Ptprg (protein tyrosine phosphatase, receptor type, G) - Rat Genome Database

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Gene: Ptprg (protein tyrosine phosphatase, receptor type, G) Rattus norvegicus
Analyze
Symbol: Ptprg
Name: protein tyrosine phosphatase, receptor type, G
RGD ID: 620774
Description: Predicted to enable identical protein binding activity and protein tyrosine phosphatase activity. Involved in negative regulation of neuron projection development. Located in extracellular space. Orthologous to human PTPRG (protein tyrosine phosphatase receptor type G); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 4-tert-Octylphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: protein tyrosine phosphatase gamma; Protein tyrosine phosphatase, gamma (provisional HGM11 symbol); Ptpg; receptor-like protein tyrosine phosphatase gamma; receptor-type tyrosine-protein phosphatase gamma; RPTP gamma; RPTP gamma A; RPTP gamma B; RPTP gamma C; RPTP gamma S
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21512,872,284 - 13,552,186 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1512,871,721 - 13,554,094 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1515,000,445 - 15,679,945 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01515,958,897 - 16,638,385 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01514,213,696 - 14,893,219 (-)NCBIRnor_WKY
Rnor_6.01512,926,056 - 13,633,839 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1512,926,167 - 13,228,607 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01516,953,275 - 17,647,626 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41514,449,352 - 15,130,760 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11514,449,351 - 14,966,931 (-)NCBI
Celera1512,868,965 - 13,547,381 (-)NCBICelera
Cytogenetic Map15p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-tert-Octylphenol  (EXP)
4-vinylcyclohexene dioxide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
7,12-dimethyltetraphene  (ISO)
acetamide  (EXP)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-chloroethyl) sulfide  (EXP,ISO)
bisphenol A  (EXP,ISO)
bromobenzene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
chrysene  (ISO)
cisplatin  (EXP,ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibenz[a,h]anthracene  (ISO)
diethylstilbestrol  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
fonofos  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
inulin  (ISO)
irinotecan  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (EXP,ISO)
melphalan  (ISO)
methapyrilene  (EXP)
methotrexate  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-nitrosomorpholine  (EXP)
nickel sulfate  (ISO)
p-tert-Amylphenol  (EXP)
paracetamol  (ISO)
parathion  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
terbufos  (ISO)
Tesaglitazar  (EXP)
tetraphene  (ISO)
titanium dioxide  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Characterization of rat receptor-like protein tyrosine phosphatase gamma isoforms. Shintani T, etal., Biochem Biophys Res Commun 1997 Jan 13;230(2):419-25.
9. Receptor-like protein tyrosine phosphatase gamma (RPTPgamma), but not PTPzeta/RPTPbeta, inhibits nerve-growth-factor-induced neurite outgrowth in PC12D cells. Shintani T, etal., Dev Neurosci 2001;23(1):55-69.
