,652,855 - 14,940,825 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11014,649,278 - 14,940,988 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21016,930,459 - 17,259,392 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDC42BPA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1252,463,764 - 2,777,699 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl252,464,952 - 2,773,353 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660552,418,681 - 2,742,409 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdc42bpa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477112,314,570 - 12,591,015 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477112,314,566 - 12,591,071 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cdc42bpa
873 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:89
Count of miRNA genes:70
Interacting mature miRNAs:83
Transcripts:ENSRNOT00000003837
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 40 41 28 13 28 8 8 74 35 37 11 8
Low 2 3 16 13 6 13 3 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC139413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF021935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000003837   ⟹   ENSRNOP00000003837
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1391,684,007 - 91,903,732 (+)Ensembl
Rnor_6.0 Ensembl1398,231,326 - 98,447,762 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082844   ⟹   ENSRNOP00000073612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1391,768,441 - 91,903,732 (+)Ensembl
Rnor_6.0 Ensembl1398,311,827 - 98,447,312 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102712   ⟹   ENSRNOP00000093143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1391,684,007 - 91,903,732 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105577   ⟹   ENSRNOP00000081450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1391,684,007 - 91,903,732 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109203   ⟹   ENSRNOP00000086891
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1391,684,007 - 91,903,732 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116713   ⟹   ENSRNOP00000077481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1391,684,007 - 91,903,732 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119463   ⟹   ENSRNOP00000078690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1391,684,007 - 91,903,732 (+)Ensembl
RefSeq Acc Id: NM_053657   ⟹   NP_446109
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,215,959 - 94,435,681 (+)NCBI
mRatBN7.21391,684,007 - 91,903,732 (+)NCBI
Rnor_6.01398,231,326 - 98,447,762 (+)NCBI
Rnor_5.013103,238,053 - 103,453,991 (+)NCBI
RGSC_v3.41395,640,342 - 95,865,501 (+)RGD
Celera1391,234,788 - 91,448,806 (+)RGD
Sequence:
RefSeq Acc Id: XM_039090235   ⟹   XP_038946163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,215,359 - 94,435,674 (+)NCBI
mRatBN7.21391,683,776 - 91,903,732 (+)NCBI
RefSeq Acc Id: XM_039090237   ⟹   XP_038946165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,216,141 - 94,435,674 (+)NCBI
mRatBN7.21391,683,777 - 91,903,732 (+)NCBI
RefSeq Acc Id: XM_039090242   ⟹   XP_038946170
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,216,141 - 94,435,674 (+)NCBI
mRatBN7.21391,683,777 - 91,903,732 (+)NCBI
RefSeq Acc Id: XM_039090245   ⟹   XP_038946173
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,216,141 - 94,435,674 (+)NCBI
mRatBN7.21391,683,778 - 91,903,732 (+)NCBI
RefSeq Acc Id: XM_039090246   ⟹   XP_038946174
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,216,141 - 94,435,674 (+)NCBI
mRatBN7.21391,683,777 - 91,903,732 (+)NCBI
RefSeq Acc Id: XM_039090247   ⟹   XP_038946175
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,216,141 - 94,435,674 (+)NCBI
mRatBN7.21391,683,778 - 91,903,732 (+)NCBI
RefSeq Acc Id: XM_039090251   ⟹   XP_038946179
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,215,397 - 94,435,674 (+)NCBI
mRatBN7.21391,683,779 - 91,903,732 (+)NCBI
RefSeq Acc Id: XM_039090256   ⟹   XP_038946184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,216,141 - 94,435,674 (+)NCBI
mRatBN7.21391,683,778 - 91,903,732 (+)NCBI
RefSeq Acc Id: XM_039090257   ⟹   XP_038946185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,216,141 - 94,435,674 (+)NCBI
mRatBN7.21391,683,780 - 91,903,732 (+)NCBI
RefSeq Acc Id: XM_039090259   ⟹   XP_038946187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,216,141 - 94,435,674 (+)NCBI
mRatBN7.21391,683,781 - 91,903,732 (+)NCBI
RefSeq Acc Id: XM_039090261   ⟹   XP_038946189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,216,141 - 94,435,674 (+)NCBI
mRatBN7.21391,683,782 - 91,903,732 (+)NCBI
RefSeq Acc Id: XM_039090262   ⟹   XP_038946190
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,215,397 - 94,435,674 (+)NCBI
