Uchl3-ps1 (ubiquitin C-terminal hydrolase L3, pseudogene 1) - Rat Genome Database

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Gene: Uchl3-ps1 (ubiquitin C-terminal hydrolase L3, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Uchl3-ps1
Name: ubiquitin C-terminal hydrolase L3, pseudogene 1
RGD ID: 621131
Description: INTERACTS WITH (+)-schisandrin B; ammonium chloride; finasteride
Type: pseudo
RefSeq Status: INFERRED
Previously known as: ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase); ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase), pseudogene 1; ubiquitin carboxyl-terminal esterase L3, pseudogene 1; Uchl3
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Uchl3  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83182,275,286 - 182,276,167 (-)NCBIGRCr8
mRatBN7.23161,856,954 - 161,857,835 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx3165,660,929 - 165,661,810 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03174,159,879 - 174,160,760 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03171,901,701 - 171,902,582 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03171,092,806 - 171,134,704 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03177,158,975 - 177,200,873 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43163,941,240 - 163,942,122 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11585,644,346 - 85,686,130 (+)NCBI
Celera3161,050,235 - 161,051,116 (-)NCBICelera
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. Cloning, expression, and mapping of a mouse gene, Uchl4, highly homologous to human and mouse Uchl3. Osawa Y, etal., Biochem Biophys Res Commun 2001 May 11;283(3):627-33.
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141339013162184794Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3145925360166177555Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3145925360166177555Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3145925360166177555Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3145925360166177555Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3145925360166177555Rat
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3145925360166177555Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145925360166177555Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3161192952169034231Rat

Markers in Region
Uchl4  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.43163,941,308 - 163,942,074UniSTSRGSC3.4
Celera3161,050,303 - 161,051,069UniSTS
Cytogenetic Map3q42UniSTS
Cytogenetic Map15q21UniSTS
BM390056  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21578,494,992 - 78,495,193 (-)MAPPERmRatBN7.2
mRatBN7.21578,494,992 - 78,495,193 (+)MAPPERmRatBN7.2
Rnor_6.01586,163,284 - 86,163,484NCBIRnor6.0
Rnor_6.03171,124,878 - 171,125,078NCBIRnor6.0
Rnor_5.03177,191,047 - 177,191,247UniSTSRnor5.0
Rnor_5.01589,929,384 - 89,929,584UniSTSRnor5.0
RGSC_v3.41585,638,146 - 85,638,346UniSTSRGSC3.4
Celera1577,686,426 - 77,686,626UniSTS
RH 3.4 Map15503.1UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map3q42UniSTS
PMC85452P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.43163,941,362 - 163,942,072UniSTSRGSC3.4
Celera3161,050,357 - 161,051,067UniSTS
Cytogenetic Map3q42UniSTS
Cytogenetic Map15q21UniSTS


Expression


Sequence


RefSeq Acc Id: XR_591900
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03171,092,806 - 171,134,714 (-)NCBI
Protein Sequences
GenBank Protein EDL85124 (Get FASTA)   NCBI Sequence Viewer  

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-46518 BioCyc
Ensembl Genes ENSRNOG00000065893 ENTREZGENE
NCBI Gene 114094 ENTREZGENE
PhenoGen Uchl3-ps1 PhenoGen
RatGTEx ENSRNOG00000065893 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-16 Uchl3-ps1  ubiquitin C-terminal hydrolase L3, pseudogene 1  Uchl3-ps1  ubiquitin carboxyl-terminal esterase L3, pseudogene 1  Name changed 629549 APPROVED
2010-02-25 Uchl3-ps1  ubiquitin carboxyl-terminal esterase L3, pseudogene 1  Uchl3-ps1  ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase), pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-02 Uchl3-ps1  ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase), pseudogene 1  Uchl3  ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-07-08 Uchl3  ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)  LOC679036  similar to Ubiquitin carboxyl-terminal hydrolase isozyme L3 (UCH-L3) (Ubiquitin thioesterase L3)  Data merged from RGD:1593088 1643240 APPROVED
2006-11-20 LOC679036  similar to Ubiquitin carboxyl-terminal hydrolase isozyme L3 (UCH-L3) (Ubiquitin thioesterase L3)      Symbol and Name status set to provisional 70820 PROVISIONAL
2004-09-10 Uchl3  ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Uchl3  ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)      Symbol and Name status set to provisional 70820 PROVISIONAL