Ptma (prothymosin alpha) - Rat Genome Database

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Gene: Ptma (prothymosin alpha) Mus musculus
Analyze
Symbol: Ptma
Name: prothymosin alpha
RGD ID: 62120
MGI Page MGI
Description: Enables histone binding activity and histone chaperone activity. Involved in chromatin organization. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including alimentary system; branchial arch; central nervous system; extraembryonic component; and genitourinary system. Orthologous to human PTMA (prothymosin alpha).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC102090; MGC103390; Thym
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm15466   Gm19314   Gm4617   LOC118568052   Ptma-ps1   Ptma-ps2  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39186,454,442 - 86,458,434 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl186,454,448 - 86,458,434 (+)EnsemblGRCm39 Ensembl
GRCm38186,526,557 - 86,530,712 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl186,526,726 - 86,530,712 (+)EnsemblGRCm38mm10GRCm38
MGSCv37188,423,311 - 88,427,273 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36188,357,907 - 88,361,869 (+)NCBIMGSCv36mm8
Celera189,496,434 - 89,500,314 (+)NCBICelera
Cytogenetic Map1C5NCBI
cM Map143.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
3',5'-cyclic AMP  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP)
benzo[b]fluoranthene  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bromobenzene  (ISO)
buspirone  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chloroform  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
chromium(6+)  (EXP)
chrysene  (EXP)
cisplatin  (EXP)
clofibric acid  (ISO)
clozapine  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (EXP)
disulfiram  (ISO)
diuron  (ISO)
doxorubicin  (ISO)
ethanol  (EXP,ISO)
fipronil  (ISO)
folic acid  (EXP)
FR900359  (ISO)
fructose  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
glutathione  (EXP,ISO)
haloperidol  (ISO)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
inulin  (EXP)
ivermectin  (ISO)
L-methionine  (EXP)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
methimazole  (ISO)
methotrexate  (ISO)
N-nitrosodiethylamine  (ISO)
naloxone  (ISO)
nickel sulfate  (ISO)
O-acetyl-L-carnitine  (ISO)
ochratoxin A  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
pirinixic acid  (ISO)
quinidine  (ISO)
rac-lactic acid  (ISO)
reactive oxygen species  (EXP,ISO)
resveratrol  (EXP)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sulfadimethoxine  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (ISO)
tetracycline  (ISO)
tetraphene  (EXP)
theophylline  (ISO)
thioacetamide  (ISO)
triadimefon  (ISO)
Tributyltin oxide  (EXP)
trichloroethene  (ISO)
triptonide  (EXP)
trovafloxacin  (ISO)
tubocurarine  (ISO)
uranium atom  (ISO)
ursodeoxycholic acid  (ISO)
valproic acid  (ISO)
vandetanib  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1378271   PMID:1989881   PMID:2015308   PMID:2226839   PMID:2479575   PMID:7851522   PMID:8603532   PMID:8866647   PMID:9099694   PMID:9110315   PMID:10349636   PMID:11042159  
PMID:11076861   PMID:12036599   PMID:12163409   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:14691545   PMID:14982877   PMID:15234001   PMID:15489334   PMID:15582152  
PMID:15735755   PMID:15782199   PMID:15840017   PMID:16107646   PMID:16141072   PMID:16141073   PMID:16602821   PMID:18391415   PMID:18989338   PMID:20059953   PMID:20434447   PMID:21426658  
PMID:21750924   PMID:21873635   PMID:22853710   PMID:23695700   PMID:24194600   PMID:27310139   PMID:27626380   PMID:28122138   PMID:29382714   PMID:30595499   PMID:30713523   PMID:31162944  
PMID:31589480   PMID:31759625   PMID:32325033   PMID:32817121   PMID:32909608   PMID:36114006   PMID:36766838  


Genomics

Comparative Map Data
Ptma
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39186,454,442 - 86,458,434 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl186,454,448 - 86,458,434 (+)EnsemblGRCm39 Ensembl
