P2ry4 (pyrimidinergic receptor P2Y, G-protein coupled, 4) - Rat Genome Database

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Gene: P2ry4 (pyrimidinergic receptor P2Y, G-protein coupled, 4) Mus musculus
Analyze
Symbol: P2ry4
Name: pyrimidinergic receptor P2Y, G-protein coupled, 4
RGD ID: 62090
MGI Page MGI
Description: Enables G protein-coupled UTP receptor activity. Acts upstream of or within cellular response to prostaglandin E stimulus and transepithelial chloride transport. Predicted to be located in apical plasma membrane and basolateral plasma membrane. Predicted to be active in glutamatergic synapse and presynaptic active zone membrane. Is expressed in skeletal muscle. Orthologous to human P2RY4 (pyrimidinergic receptor P2Y4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: P2Y; P2Y purinoceptor 4; P2Y4; P2Y4 receptor; P2Y4R; purinergic receptor P2Y, G-protein coupled, 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm412  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X99,631,964 - 99,638,533 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX99,633,760 - 99,638,475 (-)EnsemblGRCm39 Ensembl
GRCm38X100,588,358 - 100,594,927 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX100,590,154 - 100,594,869 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X97,785,493 - 97,790,208 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X96,792,873 - 96,797,588 (-)NCBIMGSCv36mm8
CeleraX87,516,188 - 87,520,903 (-)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX43.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11259526   PMID:11290369   PMID:12477932   PMID:12644577   PMID:12814360   PMID:15670583   PMID:15718265   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:16980298   PMID:19250649   PMID:19423692   PMID:19889460   PMID:19890001   PMID:20630102   PMID:21413988   PMID:21873635   PMID:22437266   PMID:22865387  
PMID:23479225   PMID:24001770   PMID:25595790   PMID:26972684   PMID:27855539   PMID:28322086   PMID:36248854   PMID:36532779  


Genomics

Comparative Map Data
P2ry4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X99,631,964 - 99,638,533 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX99,633,760 - 99,638,475 (-)EnsemblGRCm39 Ensembl
GRCm38X100,588,358 - 100,594,927 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX100,590,154 - 100,594,869 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X97,785,493 - 97,790,208 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X96,792,873 - 96,797,588 (-)NCBIMGSCv36mm8
CeleraX87,516,188 - 87,520,903 (-)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX43.72NCBI
P2RY4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X70,258,166 - 70,260,204 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX70,258,166 - 70,260,204 (-)EnsemblGRCh38hg38GRCh38
GRCh37X69,478,016 - 69,480,054 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X69,394,741 - 69,396,379 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X69,261,247 - 69,262,675NCBI
CeleraX69,831,353 - 69,832,991 (-)NCBICelera
Cytogenetic MapXq13.1NCBI
HuRefX63,299,114 - 63,300,752 (-)NCBIHuRef
CHM1_1X69,371,994 - 69,373,632 (-)NCBICHM1_1
T2T-CHM13v2.0X68,691,490 - 68,693,528 (-)NCBIT2T-CHM13v2.0
P2ry4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X69,722,604 - 69,757,726 (-)NCBIGRCr8
mRatBN7.2X65,681,680 - 65,717,404 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX65,683,232 - 65,721,748 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX67,170,441 - 67,171,854 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X70,670,833 - 70,672,246 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X68,231,732 - 68,233,145 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X70,421,599 - 70,447,109 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX70,426,951 - 70,428,364 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X71,296,545 - 71,329,324 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X88,589,534 - 88,590,947 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X88,662,966 - 88,664,380 (-)NCBI
CeleraX66,045,899 - 66,047,312 (-)NCBICelera
Cytogenetic MapXq22NCBI
P2ry4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554759,800,541 - 9,802,055 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554759,794,538 - 9,802,055 (-)NCBIChiLan1.0ChiLan1.0
P2RY4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X69,935,449 - 69,937,488 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X69,939,051 - 69,941,090 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X59,526,621 - 59,528,248 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X69,585,984 - 69,587,611 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX69,586,340 - 69,587,437 (-)Ensemblpanpan1.1panPan2
P2RY4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X54,706,404 - 54,707,512 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX45,532,412 - 45,533,520 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X55,672,553 - 55,673,661 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X53,641,532 - 53,642,640 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X54,972,339 - 54,973,447 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X54,899,511 - 54,900,619 (-)NCBIUU_Cfam_GSD_1.0
P2ry4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X47,455,684 - 47,457,937 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367621,217,858 - 1,218,950 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367621,217,858 - 1,218,948 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
P2RY4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX56,279,346 - 56,286,400 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X56,284,736 - 56,285,833 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X63,479,522 - 63,480,619 (-)NCBISscrofa10.2Sscrofa10.2susScr3
P2RY4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X60,099,961 - 60,104,094 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX60,102,265 - 60,103,362 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660651,948,078 - 1,950,108 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
P2ry4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624903223,520 - 259,111 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624903221,985 - 257,903 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in P2ry4
151 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1308
Count of miRNA genes:600
Interacting mature miRNAs:756
Transcripts:ENSMUST00000053373
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
12879918Shm4_msperm head morphology 4 (mouse)X72072050102062720Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
1302054Gct4_mgranulosa cell tumorigenesis 4 (mouse)Not determinedX76124336102062720Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse

