Kcnab1 (potassium voltage-gated channel, shaker-related subfamily, beta member 1) - Rat Genome Database

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Gene: Kcnab1 (potassium voltage-gated channel, shaker-related subfamily, beta member 1) Mus musculus
Analyze
Symbol: Kcnab1
Name: potassium voltage-gated channel, shaker-related subfamily, beta member 1
RGD ID: 62118
MGI Page MGI
Description: Predicted to enable several functions, including NADPH binding activity; potassium channel regulator activity; and transmembrane transporter binding activity. Acts upstream of or within learning or memory. Predicted to be located in several cellular components, including cytoplasmic side of plasma membrane; dendrite; and perikaryon. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in juxtaparanode region of axon. Is expressed in brain; heart; reproductive system; and urinary system. Human ortholog(s) of this gene implicated in temporal lobe epilepsy. Orthologous to human KCNAB1 (potassium voltage-gated channel subfamily A regulatory beta subunit 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Akr; Akr8a8; K(+) channel subunit beta-1; kv-beta-1; Kvbeta1; Kvbeta1.1; mKv(beta; mKv(beta)1; potassium voltage gated channel, shaker related subfamily, beta member 1; voltage dependent potassium channel subunit beta-1; voltage-gated potassium channel subunit beta-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39364,856,636 - 65,285,643 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl364,856,617 - 65,285,644 (+)EnsemblGRCm39 Ensembl
GRCm38364,949,212 - 65,378,225 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl364,949,196 - 65,378,223 (+)EnsemblGRCm38mm10GRCm38
MGSCv37364,913,565 - 65,182,141 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36365,197,313 - 65,466,148 (+)NCBIMGSCv36mm8
Celera365,250,341 - 65,520,213 (+)NCBICelera
Cytogenetic Map3E1NCBI
cM Map330.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-vinylcyclohexene dioxide  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
amitrole  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
CGP 52608  (ISO)
choline  (EXP)
cisplatin  (ISO)
cobalt dichloride  (EXP)
cocaine  (EXP,ISO)
Cuprizon  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
dioxygen  (EXP,ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
fenvalerate  (ISO)
flutamide  (ISO)
folic acid  (EXP)
fulvestrant  (ISO)
genistein  (EXP)
gentamycin  (ISO)
haloperidol  (EXP)
L-methionine  (EXP)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
mercury dichloride  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methoxychlor  (EXP)
methylseleninic acid  (ISO)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
olanzapine  (EXP)
oxaliplatin  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP)
testosterone  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
zinc protoporphyrin  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Association of intronic variants of the KCNAB1 gene with lateral temporal epilepsy. Busolin G, etal., Epilepsy Res. 2011 Mar;94(1-2):110-6. doi: 10.1016/j.eplepsyres.2011.01.010. Epub 2011 Feb 18.
2. Differential expression of voltage-gated K(+) channel genes in arteries from spontaneously hypertensive and Wistar-Kyoto rats. Cox RH, etal., Hypertension. 2001 May;37(5):1315-22.
3. Comparative gene expression profile of mouse carotid body and adrenal medulla under physiological hypoxia. Ganfornina MD, etal., J Physiol. 2005 Jul 15;566(Pt 2):491-503. Epub 2005 May 12.
4. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
5. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. MGD IEA MGD IEA
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Voltage-gated K+ channel beta subunits: expression and distribution of Kv beta 1 and Kv beta 2 in adult rat brain. Rhodes KJ, etal., J Neurosci. 1996 Aug 15;16(16):4846-60.
