Slc20a1 (solute carrier family 20 member 1) - Rat Genome Database

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Gene: Slc20a1 (solute carrier family 20 member 1) Rattus norvegicus
Analyze
Symbol: Slc20a1
Name: solute carrier family 20 member 1
RGD ID: 621079
Description: Enables high-affinity inorganic phosphate:sodium symporter activity. Involved in phosphate ion transport and sodium ion transport. Located in membrane. Orthologous to human SLC20A1 (solute carrier family 20 member 1); PARTICIPATES IN phosphate transport pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: phosphate transporter 1; PiT-1; RPHO-1; sodium-dependent phosphate transporter 1; solute carrier family 20 (phosphate transporter), member 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23116,427,095 - 116,441,049 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3116,427,098 - 116,441,051 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3120,325,025 - 120,337,944 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.03128,920,621 - 128,933,540 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.03126,581,101 - 126,594,020 (+)NCBIRnor_WKY
Rnor_6.03121,725,204 - 121,739,160 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3121,725,859 - 121,739,173 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03128,276,532 - 128,292,024 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43116,813,990 - 116,828,049 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13116,719,562 - 116,733,622 (+)NCBI
Celera3115,254,201 - 115,267,277 (+)NCBICelera
Cytogenetic Map3q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-butoxyethanol  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
adenine  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
azathioprine  (ISO)
azoxystrobin  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
beta-naphthoflavone  (EXP,ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
butan-1-ol  (ISO)
caffeine  (ISO)
calcitriol  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (EXP)
choline  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
flavonoids  (ISO)
fluoranthene  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
fumonisin B1  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
hydrogen peroxide  (ISO)
hypochlorous acid  (ISO)
imidacloprid  (EXP)
indole-3-methanol  (EXP)
indometacin  (ISO)
L-methionine  (ISO)
leflunomide  (EXP,ISO)
linalool  (EXP)
lipopolysaccharide  (EXP,ISO)
lithium atom  (ISO)
lithium chloride  (ISO)
lithium hydride  (ISO)
menadione  (ISO)
mercury dichloride  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (EXP)
N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine  (EXP)
nefazodone  (EXP)
nickel atom  (ISO)
oxaliplatin  (EXP)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
parathion  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenethyl isothiocyanate  (ISO)
phenobarbital  (ISO)
phosphonoformic acid  (EXP,ISO)
pirinixic acid  (ISO)
potassium atom  (EXP)
progesterone  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
ranitidine  (EXP)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
sarin  (ISO)
SB 203580  (ISO)
sevoflurane  (EXP)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium atom  (ISO)
sodium dichromate  (EXP)
sodium dodecyl sulfate  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thiabendazole  (EXP)
thioacetamide  (EXP)
toluene  (EXP)
topotecan  (EXP)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
zidovudine  (ISO)
zinc atom  (EXP,ISO)
zinc sulfate  (EXP)
zinc(0)  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. Phosphate handling: new genes, new molecules. Prie D, etal., Horm Res Paediatr. 2011;76 Suppl 1:71-5. doi: 10.1159/000329175. Epub 2011 Jul 21.
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Molecular cloning and hormonal regulation of PiT-1, a sodium-dependent phosphate cotransporter from rat parathyroid glands. Tatsumi S, etal., Endocrinology 1998 Apr;139(4):1692-9.