GRCm38186,526,557 - 86,530,712 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl186,526,726 - 86,530,712 (+)EnsemblGRCm38mm10GRCm38
MGSCv37188,423,311 - 88,427,273 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36188,357,907 - 88,361,869 (+)NCBIMGSCv36mm8
Celera189,496,434 - 89,500,314 (+)NCBICelera
Cytogenetic Map1C5NCBI
cM Map143.96NCBI
PTMA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382231,708,525 - 231,713,551 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2231,706,895 - 231,713,551 (+)EnsemblGRCh38hg38GRCh38
GRCh372232,573,235 - 232,578,261 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362232,281,479 - 232,286,495 (+)NCBINCBI36Build 36hg18NCBI36
Build 342232,398,740 - 232,403,754NCBI
Celera2226,349,751 - 226,354,767 (+)NCBICelera
Cytogenetic Map2q37.1NCBI
HuRef2224,415,419 - 224,421,126 (+)NCBIHuRef
CHM1_12232,579,058 - 232,584,074 (+)NCBICHM1_1
T2T-CHM13v2.02232,193,095 - 232,198,121 (+)NCBIT2T-CHM13v2.0
Ptma
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8994,624,194 - 94,628,276 (+)NCBIGRCr8
mRatBN7.2987,176,251 - 87,180,333 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl987,176,230 - 87,180,333 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx995,593,165 - 95,597,249 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09100,722,287 - 100,726,371 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0999,104,565 - 99,108,647 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0993,545,396 - 93,549,436 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl993,545,396 - 93,549,436 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0993,273,333 - 93,277,373 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4985,291,203 - 85,295,242 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1985,474,621 - 85,478,661 (+)NCBI
Celera984,591,345 - 84,595,385 (+)NCBICelera
Cytogenetic Map9q35NCBI
Ptma
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554534,036,503 - 4,037,788 (-)NCBIChiLan1.0ChiLan1.0
PTMA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213134,329,362 - 134,335,272 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B134,344,327 - 134,350,223 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B118,959,382 - 118,964,364 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B237,746,118 - 237,750,806 (+)NCBIpanpan1.1PanPan1.1panPan2
PTMA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12543,563,145 - 43,567,987 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2543,562,395 - 43,675,699 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2544,056,313 - 44,061,150 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02543,818,611 - 43,823,463 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2543,817,860 - 43,823,463 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12543,746,908 - 43,751,731 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02543,590,250 - 43,595,085 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02543,745,404 - 43,750,240 (+)NCBIUU_Cfam_GSD_1.0
Ptma
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303185,679,168 - 185,685,998 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365255,253,723 - 5,258,300 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTMA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15132,355,655 - 132,361,435 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115132,353,763 - 132,361,442 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PTMA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110117,721,097 - 117,722,065 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604081,712,038 - 81,716,974 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptma
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248434,728,963 - 4,732,839 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248434,728,963 - 4,732,659 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ptma
113 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:183
Count of miRNA genes:155