Additional References at PubMed
PMID:8824288   PMID:9468385   PMID:9501317   PMID:10349636   PMID:10454353   PMID:10536234   PMID:10767319   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14511342   PMID:15530391  
PMID:15662035   PMID:15720404   PMID:15944564   PMID:16141072   PMID:16141073   PMID:16985003   PMID:18287559   PMID:18614564   PMID:19780818   PMID:20510229   PMID:21862448   PMID:21873635  
PMID:22794259   PMID:24952961   PMID:25707359   PMID:25979088   PMID:27507650   PMID:27574914   PMID:27986658   PMID:28671696   PMID:32325033   PMID:33499656   PMID:34368133   PMID:36417873  
PMID:36604605  


Genomics

Comparative Map Data
Kcnab1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39364,856,636 - 65,285,643 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl364,856,617 - 65,285,644 (+)EnsemblGRCm39 Ensembl
GRCm38364,949,212 - 65,378,225 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl364,949,196 - 65,378,223 (+)EnsemblGRCm38mm10GRCm38
MGSCv37364,913,565 - 65,182,141 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36365,197,313 - 65,466,148 (+)NCBIMGSCv36mm8
Celera365,250,341 - 65,520,213 (+)NCBICelera
Cytogenetic Map3E1NCBI
cM Map330.15NCBI
KCNAB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383156,118,211 - 156,539,138 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3156,037,701 - 156,538,756 (+)EnsemblGRCh38hg38GRCh38
GRCh373155,838,337 - 156,256,927 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363157,321,031 - 157,739,621 (+)NCBINCBI36Build 36hg18NCBI36
Celera3154,260,612 - 154,680,263 (+)NCBICelera
Cytogenetic Map3q25.31NCBI
HuRef3153,234,046 - 153,652,872 (+)NCBIHuRef
CHM1_13155,801,446 - 156,218,577 (+)NCBICHM1_1
T2T-CHM13v2.03158,892,837 - 159,313,792 (+)NCBIT2T-CHM13v2.0
Kcnab1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82151,446,975 - 151,913,636 (+)NCBIGRCr8
mRatBN7.22149,137,025 - 149,603,540 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2149,137,041 - 149,603,534 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2156,426,340 - 156,713,448 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02154,475,802 - 154,764,811 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02149,108,477 - 149,397,485 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02155,555,798 - 156,011,438 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2155,718,359 - 156,009,526 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02174,966,379 - 175,400,010 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42154,837,841 - 155,145,882 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12154,787,803 - 155,095,845 (+)NCBI
Celera2143,747,424 - 144,023,440 (+)NCBICelera
Cytogenetic Map2q31NCBI
Kcnab1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554487,309,717 - 7,551,432 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554487,145,471 - 7,553,090 (+)NCBIChiLan1.0ChiLan1.0
KCNAB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22154,037,335 - 154,456,298 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13154,042,066 - 154,461,029 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03153,175,465 - 153,594,375 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13161,251,899 - 161,652,520 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3161,402,134 - 161,651,524 (+)Ensemblpanpan1.1panPan2
KCNAB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12349,775,790 - 50,135,372 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2349,776,089 - 50,133,707 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2349,650,372 - 50,009,284 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02350,409,624 - 50,768,980 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2350,409,741 - 50,767,309 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12349,994,486 - 50,352,950 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02350,044,700 - 50,403,869 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02350,331,182 - 50,690,531 (+)NCBIUU_Cfam_GSD_1.0
Kcnab1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560286,180,048 - 86,493,647 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365193,354,987 - 3,553,181 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365193,354,001 - 3,553,904 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNAB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1395,959,378 - 96,375,856 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11395,981,820 - 96,375,089 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213104,321,510 - 104,480,018 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KCNAB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11534,223,250 - 34,467,924 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1534,221,890 - 34,468,001 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660416,840,145 - 7,225,966 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kcnab1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473033,876,381 - 34,139,594 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473033,701,386 - 34,141,269 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kcnab1
