Psma1 (proteasome subunit alpha 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Psma1 (proteasome subunit alpha 1) Mus musculus
Analyze
Symbol: Psma1
Name: proteasome subunit alpha 1
RGD ID: 62133
MGI Page MGI
Description: Enables lipopolysaccharide binding activity. Involved in negative regulation of inflammatory response to antigenic stimulus. Part of proteasome core complex. Is expressed in several structures, including alimentary system; brain ventricular layer; cranial ganglion; liver; and sensory organ. Orthologous to human PSMA1 (proteasome 20S subunit alpha 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 20S proteasome subunit C2; alpha-type; C2; HC2; macropain subunit C2; multicatalytic endopeptidase complex subunit C2; Pro; Pros-30; proteasome (prosome, macropain) subunit, alpha type 1; proteasome component C2; proteasome nu chain; proteasome subunit alpha type-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm11637   Gm19068   Gm19090  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397113,863,785 - 113,875,351 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7113,863,841 - 113,875,353 (-)EnsemblGRCm39 Ensembl
GRCm387114,264,550 - 114,276,116 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7114,264,606 - 114,276,118 (-)EnsemblGRCm38mm10GRCm38
MGSCv377121,408,064 - 121,419,630 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367114,055,789 - 114,067,280 (-)NCBIMGSCv36mm8
Celera7114,225,919 - 114,237,486 (-)NCBICelera
Cytogenetic Map7F1NCBI
cM Map759.32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(1->4)-beta-D-glucan  (EXP)
(Z)-3-butylidenephthalide  (ISO)
1,2-dimethylhydrazine  (EXP)
1-bromopropane  (ISO)
17alpha-ethynylestradiol  (EXP)
1H-pyrazole  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrabromodibenzodioxine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2-nitrofluorene  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzatropine  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bromobenzene  (ISO)
cadmium dichloride  (ISO)
cisplatin  (EXP)
cyclosporin A  (ISO)
D-glucose  (ISO)
deguelin  (ISO)
dexamethasone  (ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
dichlorine  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
ethanol  (EXP,ISO)
fenpyroximate  (ISO)
finasteride  (ISO)
fipronil  (ISO)
flavonoids  (ISO)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
gentamycin  (ISO)
glucose  (ISO)
indometacin  (ISO)
inulin  (EXP)
isotretinoin  (ISO)
ivermectin  (ISO)
leflunomide  (ISO)
Mesaconitine  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
microcystin RR  (ISO)
monocrotaline  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodimethylamine  (ISO)
nefazodone  (ISO)
nimesulide  (ISO)
Nonylphenol  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (EXP)
Pentoxifylline  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (ISO)
picoxystrobin  (ISO)
piperonyl butoxide  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (ISO)
ritonavir  (ISO)
rotenone  (EXP)
sarin  (ISO)
sirolimus  (EXP)
sodium arsenite  (EXP)
succimer  (EXP)
sulfadimethoxine  (ISO)
tamoxifen  (EXP,ISO)
tetrachloromethane  (EXP)
trichloroethene  (ISO)
tungsten  (EXP)
valdecoxib  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The complete primary structure of mouse 20S proteasomes. Elenich LA, etal., Immunogenetics 1999 Sep;49(10):835-42.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10852819   PMID:10873386   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12874245   PMID:14610273   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:16857966   PMID:16944949   PMID:16973439   PMID:17292860   PMID:18467495   PMID:18554416   PMID:19526544   PMID:20498273   PMID:21267068   PMID:21565611  
PMID:21677750   PMID:21873635   PMID:26222436   PMID:28378742   PMID:29676259   PMID:29950673   PMID:30196744   PMID:30409884   PMID:32325033   PMID:32554809   PMID:32839293  


Genomics

Comparative Map Data
Psma1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397113,863,785 - 113,875,351 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7113,863,841 - 113,875,353 (-)EnsemblGRCm39 Ensembl
GRCm387114,264,550 - 114,276,116 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7114,264,606 - 114,276,118 (-)EnsemblGRCm38mm10GRCm38
MGSCv377121,408,064 - 121,419,630 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367114,055,789 - 114,067,280 (-)NCBIMGSCv36mm8
Celera7114,225,919 - 114,237,486 (-)NCBICelera
Cytogenetic Map7F1NCBI
cM Map759.32NCBI
PSMA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381114,504,876 - 14,643,662 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1114,504,874 - 14,643,635 (-)EnsemblGRCh38hg38GRCh38
GRCh371114,526,422 - 14,665,208 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361114,482,998 - 14,621,739 (-)NCBINCBI36Build 36hg18NCBI36
Build 341114,482,998 - 14,621,739NCBI
Celera1114,651,494 - 14,790,271 (-)NCBICelera
Cytogenetic Map11p15.2NCBI
HuRef1114,207,557 - 14,313,706 (-)NCBIHuRef
CHM1_11114,525,354 - 14,664,092 (-)NCBICHM1_1
T2T-CHM13v2.01114,600,152 - 14,738,957 (-)NCBIT2T-CHM13v2.0
Psma1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81177,876,838 - 177,887,857 (-)NCBIGRCr8
mRatBN7.21168,442,421 - 168,453,440 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1168,440,936 - 168,453,472 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1176,771,846 - 176,782,862 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01183,957,918 - 183,968,934 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01176,671,909 - 176,682,943 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01183,733,567 - 183,744,586 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,733,567 - 183,744,586 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01190,708,745 - 190,719,764 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41172,237,763 - 172,248,782 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11172,373,871 - 172,384,891 (-)NCBI
Celera1166,294,949 - 166,305,966 (-)NCBICelera
Cytogenetic Map1q34NCBI
Psma1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541429,665,335 - 29,679,922 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541429,667,417 - 29,679,510 (-)NCBIChiLan1.0ChiLan1.0
PSMA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2916,886,092 - 17,024,783 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11116,846,932 - 16,985,649 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01114,607,557 - 14,746,207 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11114,298,860 - 14,314,780 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1114,298,860 - 14,314,780 (-)Ensemblpanpan1.1panPan2
LOC102152879
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13024,114,023 - 24,116,951 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3024,089,251 - 24,090,279 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03024,283,760 - 24,285,132 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13024,209,220 - 24,210,232 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03024,291,908 - 24,293,280 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03024,435,997 - 24,437,025 (+)NCBIUU_Cfam_GSD_1.0
Psma1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494748,161,083 - 48,173,283 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365284,195,072 - 4,209,558 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365284,195,072 - 4,207,263 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl244,648,247 - 44,757,440 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1244,740,102 - 44,755,296 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2247,966,027 - 47,981,201 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSMA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1150,360,667 - 50,376,024 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038147,903,641 - 147,919,508 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psma1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247666,380,060 - 6,392,373 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247666,380,057 - 6,392,408 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Psma1
417 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:285
Count of miRNA genes:203
Interacting mature miRNAs:223
Transcripts:ENSMUST00000033008, ENSMUST00000123801, ENSMUST00000135570, ENSMUST00000154909
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
4141056Lskcn2_mLSK cell number 2 (mouse)Not determined108482996118693530Mouse
35673311Ari6_mantibody response to influenza 6, day 15, IgG2b (mouse)7108699207115099235Mouse
25394557Skmw64_mskeletal muscle weight 64, soleus (mouse)7108715780114592736Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse

