Bard1 (BRCA1 associated RING domain 1) - Rat Genome Database

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Gene: Bard1 (BRCA1 associated RING domain 1) Rattus norvegicus
Analyze
Symbol: Bard1
Name: BRCA1 associated RING domain 1
RGD ID: 621072
Description: Predicted to enable RNA binding activity; protein heterodimerization activity; and protein homodimerization activity. Predicted to contribute to ubiquitin-protein transferase activity. Involved in several processes, including cellular response to follicle-stimulating hormone stimulus; cellular response to testosterone stimulus; and response to aldosterone. Predicted to be located in cytoplasmic ribonucleoprotein granule and nuclear speck. Predicted to be part of nucleus. Biomarker of retinal degeneration. Human ortholog(s) of this gene implicated in breast cancer and ovarian cancer. Orthologous to human BARD1 (BRCA1 associated RING domain 1); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BARD-1; BRCA1-associated RING domain protein 1; RING-type E3 ubiquitin transferase BARD1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8980,069,960 - 80,144,167 (-)NCBIGRCr8
mRatBN7.2972,616,070 - 72,694,553 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl972,623,155 - 72,694,265 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx981,082,647 - 81,149,936 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0986,211,538 - 86,278,825 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0984,594,537 - 84,662,040 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0978,297,723 - 78,368,777 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl978,294,834 - 78,369,031 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0978,074,908 - 78,145,962 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4970,120,151 - 70,198,591 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1970,267,132 - 70,345,573 (-)NCBI
Celera970,040,784 - 70,110,644 (-)NCBICelera
Cytogenetic Map9q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(-)-demecolcine  (ISO)
1,2-dichloroethane  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3,7-dihydropurine-6-thione  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (EXP)
amitrole  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bicalutamide  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
cefaloridine  (EXP)
cisplatin  (ISO)
cobalt dichloride  (EXP)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
daunorubicin  (ISO)
dibenzofuran  (EXP)
dichloroacetic acid  (ISO)
diclofenac  (ISO)
doxorubicin  (EXP,ISO)
elemental selenium  (ISO)
Enterolactone  (ISO)
flavonoids  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
furan  (EXP)
gallic acid  (ISO)
Lasiocarpine  (ISO)
mercaptopurine  (EXP)
methamphetamine  (EXP)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monocrotaline  (ISO)
ochratoxin A  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
palbociclib  (ISO)
paracetamol  (EXP)
paraquat  (ISO)
PCB138  (ISO)
piroxicam  (ISO)
pravastatin  (EXP,ISO)
propanal  (ISO)
purine-6-thiol  (EXP)
rac-lactic acid  (ISO)
resveratrol  (EXP,ISO)
riddelliine  (ISO)
rotenone  (ISO)
selenium atom  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
tamoxifen  (ISO)
temozolomide  (ISO)
testosterone  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (EXP,ISO)
topotecan  (EXP)
triadimefon  (EXP)
trichloroethene  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
vitamin E  (ISO)
zaragozic acid A  (EXP,ISO)