14914 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1373
Count of miRNA genes:554
Interacting mature miRNAs:646
Transcripts:ENSMUST00000049230, ENSMUST00000159525, ENSMUST00000160136, ENSMUST00000161404, ENSMUST00000161956, ENSMUST00000161979
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3758617468716946Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1300961Bh4p_mbar holding four paws (mouse)Not determined33183785465837997Mouse
10412073Ssen2_msuseptibility to Sendai virus 2 (mouse)Not determined33353546567535615Mouse
9587784Afw13_mabdominal fat weight QTL 13 (mouse)Not determined33375204567752228Mouse
10043882Bwtq13_mbody weight QTL 13 (mouse)Not determined33375204567752228Mouse
15039332Nmrs6_mNAFLD-associated magnetic resonance shift 6 (mouse)33417074168170741Mouse
15039336Nmrs2_mNAFLD-associated magnetic resonance shift 2 (mouse)33457610368576103Mouse
18337272Bmd46_mbone mineral density 46, males (mouse)33540742169407421Mouse
14746977Manh53_mmandible shape 53 (mouse)33592528069925280Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
1300587Aod2_mautoimmune ovarian dysgenesis 2 (mouse)Not determined33717974268716946Mouse
11041901Lmr11b_mleishmaniasis resistance 11b (mouse)33970410273704231Mouse
11039513Ltpr3a_mLeishmania tropica response 3a (mouse)33970410273704231Mouse
1301585Cd4ts1_mCD4 T cell subset 1 (mouse)Not determined33970410273704231Mouse
10755516Amzn1_manatomical modifier of Zfp423 1 (mouse)33970410273704231Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884389Skwq10_mskull length QTL 10, 16 week (mouse)34395443565307421Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
4141079Ath23_matherosclerosis 23 (mouse)Not determined4935758183357581Mouse
1300895Hdl5_mHDL level 5 (mouse)Not determined34949500583495118Mouse
1301824Susp_msuppressor of superoxide production (mouse)Not determined34949500583495118Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
1357585Manln3_mmandible length 3 (mouse)Not determined35262550986625745Mouse
1301917Tshp4_mtooth shape 4 (mouse)Not determined35262550986625745Mouse
1300593Skull4_mskull morphology 4 (mouse)Not determined35262550986625745Mouse
13464139Nhdlq17_mnon-HDL QTL 17 (mouse)35292318386923183Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse

Markers in Region
35.MMHAP59FLD5.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38365,329,721 - 65,329,871UniSTSGRCm38
MGSCv37365,133,643 - 65,133,793UniSTSGRCm37
Celera365,471,731 - 65,471,881UniSTS
Cytogenetic Map3E1UniSTS
cM Map332.0UniSTS
Whitehead_YAC3 UniSTS
X97281  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38365,376,803 - 65,376,993UniSTSGRCm38
MGSCv37365,180,725 - 65,180,915UniSTSGRCm37
Celera365,518,797 - 65,518,987UniSTS
Cytogenetic Map3E1UniSTS
cM Map332.0UniSTS
Whitehead_YAC3 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001289450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001403872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC113458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC119855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC134550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF033003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB869931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY515823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC437679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC437680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U65591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X97281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000049230   ⟹   ENSMUSP00000047480
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl365,016,805 - 65,285,640 (+)Ensembl
GRCm38.p6 Ensembl365,109,384 - 65,378,219 (+)Ensembl
RefSeq Acc Id: ENSMUST00000159525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl365,016,805 - 65,273,209 (+)Ensembl
GRCm38.p6 Ensembl365,109,384 - 65,365,788 (+)Ensembl
RefSeq Acc Id: ENSMUST00000160136
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl365,204,835 - 65,264,506 (+)Ensembl
GRCm38.p6 Ensembl365,297,414 - 65,357,085 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161404
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl365,095,524 - 65,285,644 (+)Ensembl
GRCm38.p6 Ensembl365,188,103 - 65,378,223 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161956
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl365,261,188 - 65,266,241 (+)Ensembl
GRCm38.p6 Ensembl365,353,767 - 65,358,820 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161979
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl365,160,849 - 65,284,505 (+)Ensembl
GRCm38.p6 Ensembl365,253,428 - 65,377,084 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193778
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl364,856,644 - 65,131,122 (+)Ensembl
GRCm38.p6 Ensembl364,949,223 - 65,223,701 (+)Ensembl
RefSeq Acc Id: ENSMUST00000238901   ⟹   ENSMUSP00000159000
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl364,856,617 - 65,284,301 (+)Ensembl
GRCm38.p6 Ensembl364,949,196 - 65,376,880 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239069   ⟹   ENSMUSP00000158882