Markers in Region
Psma1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv377121,417,559 - 121,417,971UniSTSGRCm37
Celera7114,235,415 - 114,235,827UniSTS
Cytogenetic Map7F1UniSTS
cM Map753.0UniSTS
cM Map753.0UniSTS
Psma1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387114,274,045 - 114,274,457UniSTSGRCm38
MGSCv377121,417,559 - 121,417,971UniSTSGRCm37
Celera7114,235,415 - 114,235,827UniSTS
Cytogenetic Map7F1UniSTS
cM Map753.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF060088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ272019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ272020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ272021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ272272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY108158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY425950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000033008   ⟹   ENSMUSP00000033008
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7113,863,841 - 113,875,353 (-)Ensembl
GRCm38.p6 Ensembl7114,264,606 - 114,276,118 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123801
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7113,873,038 - 113,875,278 (-)Ensembl
GRCm38.p6 Ensembl7114,273,803 - 114,276,043 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135570   ⟹   ENSMUSP00000147815
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7113,864,030 - 113,875,261 (-)Ensembl
GRCm38.p6 Ensembl7114,264,795 - 114,276,026 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154909
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7113,869,724 - 113,875,289 (-)Ensembl
GRCm38.p6 Ensembl7114,270,489 - 114,276,054 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210966
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7113,874,347 - 113,875,302 (-)Ensembl
GRCm38.p6 Ensembl7114,275,112 - 114,276,067 (-)Ensembl
RefSeq Acc Id: NM_011965   ⟹   NP_036095
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397113,863,785 - 113,875,351 (-)NCBI
GRCm387114,264,550 - 114,276,116 (-)ENTREZGENE
MGSCv377121,408,064 - 121,419,630 (-)RGD
Celera7114,225,919 - 114,237,486 (-)RGD
cM Map7 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_036095   ⟸   NM_011965
- UniProtKB: Q9R1P4 (UniProtKB/Swiss-Prot),   Q3TS44 (UniProtKB/TrEMBL),   Q8BTU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000033008   ⟸   ENSMUST00000033008
RefSeq Acc Id: ENSMUSP00000147815   ⟸   ENSMUST00000135570
Protein Domains
Proteasome alpha-type subunits

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9R1P4-F1-model_v2 AlphaFold Q9R1P4 1-263 view protein structure

Promoters
RGD ID:8665287
Promoter ID:EPDNEW_M10675
Type:initiation region
Name:Psma1_1
Description:Mus musculus proteasome (prosome, macropain) subunit, alpha type1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387114,276,060 - 114,276,120EPDNEW
RGD ID:6841866
Promoter ID:MM_KWN:52366
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000062381,   OTTMUST00000062383,   OTTMUST00000062384,   UC009JHZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367121,419,146 - 121,420,477 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1347005 AgrOrtholog
Ensembl Genes ENSMUSG00000030751 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033008 ENTREZGENE
  ENSMUST00000033008.10 UniProtKB/Swiss-Prot
  ENSMUST00000135570.8 UniProtKB/TrEMBL
Gene3D-CATH 3.60.20.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ntn_hydrolases_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_alpha-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_alpha1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_asu_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_sua/b UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:26440 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1347005 ENTREZGENE
NCBI Gene 26440 ENTREZGENE
PANTHER PROTEASOME SUBUNIT ALPHA/BETA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11599:SF12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Proteasome UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_A_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Psma1 PhenoGen
PROSITE PROTEASOME_ALPHA_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEASOME_ALPHA_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Proteasome_A_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56235 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1B0GS70_MOUSE UniProtKB/TrEMBL
  PSA1_MOUSE UniProtKB/Swiss-Prot
  Q3TS44 ENTREZGENE, UniProtKB/TrEMBL
  Q8BTU5 ENTREZGENE, UniProtKB/TrEMBL
  Q9JHS5_MOUSE UniProtKB/TrEMBL
  Q9R1P4 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-10-29 Psma1  proteasome subunit alpha 1  Psma1  proteasome (prosome, macropain) subunit, alpha type 1  Symbol and/or name change 5135510 APPROVED