mRatBN7.21391,683,778 - 91,903,732 (+)NCBI
RefSeq Acc Id: XM_039090264   ⟹   XP_038946192
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,216,141 - 94,435,674 (+)NCBI
mRatBN7.21391,683,781 - 91,903,732 (+)NCBI
RefSeq Acc Id: XM_039090266   ⟹   XP_038946194
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,216,141 - 94,435,674 (+)NCBI
mRatBN7.21391,683,781 - 91,903,732 (+)NCBI
RefSeq Acc Id: XM_063271956   ⟹   XP_063128026
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,216,141 - 94,435,674 (+)NCBI
RefSeq Acc Id: XM_063271957   ⟹   XP_063128027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,216,141 - 94,435,674 (+)NCBI
RefSeq Acc Id: XM_063271958   ⟹   XP_063128028
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,216,639 - 94,435,674 (+)NCBI
RefSeq Acc Id: XM_063271959   ⟹   XP_063128029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,215,397 - 94,435,674 (+)NCBI
RefSeq Acc Id: XM_063271960   ⟹   XP_063128030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,216,141 - 94,435,674 (+)NCBI
RefSeq Acc Id: XM_063271961   ⟹   XP_063128031
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81394,216,141 - 94,431,736 (+)NCBI
Protein Sequences
Protein RefSeqs NP_446109 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946163 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946165 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946170 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946173 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946174 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946175 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946179 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946184 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946185 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946187 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946189 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946190 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946192 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946194 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128026 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128027 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128028 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128029 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128030 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128031 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC02941 (Get FASTA)   NCBI Sequence Viewer  
  EDL94816 (Get FASTA)   NCBI Sequence Viewer  
  EDL94817 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000003837
  ENSRNOP00000003837.2
  ENSRNOP00000073612
  ENSRNOP00000073612.2
  ENSRNOP00000077481
  ENSRNOP00000077481.1
  ENSRNOP00000078690.1
  ENSRNOP00000081450
  ENSRNOP00000081450.1
  ENSRNOP00000086891.1
  ENSRNOP00000093143
  ENSRNOP00000093143.1
GenBank Protein O54874 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_446109   ⟸   NM_053657
- UniProtKB: O54874 (UniProtKB/Swiss-Prot),   G3V6C9 (UniProtKB/TrEMBL),   A6JGG0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073612   ⟸   ENSRNOT00000082844
RefSeq Acc Id: ENSRNOP00000003837   ⟸   ENSRNOT00000003837
RefSeq Acc Id: XP_038946163   ⟸   XM_039090235
- Peptide Label: isoform X1
- UniProtKB: O54874 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038946170   ⟸   XM_039090242
- Peptide Label: isoform X3
- UniProtKB: O54874 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038946165   ⟸   XM_039090237
- Peptide Label: isoform X2
- UniProtKB: O54874 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038946174   ⟸   XM_039090246
- Peptide Label: isoform X5
- UniProtKB: O54874 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038946173   ⟸   XM_039090245
- Peptide Label: isoform X4
- UniProtKB: O54874 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038946175   ⟸   XM_039090247
- Peptide Label: isoform X6
- UniProtKB: O54874 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038946184   ⟸   XM_039090256
- Peptide Label: isoform X10
- UniProtKB: A0A8I6A4M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946190   ⟸   XM_039090262
- Peptide Label: isoform X16
- UniProtKB: A0A8I6G3L7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946179   ⟸   XM_039090251
- Peptide Label: isoform X8
- UniProtKB: O54874 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038946185   ⟸   XM_039090257
- Peptide Label: isoform X11
- UniProtKB: O54874 (UniProtKB/Swiss-Prot),   A0A8I6AWL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946187   ⟸   XM_039090259
- Peptide Label: isoform X13
- UniProtKB: O54874 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038946192   ⟸   XM_039090264