Additional References at PubMed
PMID:15978577   PMID:19167335   PMID:20014386   PMID:21724833   PMID:23376485   PMID:23533145   PMID:23716698  


Genomics

Comparative Map Data
Ptprg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21512,872,284 - 13,552,186 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1512,871,721 - 13,554,094 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1515,000,445 - 15,679,945 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01515,958,897 - 16,638,385 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01514,213,696 - 14,893,219 (-)NCBIRnor_WKY
Rnor_6.01512,926,056 - 13,633,839 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1512,926,167 - 13,228,607 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01516,953,275 - 17,647,626 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41514,449,352 - 15,130,760 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11514,449,351 - 14,966,931 (-)NCBI
Celera1512,868,965 - 13,547,381 (-)NCBICelera
Cytogenetic Map15p16NCBI
PTPRG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38361,561,571 - 62,297,609 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl361,561,569 - 62,297,609 (+)EnsemblGRCh38hg38GRCh38
GRCh37361,547,245 - 62,283,284 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36361,522,285 - 62,254,738 (+)NCBINCBI36Build 36hg18NCBI36
Build 34361,522,284 - 62,254,737NCBI
Celera361,560,149 - 62,297,663 (+)NCBICelera
Cytogenetic Map3p14.2NCBI
HuRef361,645,865 - 62,378,614 (+)NCBIHuRef
CHM1_1361,497,665 - 62,231,710 (+)NCBICHM1_1
T2T-CHM13v2.0361,604,735 - 62,341,118 (+)NCBIT2T-CHM13v2.0
Ptprg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391410,227,722 - 10,916,341 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1410,227,722 - 10,916,220 (-)EnsemblGRCm39 Ensembl
GRCm381411,553,440 - 12,242,041 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1411,553,532 - 12,242,041 (+)EnsemblGRCm38mm10GRCm38
MGSCv371412,386,067 - 13,074,553 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361410,347,279 - 11,031,196 (+)NCBIMGSCv36mm8
Celera147,168,551 - 7,867,137 (+)NCBICelera
Celera1415,457,844 - 15,462,854 (-)NCBICelera
Cytogenetic Map14A1NCBI
cM Map146.33NCBI
Ptprg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555173,676,342 - 4,352,909 (-)NCBIChiLan1.0ChiLan1.0
PTPRG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1361,514,095 - 62,246,526 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0361,487,734 - 62,221,149 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1362,876,655 - 63,608,175 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl362,877,232 - 63,604,275 (+)Ensemblpanpan1.1panPan2
PTPRG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12028,777,306 - 29,481,097 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2028,778,386 - 29,481,145 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2028,705,294 - 29,408,229 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02029,011,902 - 29,715,647 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2029,011,286 - 29,715,645 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12028,497,557 - 29,200,144 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02028,855,762 - 29,559,818 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02028,955,575 - 29,659,297 (-)NCBIUU_Cfam_GSD_1.0
Ptprg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118165,734,435 - 165,784,177 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366374,126,058 - 4,248,190 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPRG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1343,548,770 - 43,886,214 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11343,132,786 - 43,869,843 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21347,543,401 - 47,873,302 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTPRG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12222,652,375 - 23,370,973 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2223,061,935 - 23,370,960 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041143,495,813 - 144,076,600 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptprg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248228,378,048 - 8,942,342 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ptprg