Interacting mature miRNAs:158
Transcripts:ENSMUST00000045897
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
1300821Lore1_mloss of righting induced by ethanol 1 (mouse)Not determined17554919192941077Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)175976637128527737Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177123115110536075Mouse
14697706Stsl3a_mSalmonella typhimurium susceptibility locus 3a (mouse)17747663795827725Mouse
14696691Malq1_mmean attack latency QTL 1 (mouse)17797663787927722Mouse
14696693Avd2q1_mattack value day 2 QTL 1 (mouse)17897771790927722Mouse
4141725Wbcq4_mwhite blood cell quantitative locus 4 (mouse)Not determined179858683113858791Mouse
12050069Nabq1_mnasal bone morphology QTL 1 (mouse)179858683113858791Mouse
13452395Leusq2_mleucocytosis susceptibility QTL 2 (mouse)180245593126386517Mouse
1302029Sst1_msusceptibility to tuberculosis 1 (mouse)Not determined18165211487130822Mouse
14696692Tavq1_mtotal attack value QTL 1 (mouse)18197771588427722Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
10412238Alpq5_malcohol preference QTL 5 (mouse)Not determined182832635116832635Mouse
12791004Aath7_maortic arch atherosclerosis 7 (mouse)182832635116832635Mouse
25394564Skmw49_mskeletal muscle weight 49, TA (mouse)18342011988552630Mouse
25394563Skmw48_mskeletal muscle weight 48, EDL (mouse)18547800687323158Mouse
11667074Led2_mlate embryonic death 2 (mouse)185696027117195081Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001360830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_153833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_153834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC158132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC081453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN717467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X56135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000045897   ⟹   ENSMUSP00000044188
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,454,448 - 86,458,434 (+)Ensembl
GRCm38.p6 Ensembl186,526,726 - 86,530,712 (+)Ensembl
RefSeq Acc Id: ENSMUST00000186255   ⟹   ENSMUSP00000139690
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,454,458 - 86,458,093 (+)Ensembl
GRCm38.p6 Ensembl186,526,736 - 86,530,371 (+)Ensembl
RefSeq Acc Id: ENSMUST00000186932
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,454,463 - 86,457,467 (+)Ensembl
GRCm38.p6 Ensembl186,526,741 - 86,529,745 (+)Ensembl
RefSeq Acc Id: ENSMUST00000188533   ⟹   ENSMUSP00000139849
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,454,529 - 86,457,931 (+)Ensembl
GRCm38.p6 Ensembl186,526,807 - 86,530,209 (+)Ensembl
RefSeq Acc Id: ENSMUST00000188699   ⟹   ENSMUSP00000140270
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,454,459 - 86,457,249 (+)Ensembl
GRCm38.p6 Ensembl186,526,737 - 86,529,527 (+)Ensembl
RefSeq Acc Id: NM_001360830   ⟹   NP_001347759
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,454,442 - 86,458,434 (+)NCBI
GRCm38186,526,557 - 86,530,712 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001360831   ⟹   NP_001347760
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,454,442 - 86,458,434 (+)NCBI
GRCm38186,526,557 - 86,530,712 (+)NCBI
Sequence:
RefSeq Acc Id: NM_008972   ⟹   NP_032998
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,454,442 - 86,458,434 (+)NCBI
GRCm38186,526,557 - 86,530,712 (+)NCBI
MGSCv37188,423,311 - 88,427,273 (+)RGD
Celera189,496,434 - 89,500,314 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_153833
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,454,442 - 86,458,434 (+)NCBI
GRCm38186,526,557 - 86,530,712 (+)NCBI
Sequence:
RefSeq Acc Id: NR_153834
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,454,442 - 86,458,434 (+)NCBI
GRCm38186,526,557 - 86,530,712 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001347759 (Get FASTA)   NCBI Sequence Viewer  
  NP_001347760 (Get FASTA)   NCBI Sequence Viewer  
  NP_032998 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH81453 (Get FASTA)   NCBI Sequence Viewer  