Markers in Region
px-56b9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X100,595,574 - 100,595,913UniSTSGRCm38
MGSCv37X97,790,913 - 97,791,252UniSTSGRCm37
CeleraX87,521,608 - 87,521,947UniSTS
Cytogenetic MapXC2UniSTS
UniSTS:494961  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X100,592,975 - 100,594,559UniSTSGRCm38
MGSCv37X97,788,314 - 97,789,898UniSTSGRCm37
CeleraX87,519,009 - 87,520,593UniSTS
Cytogenetic MapXC2UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000053373   ⟹   ENSMUSP00000055869
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX99,633,760 - 99,638,475 (-)Ensembl
GRCm38.p6 EnsemblX100,590,154 - 100,594,869 (-)Ensembl
RefSeq Acc Id: NM_020621   ⟹   NP_065646
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X99,633,760 - 99,638,475 (-)NCBI
GRCm38X100,590,154 - 100,594,869 (-)NCBI
MGSCv37X97,785,493 - 97,790,208 (-)RGD
CeleraX87,516,188 - 87,520,903 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006528175   ⟹   XP_006528238
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X99,631,964 - 99,638,531 (-)NCBI
GRCm38X100,588,358 - 100,594,925 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006528176   ⟹   XP_006528239
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X99,631,964 - 99,638,515 (-)NCBI
GRCm38X100,588,358 - 100,594,909 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006528177   ⟹   XP_006528240
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X99,631,964 - 99,638,433 (-)NCBI
GRCm38X100,588,358 - 100,594,827 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006528178   ⟹   XP_006528241
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X99,631,964 - 99,638,533 (-)NCBI
GRCm38X100,588,358 - 100,594,927 (-)NCBI
Sequence:
RefSeq Acc Id: NP_065646   ⟸   NM_020621
- UniProtKB: Q9JJS7 (UniProtKB/Swiss-Prot),   Q0VBT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006528241   ⟸   XM_006528178
- Peptide Label: isoform X1
- UniProtKB: Q9JJS7 (UniProtKB/Swiss-Prot),   Q0VBT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006528238   ⟸   XM_006528175
- Peptide Label: isoform X1
- UniProtKB: Q9JJS7 (UniProtKB/Swiss-Prot),   Q0VBT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006528239   ⟸   XM_006528176
- Peptide Label: isoform X1
- UniProtKB: Q9JJS7 (UniProtKB/Swiss-Prot),   Q0VBT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006528240   ⟸   XM_006528177
- Peptide Label: isoform X1
- UniProtKB: Q9JJS7 (UniProtKB/Swiss-Prot),   Q0VBT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000055869   ⟸   ENSMUST00000053373
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JJS7-F1-model_v2 AlphaFold Q9JJS7 1-361 view protein structure

Promoters
RGD ID:6846057
Promoter ID:MM_KWN:61275
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:NM_020621
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X97,789,751 - 97,790,251 (-)MPROMDB
RGD ID:13681032
Promoter ID:EPDNEW_M24665
Type:multiple initiation site
Name:P2ry4_1
Description:Mus musculus pyrimidinergic receptor P2Y, G-protein coupled,4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X100,594,866 - 100,594,926EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1926594 AgrOrtholog
Ensembl Genes ENSMUSG00000044359 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000053373 ENTREZGENE
  ENSMUST00000053373.2 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P2Y4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:57385 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1926594 ENTREZGENE
NCBI Gene 57385 ENTREZGENE
PANTHER PTHR24231:SF21 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PURINOCEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen P2ry4 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P2Y4PRNOCPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P2YPURNOCPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt P2RY4_MOUSE UniProtKB/Swiss-Prot
  Q0VBT7 ENTREZGENE, UniProtKB/TrEMBL
  Q9JJS7 ENTREZGENE