References

References - curated
# Reference Title Reference Citation
1. BARD1 expression during spermatogenesis is associated with apoptosis and hormonally regulated. Feki A, etal., Biol Reprod. 2004 Nov;71(5):1614-24. Epub 2004 Jul 7.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Identification of an apoptotic cleavage product of BARD1 as an autoantigen: a potential factor in the antitumoral response mediated by apoptotic bodies. Gautier F, etal., Cancer Res 2000 Dec 15;60(24):6895-900.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. BARD1 variants are not associated with breast cancer risk in Australian familial breast cancer. Gorringe KL, etal., Breast Cancer Res Treat. 2008 Oct;111(3):505-9. Epub 2007 Oct 31.
6. Assignment of the BRCA1-associated RING domain gene (Bard1) to rat chromosome 9q34 by in situ hybridization and radiation hybrid mapping. Gratas C, etal., Cytogenet Cell Genet 2001;94(3-4):250-1.
7. Common non-synonymous polymorphisms in the BRCA1 Associated RING Domain (BARD1) gene are associated with breast cancer susceptibility: a case-control analysis. Huo X, etal., Breast Cancer Res Treat. 2007 May;102(3):329-37. Epub 2006 Sep 21.
8. BARD1 content correlates with increased DNA fragmentation associated with muscle wasting in tumour-bearing rats. Irminger-Finger I, etal., Oncol Rep. 2006 Jun;15(6):1425-8.
9. Mutational analysis of BARD1 in familial breast cancer patients in Japan. Ishitobi M, etal., Cancer Lett. 2003 Oct 8;200(1):1-7.
10. BARD1 and breast cancer in Poland. Jakubowska A, etal., Breast Cancer Res Treat. 2008 Jan;107(1):119-22. Epub 2007 Feb 27.
11. Effect of propofol on cardiac function and gene expression after ischemic-reperfusion in isolated rat heart. Kim YJ, etal., Korean J Anesthesiol. 2010 Feb;58(2):153-61. doi: 10.4097/kjae.2010.58.2.153. Epub 2010 Feb 28.
12. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
13. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
14. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
15. Gene expression changes in the retina after systemic administration of aldosterone. Ono A, etal., Jpn J Ophthalmol. 2018 Jul;62(4):499-507. doi: 10.1007/s10384-018-0595-4. Epub 2018 Apr 30.
16. GOA pipeline RGD automated data pipeline
17. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
18. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
19. Comprehensive gene review and curation RGD comprehensive gene curation
20. Assessment of citalopram and escitalopram on neuroblastoma cell lines. Cell toxicity and gene modulation. Sakka L, etal., Oncotarget. 2017 Jun 27;8(26):42789-42807. doi: 10.18632/oncotarget.17050.
21. The basal-like mammary carcinomas induced by Brca1 or Bard1 inactivation implicate the BRCA1/BARD1 heterodimer in tumor suppression. Shakya R, etal., Proc Natl Acad Sci U S A. 2008 May 13;105(19):7040-5. Epub 2008 Apr 28.
22. miR-21 enhances the protective effect of loperamide on rat cardiomyocytes against hypoxia/reoxygenation, reactive oxygen species production and apoptosis via regulating Akap8 and Bard1 expression. Shen H, etal., Exp Ther Med. 2019 Feb;17(2):1312-1320. doi: 10.3892/etm.2018.7047. Epub 2018 Dec 5.
23. The BARD1 Cys557Ser variant and breast cancer risk in Iceland. Stacey SN, etal., PLoS Med. 2006 Jul;3(7):e217.
24. BARD1 variants Cys557Ser and Val507Met in breast cancer predisposition. Vahteristo P, etal., Eur J Hum Genet. 2006 Feb;14(2):167-72.
25. Aberrant expression of BARD1 in breast and ovarian cancers with poor prognosis. Wu JY, etal., Int J Cancer. 2006 Mar 1;118(5):1215-26.
26. BARD1: an independent predictor of survival in non-small cell lung cancer. Zhang YQ, etal., Int J Cancer. 2012 Jul 1;131(1):83-94. doi: 10.1002/ijc.26346. Epub 2011 Dec 21.
Additional References at PubMed
PMID:11555636   PMID:12419249   PMID:12890688   PMID:15265711   PMID:15632137   PMID:15782130   PMID:17525342   PMID:19117993   PMID:19261748   PMID:19261749   PMID:20351172  