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl364,884,839 - 65,284,301 (+)Ensembl
GRCm38.p6 Ensembl364,977,418 - 65,376,880 (+)Ensembl
RefSeq Acc Id: NM_001289450   ⟹   NP_001276379
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39365,095,539 - 65,285,640 (+)NCBI
GRCm38365,188,103 - 65,378,225 (+)NCBI
Celera365,250,066 - 65,520,219 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357358   ⟹   NP_001344287
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39364,856,636 - 65,285,640 (+)NCBI
GRCm38364,949,212 - 65,378,225 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001403872   ⟹   NP_001390801
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39365,016,453 - 65,273,215 (+)NCBI
RefSeq Acc Id: NM_010597   ⟹   NP_034727
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39365,016,453 - 65,285,640 (+)NCBI
GRCm38365,109,014 - 65,378,225 (+)NCBI
MGSCv37364,913,565 - 65,182,141 (+)RGD
Celera365,250,066 - 65,520,219 (+)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006501057   ⟹   XP_006501120
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39364,884,766 - 65,285,643 (+)NCBI
GRCm38364,977,345 - 65,378,222 (+)NCBI
Sequence:
RefSeq Acc Id: NP_034727   ⟸   NM_010597
- Peptide Label: isoform 1
- UniProtKB: Q63277 (UniProtKB/Swiss-Prot),   Q61763 (UniProtKB/Swiss-Prot),   P97380 (UniProtKB/Swiss-Prot),   Q91WM5 (UniProtKB/Swiss-Prot),   P63143 (UniProtKB/Swiss-Prot),   Q9D5E9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006501120   ⟸   XM_006501057
- Peptide Label: isoform X1
- UniProtKB: A0A5F8MPA4 (UniProtKB/TrEMBL),   Q9D5E9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001276379   ⟸   NM_001289450
- Peptide Label: isoform 2
- UniProtKB: Q3U6C5 (UniProtKB/TrEMBL),   Q9D5E9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001344287   ⟸   NM_001357358
- Peptide Label: isoform 3
- UniProtKB: A0A5F8MPK0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000047480   ⟸   ENSMUST00000049230
RefSeq Acc Id: ENSMUSP00000158882   ⟸   ENSMUST00000239069
RefSeq Acc Id: ENSMUSP00000159000   ⟸   ENSMUST00000238901
RefSeq Acc Id: NP_001390801   ⟸   NM_001403872
- Peptide Label: isoform 4
- UniProtKB: Q8CD65 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P63143-F1-model_v2 AlphaFold P63143 1-401 view protein structure

Promoters
RGD ID:6833990
Promoter ID:MM_KWN:34501
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   MEF_B6
Transcripts:ENSMUST00000049230
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36364,913,011 - 64,913,511 (+)MPROMDB
RGD ID:6880798
Promoter ID:EPDNEW_M3850
Type:initiation region
Name:Kcnab1_1
Description:Mus musculus potassium voltage-gated channel, shaker-relatedsubfamily, beta member 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3851  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38365,109,385 - 65,109,445EPDNEW
RGD ID:6880800
Promoter ID:EPDNEW_M3851
Type:multiple initiation site
Name:Kcnab1_2
Description:Mus musculus potassium voltage-gated channel, shaker-relatedsubfamily, beta member 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3850  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38365,188,122 - 65,188,182EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109155 AgrOrtholog
Ensembl Genes ENSMUSG00000027827 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000049230 ENTREZGENE
  ENSMUST00000049230.11 UniProtKB/Swiss-Prot
  ENSMUST00000159525 ENTREZGENE
  ENSMUST00000161404 ENTREZGENE
  ENSMUST00000238901 ENTREZGENE
  ENSMUST00000238901.2 UniProtKB/TrEMBL
  ENSMUST00000239069 ENTREZGENE
  ENSMUST00000239069.2 UniProtKB/TrEMBL
Gene3D-CATH 3.20.20.100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro K_chnl_volt-dep_bsu_KCNAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  K_chnl_volt-dep_bsu_KCNAB-rel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  K_chnl_volt-dep_bsu_KCNAB1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NADP_OxRdtase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NADP_OxRdtase_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:16497 UniProtKB/Swiss-Prot
MGD MGI:109155 ENTREZGENE
NCBI Gene 16497 ENTREZGENE
PANTHER PTHR43150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VOLTAGE-GATED POTASSIUM CHANNEL SUBUNIT BETA-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Aldo_ket_red UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kcnab1 PhenoGen
PRINTS KCNAB1CHANEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KCNABCHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF51430 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A5F8MPA4 ENTREZGENE, UniProtKB/TrEMBL
  A0A5F8MPK0 ENTREZGENE, UniProtKB/TrEMBL
  KCAB1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  P97380 ENTREZGENE
  Q3U6C5 ENTREZGENE, UniProtKB/TrEMBL
  Q61763 ENTREZGENE
  Q63277 ENTREZGENE
  Q8CD65 ENTREZGENE, UniProtKB/TrEMBL
  Q91WM5 ENTREZGENE
  Q9D5E9 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary P97380 UniProtKB/Swiss-Prot
  Q61763 UniProtKB/Swiss-Prot
  Q63277 UniProtKB/Swiss-Prot
  Q91WM5 UniProtKB/Swiss-Prot