- Peptide Label: isoform X17
- UniProtKB: A0A8I6A4M2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946194   ⟸   XM_039090266
- Peptide Label: isoform X20
- UniProtKB: A0A8I5ZRP1 (UniProtKB/TrEMBL),   A0A8I6G3L7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946189   ⟸   XM_039090261
- Peptide Label: isoform X15
- UniProtKB: O54874 (UniProtKB/Swiss-Prot),   A0A8I5Y183 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000093143   ⟸   ENSRNOT00000102712
RefSeq Acc Id: ENSRNOP00000086891   ⟸   ENSRNOT00000109203
RefSeq Acc Id: ENSRNOP00000078690   ⟸   ENSRNOT00000119463
RefSeq Acc Id: ENSRNOP00000081450   ⟸   ENSRNOT00000105577
RefSeq Acc Id: ENSRNOP00000077481   ⟸   ENSRNOT00000116713
RefSeq Acc Id: XP_063128029   ⟸   XM_063271959
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063128026   ⟸   XM_063271956
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063128027   ⟸   XM_063271957
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063128030   ⟸   XM_063271960
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063128031   ⟸   XM_063271961
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063128028   ⟸   XM_063271958
- Peptide Label: isoform X12
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O54874-F1-model_v2 AlphaFold O54874 1-1732 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699055
Promoter ID:EPDNEW_R9580
Type:single initiation site
Name:Cdc42bpa_1
Description:CDC42 binding protein kinase alpha
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01398,231,519 - 98,231,579EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621406 AgrOrtholog
BioCyc Gene G2FUF-17134 BioCyc
Ensembl Genes ENSRNOG00000002841 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003837 ENTREZGENE
  ENSRNOT00000003837.4 UniProtKB/TrEMBL
  ENSRNOT00000082844.2 UniProtKB/TrEMBL
  ENSRNOT00000102712.1 UniProtKB/TrEMBL
  ENSRNOT00000105577.1 UniProtKB/TrEMBL
  ENSRNOT00000109203.1 UniProtKB/TrEMBL
  ENSRNOT00000116713.1 UniProtKB/TrEMBL
  ENSRNOT00000119463.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1490 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.5.340 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.60.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AGC-kinase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C1-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CNH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CRIB_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KELK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myotonic_dystrophy_kinase_coil UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PE/DAG-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser/Thr_kinase_MRCK_alpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:114116 UniProtKB/Swiss-Prot
NCBI Gene 114116 ENTREZGENE
PANTHER MYOTONIC DYSTROPHY S/T KINASE-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR22988:SF31 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam C1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CNH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DMPK_coil UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KELK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cdc42bpa PhenoGen
PROSITE AGC_KINASE_CTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CNH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CRIB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_DAG_PE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_DAG_PE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002841 RatGTEx
SMART CNH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S_TK_X UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S_TKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00109 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00233 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57889 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tricorn protease domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K5Z1_RAT UniProtKB/TrEMBL
  A0A8I5Y183 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZRP1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A4M2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AWL9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G3L7 ENTREZGENE, UniProtKB/TrEMBL
  A6JGG0 ENTREZGENE, UniProtKB/TrEMBL
  A6JGG1_RAT UniProtKB/TrEMBL
  G3V6C9 ENTREZGENE, UniProtKB/TrEMBL
  MRCKA_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Cdc42bpa  CDC42 binding protein kinase alpha  Pk428  Ser-Thr protein kinase related to the myotonic dystrophy protein kinase  Symbol and Name updated 1299863 APPROVED
2002-08-07 Pk428  Ser-Thr protein kinase related to the myotonic dystrophy protein kinase      Symbol and Name status set to provisional 70820 PROVISIONAL