Additional References at PubMed
PMID:12477932   PMID:12606316   PMID:12761501   PMID:14985238   PMID:15564340   PMID:17322102   PMID:17438129   PMID:17565274   PMID:19506901   PMID:19655218   PMID:19806400   PMID:21643723  
PMID:22871113   PMID:26581047   PMID:26782594   PMID:27812542   PMID:28123180  


Genomics

Comparative Map Data
Slc20a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23116,427,095 - 116,441,049 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3116,427,098 - 116,441,051 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3120,325,025 - 120,337,944 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.03128,920,621 - 128,933,540 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.03126,581,101 - 126,594,020 (+)NCBIRnor_WKY
Rnor_6.03121,725,204 - 121,739,160 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3121,725,859 - 121,739,173 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03128,276,532 - 128,292,024 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43116,813,990 - 116,828,049 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13116,719,562 - 116,733,622 (+)NCBI
Celera3115,254,201 - 115,267,277 (+)NCBICelera
Cytogenetic Map3q36NCBI
SLC20A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382112,645,939 - 112,663,825 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2112,645,939 - 112,663,825 (+)EnsemblGRCh38hg38GRCh38
GRCh372113,403,516 - 113,421,402 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362113,119,998 - 113,137,873 (+)NCBINCBI36Build 36hg18NCBI36
Build 342113,119,757 - 113,137,629NCBI
Celera2106,789,056 - 106,806,930 (+)NCBICelera
Cytogenetic Map2q14.1NCBI
HuRef2105,857,945 - 105,875,919 (+)NCBIHuRef
CHM1_12113,407,525 - 113,425,488 (+)NCBICHM1_1
T2T-CHM13v2.02113,072,544 - 113,090,428 (+)NCBIT2T-CHM13v2.0
Slc20a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392129,038,662 - 129,053,535 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2129,040,684 - 129,053,536 (+)EnsemblGRCm39 Ensembl
GRCm382129,198,773 - 129,211,615 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2129,198,764 - 129,211,616 (+)EnsemblGRCm38mm10GRCm38
MGSCv372129,024,509 - 129,037,351 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362128,890,241 - 128,903,050 (+)NCBIMGSCv36mm8
Celera2130,425,457 - 130,438,207 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map262.79NCBI
Slc20a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554701,634,476 - 1,649,234 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554701,634,470 - 1,649,234 (-)NCBIChiLan1.0ChiLan1.0
SLC20A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A113,657,911 - 113,675,914 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A113,657,901 - 113,679,575 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A89,394,161 - 89,412,141 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SLC20A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11736,863,786 - 36,879,331 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1736,863,659 - 36,909,318 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1736,632,435 - 36,648,612 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01737,639,174 - 37,655,399 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1737,639,169 - 37,655,399 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11736,777,137 - 36,793,360 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01736,831,126 - 36,847,341 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01737,044,911 - 37,061,103 (+)NCBIUU_Cfam_GSD_1.0
Slc20a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629282,223,351 - 82,236,707 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367831,117,829 - 1,131,213 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049367831,117,835 - 1,130,739 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC20A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl343,844,722 - 43,860,547 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1343,844,716 - 43,860,547 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC20A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11415,657,888 - 15,676,649 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1415,659,361 - 15,676,645 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660804,005,482 - 4,024,459 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc20a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474912,631,259 - 12,702,867 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc20a1
84 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:80
Interacting mature miRNAs:84
Transcripts:ENSRNOT00000025294