Genomics

Comparative Map Data
Bard1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8980,069,960 - 80,144,167 (-)NCBIGRCr8
mRatBN7.2972,616,070 - 72,694,553 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl972,623,155 - 72,694,265 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx981,082,647 - 81,149,936 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0986,211,538 - 86,278,825 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0984,594,537 - 84,662,040 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0978,297,723 - 78,368,777 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl978,294,834 - 78,369,031 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0978,074,908 - 78,145,962 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4970,120,151 - 70,198,591 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1970,267,132 - 70,345,573 (-)NCBI
Celera970,040,784 - 70,110,644 (-)NCBICelera
Cytogenetic Map9q33NCBI
BARD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382214,725,646 - 214,809,683 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2214,725,646 - 214,809,683 (-)EnsemblGRCh38hg38GRCh38
GRCh372215,590,370 - 215,674,407 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362215,301,507 - 215,382,673 (-)NCBINCBI36Build 36hg18NCBI36
Build 342215,418,782 - 215,499,872NCBI
Celera2209,361,498 - 209,442,679 (-)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2207,449,412 - 207,530,541 (-)NCBIHuRef
CHM1_12215,599,651 - 215,680,793 (-)NCBICHM1_1
T2T-CHM13v2.02215,210,222 - 215,294,294 (-)NCBIT2T-CHM13v2.0
Bard1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39171,066,694 - 71,142,300 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl171,066,657 - 71,142,305 (-)EnsemblGRCm39 Ensembl
GRCm38171,027,535 - 71,103,141 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl171,027,498 - 71,103,146 (-)EnsemblGRCm38mm10GRCm38
MGSCv37171,074,109 - 71,149,546 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36170,963,575 - 71,036,126 (-)NCBIMGSCv36mm8
Celera171,583,694 - 71,658,621 (-)NCBICelera
Cytogenetic Map1C3NCBI
cM Map135.67NCBI
Bard1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554571,187,942 - 1,253,803 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554571,187,942 - 1,258,475 (+)NCBIChiLan1.0ChiLan1.0
BARD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213117,351,232 - 117,435,613 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B117,366,194 - 117,450,575 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B101,984,287 - 102,068,523 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B220,456,972 - 220,541,145 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B220,456,972 - 220,541,145 (-)Ensemblpanpan1.1panPan2
LOC102156002
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.182,420,559 - 2,423,280 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha82,362,772 - 2,365,405 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.082,529,629 - 2,532,157 (-)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.082,279,602 - 2,282,127 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.082,546,112 - 2,548,640 (-)NCBIUU_Cfam_GSD_1.0
Bard1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303170,353,079 - 170,425,653 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365862,200,205 - 2,273,307 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365862,200,211 - 2,272,781 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BARD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15117,047,845 - 117,175,851 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115117,049,483 - 117,135,889 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215129,595,080 - 129,678,129 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BARD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110100,539,827 - 100,627,718 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10100,539,527 - 100,627,675 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604098,755,214 - 98,840,147 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bard1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247651,351,273 - 1,422,587 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247651,354,511 - 1,419,364 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Bard1
299 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:86
Interacting mature miRNAs:89
Transcripts:ENSRNOT00000020414
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat

Markers in Region
D9Rat155  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2972,625,378 - 72,625,593 (+)MAPPERmRatBN7.2
Rnor_6.0978,299,947 - 78,300,161NCBIRnor6.0
Rnor_5.0978,077,132 - 78,077,346UniSTSRnor5.0
RGSC_v3.4970,122,374 - 70,122,589RGDRGSC3.4
RGSC_v3.4970,122,375 - 70,122,589UniSTSRGSC3.4
RGSC_v3.1970,269,356 - 70,269,571RGD
Celera970,043,008 - 70,043,222UniSTS
SHRSP x BN Map950.0498RGD
SHRSP x BN Map950.0498UniSTS
Cytogenetic Map9q33UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 26 24 18 10 18 26 16 30
Low 2 17 24 15 9 15 4 4 39 18 11 11 4
Below cutoff 8 7 7 4 6 9 1 4