4241 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:25
Count of miRNA genes:22
Interacting mature miRNAs:24
Transcripts:ENSRNOT00000042010
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15105825014481294Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)colorectal tumor number (CMO:0001794)15226636822711984Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat

Markers in Region
D15Rat136  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21512,929,603 - 12,929,785 (+)MAPPERmRatBN7.2
Rnor_6.01512,982,697 - 12,982,878NCBIRnor6.0
Rnor_5.01517,009,983 - 17,010,164UniSTSRnor5.0
RGSC_v3.41514,506,878 - 14,507,060RGDRGSC3.4
RGSC_v3.41514,506,879 - 14,507,060UniSTSRGSC3.4
RGSC_v3.11514,506,878 - 14,507,060RGD
Celera1512,925,256 - 12,925,437UniSTS
SHRSP x BN Map159.5698RGD
SHRSP x BN Map159.5698UniSTS
Cytogenetic Map15p16-p15UniSTS
D15Got18  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21513,434,438 - 13,434,565 (+)MAPPERmRatBN7.2
Rnor_6.01513,500,629 - 13,500,755NCBIRnor6.0
Rnor_5.01517,516,160 - 17,516,286UniSTSRnor5.0
RGSC_v3.41515,012,985 - 15,013,112RGDRGSC3.4
RGSC_v3.41515,012,986 - 15,013,112UniSTSRGSC3.4
RGSC_v3.11515,012,986 - 15,013,112RGD
Celera1513,429,108 - 13,429,234UniSTS
RH 3.4 Map15110.0UniSTS
RH 3.4 Map15110.0RGD
RH 2.0 Map1562.3RGD
Cytogenetic Map15p16-p15UniSTS
D15Kyo1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21513,520,624 - 13,520,771 (+)MAPPERmRatBN7.2
Rnor_6.01513,602,281 - 13,602,425NCBIRnor6.0
Rnor_5.01517,616,068 - 17,616,212UniSTSRnor5.0
RGSC_v3.41515,099,202 - 15,099,346UniSTSRGSC3.4
Celera1513,515,813 - 13,515,957UniSTS
Cytogenetic Map15p16-p15UniSTS
RH133004  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01517,198,751 - 17,199,159NCBIRnor5.0
RGSC_v3.41514,701,554 - 14,701,954UniSTSRGSC3.4
Celera1513,116,466 - 13,116,866UniSTS
Cytogenetic Map15p16-p15UniSTS
BE102252  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21513,548,177 - 13,548,351 (+)MAPPERmRatBN7.2
Rnor_6.01513,629,831 - 13,630,004NCBIRnor6.0
Rnor_5.01517,643,618 - 17,643,791UniSTSRnor5.0
RGSC_v3.41515,126,752 - 15,126,925UniSTSRGSC3.4
Celera1513,543,373 - 13,543,546UniSTS
RH 3.4 Map1596.6UniSTS
Cytogenetic Map15p16-p15UniSTS
BE116836  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21513,331,986 - 13,332,176 (+)MAPPERmRatBN7.2
Rnor_6.01513,398,010 - 13,398,199NCBIRnor6.0
Rnor_5.01517,413,541 - 17,413,730UniSTSRnor5.0
RGSC_v3.41514,910,301 - 14,910,490UniSTSRGSC3.4
Celera1513,326,770 - 13,326,959UniSTS
RH 3.4 Map15109.3UniSTS
Cytogenetic Map15p16-p15UniSTS
BF390487  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21513,387,062 - 13,387,232 (+)MAPPERmRatBN7.2
Rnor_6.01513,453,254 - 13,453,423NCBIRnor6.0
Rnor_5.01517,468,785 - 17,468,954UniSTSRnor5.0
RGSC_v3.41514,965,611 - 14,965,780UniSTSRGSC3.4
Celera1513,381,733 - 13,381,902UniSTS
RH 3.4 Map1596.9UniSTS
Cytogenetic Map15p16-p15UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 34 14 5 2 5 2 2 74 35 34 11 2
Low 2 9 43 36 17 36 6 9 7 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000042010   ⟹   ENSRNOP00000039045
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1512,871,721 - 13,554,094 (-)Ensembl
Rnor_6.0 Ensembl1512,926,167 - 13,228,607 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000088214   ⟹   ENSRNOP00000073305
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1512,871,721 - 13,164,493 (-)Ensembl
Rnor_6.0 Ensembl1512,926,167 - 13,228,607 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099333   ⟹   ENSRNOP00000095910
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1512,871,721 - 12,927,418 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101353   ⟹   ENSRNOP00000087710
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1512,871,721 - 13,554,094 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104654   ⟹   ENSRNOP00000094306