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3112287552135181505Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)3115638168135181505Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)3115638168135181505Rat

Markers in Region
RH128315  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23116,440,469 - 116,440,658 (+)MAPPERmRatBN7.2
Rnor_6.03121,738,581 - 121,738,769NCBIRnor6.0
Rnor_5.03128,276,923 - 128,277,111UniSTSRnor5.0
RGSC_v3.43116,827,481 - 116,827,669UniSTSRGSC3.4
Celera3115,266,709 - 115,266,897UniSTS
RH 3.4 Map3999.6UniSTS
Cytogenetic Map3q36UniSTS
AA963219  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23116,440,709 - 116,440,920 (+)MAPPERmRatBN7.2
Rnor_6.03121,738,821 - 121,739,031NCBIRnor6.0
Rnor_5.03128,276,661 - 128,276,871UniSTSRnor5.0
RGSC_v3.43116,827,721 - 116,827,931UniSTSRGSC3.4
Celera3115,266,949 - 115,267,159UniSTS
RH 3.4 Map31001.1UniSTS
Cytogenetic Map3q36UniSTS
RH138625  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23116,436,742 - 116,436,868 (+)MAPPERmRatBN7.2
Rnor_6.03121,734,854 - 121,734,979NCBIRnor6.0
Rnor_5.03128,280,713 - 128,280,838UniSTSRnor5.0
RGSC_v3.43116,823,754 - 116,823,879UniSTSRGSC3.4
Celera3115,262,982 - 115,263,107UniSTS
RH 3.4 Map31000.2UniSTS
Cytogenetic Map3q36UniSTS
Slc10a1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23116,428,543 - 116,428,971 (+)MAPPERmRatBN7.2
Rnor_6.03121,726,661 - 121,727,088NCBIRnor6.0
Rnor_5.03128,288,604 - 128,289,031UniSTSRnor5.0
RGSC_v3.43116,814,575 - 116,815,002UniSTSRGSC3.4
Celera3115,254,786 - 115,255,213UniSTS
Cytogenetic Map3q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 42 57 41 19 41 4 4 74 35 40 11 4
Low 1 4 7 1 4
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000025294   ⟹   ENSRNOP00000025294
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3116,427,098 - 116,441,051 (+)Ensembl
Rnor_6.0 Ensembl3121,725,859 - 121,739,173 (+)Ensembl
RefSeq Acc Id: NM_031148   ⟹   NP_112410
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23116,427,959 - 116,441,038 (+)NCBI
Rnor_6.03121,726,076 - 121,739,149 (+)NCBI
Rnor_5.03128,276,532 - 128,292,024 (-)NCBI
RGSC_v3.43116,813,990 - 116,828,049 (+)RGD
Celera3115,254,201 - 115,267,277 (+)RGD
Sequence:
RefSeq Acc Id: XM_006234991   ⟹   XP_006235053
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23116,427,098 - 116,441,049 (+)NCBI
Rnor_6.03121,725,205 - 121,739,160 (+)NCBI
Rnor_5.03128,276,532 - 128,292,024 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006234992   ⟹   XP_006235054
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23116,427,095 - 116,434,575 (+)NCBI
Rnor_6.03121,725,204 - 121,731,745 (+)NCBI
Rnor_5.03128,276,532 - 128,292,024 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105927   ⟹   XP_038961855
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23116,428,490 - 116,441,049 (+)NCBI
RefSeq Acc Id: XM_039105928   ⟹   XP_038961856
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23116,433,027 - 116,441,049 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_112410   ⟸   NM_031148
- UniProtKB: Q9JJP0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006235053   ⟸   XM_006234991
- Peptide Label: isoform X1
- UniProtKB: Q9JJP0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006235054   ⟸   XM_006234992
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSRNOP00000025294   ⟸   ENSRNOT00000025294
RefSeq Acc Id: XP_038961855   ⟸   XM_039105927
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038961856   ⟸   XM_039105928
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JJP0-F1-model_v2 AlphaFold Q9JJP0 1-681 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621079 AgrOrtholog
BioCyc Gene G2FUF-47918 BioCyc
Ensembl Genes ENSRNOG00000018567 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000025294 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000025294 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Phos_transporter UniProtKB/Swiss-Prot
KEGG Report rno:81826 UniProtKB/Swiss-Prot
NCBI Gene 81826 ENTREZGENE
PANTHER PTHR11101 UniProtKB/Swiss-Prot
Pfam PHO4 UniProtKB/Swiss-Prot
PhenoGen Slc20a1 PhenoGen
UniProt Q9JJP0 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-25 Slc20a1  solute carrier family 20 member 1  Slc20a1  solute carrier family 20 (phosphate transporter), member 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Slc20a1  solute carrier family 20 (phosphate transporter), member 1      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Slc20a1  solute carrier family 20 (phosphate transporter), member 1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression mainly expressed in brain, bone, and small intestine but lower levels of expression seen in most other tissues 633932