  AAH83135 (Get FASTA)   NCBI Sequence Viewer  
  AAH85171 (Get FASTA)   NCBI Sequence Viewer  
  BAC29913 (Get FASTA)   NCBI Sequence Viewer  
  BAC39141 (Get FASTA)   NCBI Sequence Viewer  
  BAC40090 (Get FASTA)   NCBI Sequence Viewer  
  BAE20932 (Get FASTA)   NCBI Sequence Viewer  
  BAE24932 (Get FASTA)   NCBI Sequence Viewer  
  BAE25445 (Get FASTA)   NCBI Sequence Viewer  
  BAE26566 (Get FASTA)   NCBI Sequence Viewer  
  BAE27185 (Get FASTA)   NCBI Sequence Viewer  
  BAE27331 (Get FASTA)   NCBI Sequence Viewer  
  BAE27480 (Get FASTA)   NCBI Sequence Viewer  
  BAE30274 (Get FASTA)   NCBI Sequence Viewer  
  BAE30461 (Get FASTA)   NCBI Sequence Viewer  
  BAE30674 (Get FASTA)   NCBI Sequence Viewer  
  BAE30891 (Get FASTA)   NCBI Sequence Viewer  
  BAE31781 (Get FASTA)   NCBI Sequence Viewer  
  BAE32043 (Get FASTA)   NCBI Sequence Viewer  
  BAE32276 (Get FASTA)   NCBI Sequence Viewer  
  BAE34842 (Get FASTA)   NCBI Sequence Viewer  
  CAA39601 (Get FASTA)   NCBI Sequence Viewer  
  EDL40209 (Get FASTA)   NCBI Sequence Viewer  
  EDL40210 (Get FASTA)   NCBI Sequence Viewer  
  EDL40211 (Get FASTA)   NCBI Sequence Viewer  
  EDL40212 (Get FASTA)   NCBI Sequence Viewer  
  EDL40213 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000044188
  ENSMUSP00000044188.9
  ENSMUSP00000139690.2
  ENSMUSP00000139849.2
  ENSMUSP00000140270.2
GenBank Protein P26350 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_032998   ⟸   NM_008972
- Peptide Label: isoform 1
- UniProtKB: Q3UQV6 (UniProtKB/Swiss-Prot),   P26350 (UniProtKB/Swiss-Prot),   Q0VGU2 (UniProtKB/TrEMBL),   Q3U6E4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001347759   ⟸   NM_001360830
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001347760   ⟸   NM_001360831
- Peptide Label: isoform 3
RefSeq Acc Id: ENSMUSP00000044188   ⟸   ENSMUST00000045897
RefSeq Acc Id: ENSMUSP00000139690   ⟸   ENSMUST00000186255
RefSeq Acc Id: ENSMUSP00000139849   ⟸   ENSMUST00000188533
RefSeq Acc Id: ENSMUSP00000140270   ⟸   ENSMUST00000188699

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P26350-F1-model_v2 AlphaFold P26350 1-111 view protein structure

Promoters
RGD ID:6874332
Promoter ID:EPDNEW_M617
Type:multiple initiation site
Name:Ptma_1
Description:Mus musculus prothymosin alpha , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38186,526,721 - 86,526,781EPDNEW
RGD ID:6818319
Promoter ID:MM_KWN:1481
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_008972
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36188,422,321 - 88,423,687 (+)MPROMDB
RGD ID:6848555
Promoter ID:MM_TRO:324
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:MTR002706.1.1347.7,   MTR002706.1.1347.8,   MTR002706.1.1347.9
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36188,424,436 - 88,426,367 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97803 AgrOrtholog
Ensembl Genes ENSMUSG00000026238 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000045897 ENTREZGENE
  ENSMUST00000045897.15 UniProtKB/Swiss-Prot
  ENSMUST00000186255.7 UniProtKB/TrEMBL
  ENSMUST00000188533.2 UniProtKB/TrEMBL
  ENSMUST00000188699.7 UniProtKB/TrEMBL
InterPro Pro/parathymosin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19231 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:97803 ENTREZGENE
NCBI Gene 19231 ENTREZGENE
PANTHER PROTHYMOSIN ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR22745 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Prothymosin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ptma PhenoGen
UniProt A0A087WP98_MOUSE UniProtKB/TrEMBL
  A0A087WPN6_MOUSE UniProtKB/TrEMBL
  A0A087WQN2_MOUSE UniProtKB/TrEMBL
  P26350 ENTREZGENE, UniProtKB/Swiss-Prot
  Q0VGU2 ENTREZGENE, UniProtKB/TrEMBL
  Q3U6E4 ENTREZGENE, UniProtKB/TrEMBL
  Q3U8X6_MOUSE UniProtKB/TrEMBL
  Q3UA54_MOUSE UniProtKB/TrEMBL
  Q3UQV6 ENTREZGENE
  Q8C2T3_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3UQV6 UniProtKB/Swiss-Prot