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Gene: Atp2c1 (ATPase secretory pathway Ca2+ transporting 1) Rattus norvegicus
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Symbol: Atp2c1
Name: ATPase secretory pathway Ca2+ transporting 1
RGD ID: 621311
Description: Exhibits calcium transmembrane transporter activity, phosphorylative mechanism. Involved in calcium ion transport and cellular calcium ion homeostasis. Localizes to Golgi apparatus; cytoplasmic vesicle; and plasma membrane. Human ortholog(s) of this gene implicated in Hailey-Hailey disease. Orthologous to human ATP2C1 (ATPase secretory pathway Ca2+ transporting 1); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; INTERACTS WITH 17beta-estradiol; 2,4-dinitrotoluene; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: ATP-dependent Ca(2+) pump PMR1; ATPase 2C1; ATPase, Ca++ transporting, type 2C, member 1; ATPase, Ca++-sequestering; calcium-transporting ATPase 2C1; calcium-transporting ATPase type 2C member 1; MGC93231; secretory pathway Ca(2+)-ATPase 1; Spca1
Orthologs:
Homo sapiens (human) : ATP2C1 (ATPase secretory pathway Ca2+ transporting 1)  HGNC  Alliance
Mus musculus (house mouse) : Atp2c1 (ATPase, Ca++-sequestering)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Atp2c1 (ATPase secretory pathway Ca2+ transporting 1)
Pan paniscus (bonobo/pygmy chimpanzee) : ATP2C1 (ATPase secretory pathway Ca2+ transporting 1)
Canis lupus familiaris (dog) : ATP2C1 (ATPase secretory pathway Ca2+ transporting 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Atp2c1 (ATPase secretory pathway Ca2+ transporting 1)
Sus scrofa (pig) : ATP2C1 (ATPase secretory pathway Ca2+ transporting 1)
Chlorocebus sabaeus (African green monkey) : ATP2C1 (ATPase secretory pathway Ca2+ transporting 1)
Heterocephalus glaber (naked mole-rat) : Atp2c1 (ATPase secretory pathway Ca2+ transporting 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08113,953,959 - 114,039,965 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8113,955,647 - 114,013,623 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08113,341,077 - 113,426,614 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48110,516,092 - 110,603,620 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18110,562,294 - 110,623,075 (-)NCBI
Celera8105,376,283 - 105,459,249 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Atp2c1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 621311
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.