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1513,021,876 - 13,553,071 (-)Ensembl
RefSeq Acc Id: NM_134356   ⟹   NP_599183
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,872,284 - 13,552,186 (-)NCBI
Rnor_6.01512,926,056 - 13,633,839 (-)NCBI
Rnor_5.01516,953,275 - 17,647,626 (-)NCBI
RGSC_v3.41514,449,352 - 15,130,760 (-)RGD
Celera1512,868,965 - 13,547,381 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_599183 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB02231 (Get FASTA)   NCBI Sequence Viewer  
  AAN72429 (Get FASTA)   NCBI Sequence Viewer  
  AAN72430 (Get FASTA)   NCBI Sequence Viewer  
  AAN72431 (Get FASTA)   NCBI Sequence Viewer  
  AAN72432 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_599183   ⟸   NM_134356
- UniProtKB: F1LP13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000039045   ⟸   ENSRNOT00000042010
RefSeq Acc Id: ENSRNOP00000073305   ⟸   ENSRNOT00000088214
RefSeq Acc Id: ENSRNOP00000087710   ⟸   ENSRNOT00000101353
RefSeq Acc Id: ENSRNOP00000095910   ⟸   ENSRNOT00000099333
RefSeq Acc Id: ENSRNOP00000094306   ⟸   ENSRNOT00000104654
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LP13-F1-model_v2 AlphaFold F1LP13 1-1372 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620774 AgrOrtholog
BioCyc Gene G2FUF-14349 BioCyc
Ensembl Genes ENSRNOG00000009419 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000039045 ENTREZGENE
  ENSRNOP00000039045.6 UniProtKB/TrEMBL
  ENSRNOP00000073305.2 UniProtKB/TrEMBL
  ENSRNOP00000087710.1 UniProtKB/TrEMBL
  ENSRNOP00000094306.1 UniProtKB/TrEMBL
  ENSRNOP00000095910.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000042010 ENTREZGENE
  ENSRNOT00000042010.6 UniProtKB/TrEMBL
  ENSRNOT00000088214.2 UniProtKB/TrEMBL
  ENSRNOT00000099333.1 UniProtKB/TrEMBL
  ENSRNOT00000101353.1 UniProtKB/TrEMBL
  ENSRNOT00000104654.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.10.200.10 UniProtKB/TrEMBL
  3.90.190.10 UniProtKB/TrEMBL
InterPro alpha_CARP_receptor-type UniProtKB/TrEMBL
  Carbonic_anhydrase_a UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class UniProtKB/TrEMBL
  Carbonic_anhydrase_a_sf UniProtKB/TrEMBL
  Fibronectin_type3 UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  Tyr/Dual-specificity_Pase UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  Tyr_Pase_rcpt/non-rcpt UniProtKB/TrEMBL
KEGG Report rno:171357 UniProtKB/TrEMBL
NCBI Gene 171357 ENTREZGENE
PANTHER ALPHA-CARBONIC ANHYDRASE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PTHR18952 UniProtKB/TrEMBL
  RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE UniProtKB/TrEMBL
  RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE GAMMA UniProtKB/TrEMBL
Pfam Carb_anhydrase UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
  Y_phosphatase UniProtKB/TrEMBL
PharmGKB PTPRG RGD
PhenoGen Ptprg PhenoGen
PRINTS PRTYPHPHTASE UniProtKB/TrEMBL
PROSITE ALPHA_CA_2 UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/TrEMBL
SMART Carb_anhydrase UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  PTPc UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP Euk_COanhd UniProtKB/TrEMBL
  FN_III-like UniProtKB/TrEMBL
  SSF52799 UniProtKB/TrEMBL
UniProt A0A0G2K561_RAT UniProtKB/TrEMBL
  A0A8I6A6D9_RAT UniProtKB/TrEMBL
  A0A8I6ARJ1_RAT UniProtKB/TrEMBL
  A0A8I6AZZ3_RAT UniProtKB/TrEMBL
  F1LP13 ENTREZGENE, UniProtKB/TrEMBL
  Q8CIN3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2003-04-09 Ptprg  protein tyrosine phosphatase, receptor type, G      Symbol and Name updated 629477 APPROVED
2003-03-06 Ptprg  protein tyrosine phosphatase, receptor type, G  Ptpg  Protein tyrosine phosphatase, gamma (provisional HGM11 symbol)  Data Merged 628472 PROVISIONAL
2002-08-07 Ptprg  protein tyrosine phosphatase, receptor type, G      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Ptpg  Protein tyrosine phosphatase, gamma (provisional HGM11 symbol)      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in brain, kidney, lung, and heart 633859