Sequence


RefSeq Acc Id: ENSRNOT00000020414   ⟹   ENSRNOP00000020414
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl972,623,178 - 72,694,265 (-)Ensembl
Rnor_6.0 Ensembl978,297,871 - 78,368,777 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000087870   ⟹   ENSRNOP00000075183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl972,623,155 - 72,694,265 (-)Ensembl
Rnor_6.0 Ensembl978,294,834 - 78,369,031 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106928   ⟹   ENSRNOP00000097768
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl972,623,155 - 72,674,328 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116643   ⟹   ENSRNOP00000079501
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl972,623,155 - 72,694,265 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119929   ⟹   ENSRNOP00000088768
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl972,623,155 - 72,694,265 (-)Ensembl
RefSeq Acc Id: NM_022622   ⟹   NP_072144
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8980,069,960 - 80,143,755 (-)NCBI
mRatBN7.2972,620,487 - 72,694,285 (-)NCBI
Rnor_6.0978,297,723 - 78,368,777 (-)NCBI
Rnor_5.0978,074,908 - 78,145,962 (-)NCBI
RGSC_v3.4970,120,151 - 70,198,591 (-)RGD
Celera970,040,784 - 70,110,644 (-)RGD
Sequence:
RefSeq Acc Id: XM_039084173   ⟹   XP_038940101
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8980,069,966 - 80,144,167 (-)NCBI
mRatBN7.2972,616,070 - 72,694,553 (-)NCBI
RefSeq Acc Id: XM_039084174   ⟹   XP_038940102
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8980,069,966 - 80,144,167 (-)NCBI
mRatBN7.2972,616,070 - 72,694,552 (-)NCBI
RefSeq Acc Id: XM_039084175   ⟹   XP_038940103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8980,069,966 - 80,144,167 (-)NCBI
mRatBN7.2972,616,070 - 72,694,550 (-)NCBI
RefSeq Acc Id: XM_039084176   ⟹   XP_038940104
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8980,069,966 - 80,144,167 (-)NCBI
mRatBN7.2972,616,070 - 72,694,105 (-)NCBI
RefSeq Acc Id: XM_063267688   ⟹   XP_063123758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8980,069,966 - 80,144,167 (-)NCBI
RefSeq Acc Id: XM_063267689   ⟹   XP_063123759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8980,096,410 - 80,144,167 (-)NCBI
RefSeq Acc Id: NP_072144   ⟸   NM_022622
- UniProtKB: Q9QZH2 (UniProtKB/Swiss-Prot),   A0A0G2K9Y6 (UniProtKB/TrEMBL),   A6KFF8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075183   ⟸   ENSRNOT00000087870
RefSeq Acc Id: ENSRNOP00000020414   ⟸   ENSRNOT00000020414
RefSeq Acc Id: XP_038940101   ⟸   XM_039084173
- Peptide Label: isoform X1
- UniProtKB: Q9QZH2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038940102   ⟸   XM_039084174
- Peptide Label: isoform X2
- UniProtKB: Q9QZH2 (UniProtKB/Swiss-Prot),   A0A8I6A6U6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940103   ⟸   XM_039084175
- Peptide Label: isoform X4
- UniProtKB: Q6J724 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940104   ⟸   XM_039084176
- Peptide Label: isoform X5
- UniProtKB: G3V7X7 (UniProtKB/TrEMBL),   Q6J724 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000088768   ⟸   ENSRNOT00000119929
RefSeq Acc Id: ENSRNOP00000079501   ⟸   ENSRNOT00000116643
RefSeq Acc Id: ENSRNOP00000097768   ⟸   ENSRNOT00000106928
RefSeq Acc Id: XP_063123758   ⟸   XM_063267688
- Peptide Label: isoform X3
- UniProtKB: Q9QZH2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063123759   ⟸   XM_063267689
- Peptide Label: isoform X6
Protein Domains
BRCT   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QZH2-F1-model_v2 AlphaFold Q9QZH2 1-768 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621072 AgrOrtholog
BioCyc Gene G2FUF-27255 BioCyc
Ensembl Genes ENSRNOG00000014960 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020414.5 UniProtKB/TrEMBL
  ENSRNOT00000087870.2 UniProtKB/TrEMBL
  ENSRNOT00000106928.1 UniProtKB/TrEMBL
  ENSRNOT00000116643.1 UniProtKB/TrEMBL
  ENSRNOT00000119929.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.10190 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BARD1_Znf-RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BRCT_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BRCT_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:64557 UniProtKB/Swiss-Prot
NCBI Gene 64557 ENTREZGENE
PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-RING_6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Bard1 PhenoGen
PRINTS ANKYRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BRCT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014960 RatGTEx
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BRCT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52113 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K9Y6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZNM7_RAT UniProtKB/TrEMBL
  A0A8I6A6U6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ATK8_RAT UniProtKB/TrEMBL
  A6KFF8 ENTREZGENE, UniProtKB/TrEMBL
  BARD1_RAT UniProtKB/Swiss-Prot
  G3V7X7 ENTREZGENE, UniProtKB/TrEMBL
  Q6J724 ENTREZGENE, UniProtKB/TrEMBL
  Q9QZH2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Bard1  BRCA1 associated RING domain 1    BRCA1-associated RING domain protein 1  Name updated 1299863 APPROVED
2002-08-07 Bard1  BRCA1-associated RING domain protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL