Elf1 (E74 like ETS transcription factor 1) - Rat Genome Database

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Gene: Elf1 (E74 like ETS transcription factor 1) Rattus norvegicus
Analyze
Symbol: Elf1
Name: E74 like ETS transcription factor 1
RGD ID: 620697
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in regulation of DNA-templated transcription. Predicted to be active in nucleus. Orthologous to human ELF1 (E74 like ETS transcription factor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E74-like factor 1; E74-like factor 1 (ets domain transcription factor); ETS-related transcription factor Elf-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81561,354,026 - 61,395,762 (+)NCBIGRCr8
mRatBN7.21554,890,644 - 54,986,721 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1554,865,616 - 54,986,699 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1559,078,340 - 59,119,021 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01560,196,734 - 60,237,414 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01557,021,604 - 57,062,278 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01561,772,544 - 61,868,442 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1561,826,711 - 61,868,343 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01565,436,987 - 65,532,178 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41560,793,794 - 60,835,189 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11560,809,573 - 60,850,969 (+)NCBI
Celera1554,525,607 - 54,566,099 (+)NCBICelera
Cytogenetic Map15q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
clothianidin  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dichloromethane  (ISO)
diethylstilbestrol  (ISO)
dorsomorphin  (ISO)
epoxiconazole  (ISO)
flavonoids  (EXP)
FR900359  (ISO)
gentamycin  (EXP)
geraniol  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
N(4)-hydroxycytidine  (ISO)
N-nitrosodiethylamine  (ISO)
niclosamide  (ISO)
oxaliplatin  (EXP)
panobinostat  (ISO)
paracetamol  (ISO)
pentachlorophenol  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
SB 431542  (ISO)
senecionine  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
torcetrapib  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. Splice isoforms of transcription factor Elf-1 affecting its regulatory function in transcription-molecular cloning of rat Elf-1. Nishiyama C, etal., Biosci Biotechnol Biochem 2000 Dec;64(12):2601-7.
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8756667   PMID:14738763   PMID:14970218   PMID:16002702   PMID:19674970   PMID:19796622  


Genomics

Comparative Map Data
Elf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81561,354,026 - 61,395,762 (+)NCBIGRCr8
mRatBN7.21554,890,644 - 54,986,721 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1554,865,616 - 54,986,699 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1559,078,340 - 59,119,021 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01560,196,734 - 60,237,414 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01557,021,604 - 57,062,278 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01561,772,544 - 61,868,442 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1561,826,711 - 61,868,343 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01565,436,987 - 65,532,178 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41560,793,794 - 60,835,189 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11560,809,573 - 60,850,969 (+)NCBI
Celera1554,525,607 - 54,566,099 (+)NCBICelera
Cytogenetic Map15q12NCBI
ELF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381340,931,919 - 41,061,386 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1340,931,924 - 41,061,440 (-)EnsemblGRCh38hg38GRCh38
GRCh371341,506,055 - 41,635,522 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361340,404,164 - 40,454,418 (-)NCBINCBI36Build 36hg18NCBI36
Build 341340,404,164 - 40,454,418NCBI
Celera1322,563,467 - 22,650,954 (-)NCBICelera
Cytogenetic Map13q14.11NCBI
HuRef1322,305,948 - 22,394,169 (-)NCBIHuRef
CHM1_11341,473,692 - 41,561,371 (-)NCBICHM1_1
T2T-CHM13v2.01340,150,930 - 40,280,534 (-)NCBIT2T-CHM13v2.0
Elf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391479,718,619 - 79,819,916 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1479,718,634 - 79,819,934 (+)EnsemblGRCm39 Ensembl
GRCm381479,481,174 - 79,582,491 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1479,481,194 - 79,582,494 (+)EnsemblGRCm38mm10GRCm38
MGSCv371479,881,001 - 79,982,283 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361478,215,349 - 78,316,631 (+)NCBIMGSCv36mm8
Celera1476,981,316 - 77,082,589 (+)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1442.67NCBI
Elf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540450,952,907 - 51,020,229 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540450,952,907 - 51,020,229 (-)NCBIChiLan1.0ChiLan1.0
ELF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21440,452,043 - 40,578,633 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11331,554,781 - 31,681,724 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01322,136,952 - 22,263,523 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11340,726,930 - 40,853,424 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1340,726,930 - 40,774,734 (-)Ensemblpanpan1.1panPan2
ELF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1229,565,912 - 9,671,017 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl229,592,978 - 9,670,271 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha229,562,008 - 9,668,069 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0229,789,000 - 9,895,485 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl229,789,000 - 9,894,739 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1229,487,393 - 9,593,262 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0229,536,952 - 9,642,910 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0229,551,384 - 9,657,678 (+)NCBIUU_Cfam_GSD_1.0
Elf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945151,345,939 - 151,450,022 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936667500,195 - 553,808 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936667449,682 - 553,780 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1125,772,316 - 25,900,802 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11125,772,090 - 25,896,613 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21126,327,352 - 26,385,612 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ELF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1319,218,161 - 19,303,116 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl319,217,771 - 19,303,113 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605724,903,520 - 25,019,136 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Elf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474814,017,621 - 14,091,619 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474813,987,001 - 14,090,451 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Elf1
370 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:328
Count of miRNA genes:187
Interacting mature miRNAs:218
Transcripts:ENSRNOT00000068269
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155079449473699215Rat
2317050Aia24Adjuvant induced arthritis QTL 242.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)155284790873690657Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat

Markers in Region
D15Got206  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21554,953,233 - 54,953,351 (+)MAPPERmRatBN7.2
Rnor_6.01561,834,982 - 61,835,099NCBIRnor6.0
Rnor_5.01565,498,411 - 65,498,528UniSTSRnor5.0
RGSC_v3.41560,802,070 - 60,802,187UniSTSRGSC3.4
Celera1554,533,883 - 54,534,000UniSTS
Cytogenetic Map15q12UniSTS
RH129784  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21554,984,733 - 54,984,918 (+)MAPPERmRatBN7.2
Rnor_6.01561,866,473 - 61,866,657NCBIRnor6.0
Rnor_5.01565,530,209 - 65,530,393UniSTSRnor5.0
RGSC_v3.41560,834,313 - 60,834,497UniSTSRGSC3.4
Celera1554,565,223 - 54,565,407UniSTS
RH 3.4 Map15460.5UniSTS
Cytogenetic Map15q12UniSTS
U19617  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21554,985,954 - 54,986,021 (+)MAPPERmRatBN7.2
Rnor_6.01561,867,694 - 61,867,760NCBIRnor6.0
Rnor_5.01565,531,430 - 65,531,496UniSTSRnor5.0
RGSC_v3.41560,835,534 - 60,835,600UniSTSRGSC3.4
Celera1554,566,444 - 54,566,510UniSTS
Cytogenetic Map15q12UniSTS
RH138647  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21554,986,217 - 54,986,433 (+)MAPPERmRatBN7.2
Rnor_6.01561,867,957 - 61,868,172NCBIRnor6.0
Rnor_5.01565,531,693 - 65,531,908UniSTSRnor5.0
RGSC_v3.41560,835,797 - 60,836,012UniSTSRGSC3.4
Celera1554,566,707 - 54,566,922UniSTS
RH 3.4 Map15459.3UniSTS
Cytogenetic Map15q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 30 47 31 19 31 35 34 11
Low 13 10 10 10 8 11 74 7 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB030216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB030217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB046531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC123280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB782606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000068269   ⟹   ENSRNOP00000060815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1554,865,616 - 54,986,699 (+)Ensembl
Rnor_6.0 Ensembl1561,826,711 - 61,868,343 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079417   ⟹   ENSRNOP00000070086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1554,865,616 - 54,986,699 (+)Ensembl
Rnor_6.0 Ensembl1561,826,937 - 61,866,924 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000084005   ⟹   ENSRNOP00000072421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1554,865,616 - 54,986,699 (+)Ensembl
Rnor_6.0 Ensembl1561,826,937 - 61,866,924 (+)Ensembl
RefSeq Acc Id: NM_053520   ⟹   NP_445972
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81561,354,026 - 61,394,669 (+)NCBI
mRatBN7.21554,944,958 - 54,985,610 (+)NCBI
Rnor_6.01561,826,706 - 61,867,349 (+)NCBI
Rnor_5.01565,436,987 - 65,532,178 (+)NCBI
RGSC_v3.41560,793,794 - 60,835,189 (+)RGD
Celera1554,525,607 - 54,566,099 (+)RGD
Sequence:
RefSeq Acc Id: XM_039093704   ⟹   XP_038949632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81561,354,187 - 61,395,762 (+)NCBI
mRatBN7.21554,920,691 - 54,986,721 (+)NCBI
RefSeq Acc Id: NP_445972   ⟸   NM_053520
- UniProtKB: G3V9V2 (UniProtKB/TrEMBL),   Q9EQY3 (UniProtKB/TrEMBL),   A6HTZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070086   ⟸   ENSRNOT00000079417
RefSeq Acc Id: ENSRNOP00000060815   ⟸   ENSRNOT00000068269
RefSeq Acc Id: ENSRNOP00000072421   ⟸   ENSRNOT00000084005
RefSeq Acc Id: XP_038949632   ⟸   XM_039093704
- Peptide Label: isoform X1
- UniProtKB: Q9EQY2 (UniProtKB/TrEMBL),   A6HTZ9 (UniProtKB/TrEMBL),   Q9EQY3 (UniProtKB/TrEMBL),   A6HTZ8 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9V2-F1-model_v2 AlphaFold G3V9V2 1-615 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620697 AgrOrtholog
BioCyc Gene G2FUF-12990 BioCyc
Ensembl Genes ENSRNOG00000011762 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068269.3 UniProtKB/TrEMBL
  ENSRNOT00000079417.2 UniProtKB/TrEMBL
  ENSRNOT00000084005.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro Ets UniProtKB/TrEMBL
  ETS_fam UniProtKB/TrEMBL
  TF_Elf-1_N UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report rno:85424 UniProtKB/TrEMBL
NCBI Gene 85424 ENTREZGENE
PANTHER ETS-RELATED TRANSCRIPTION FACTOR ELF-1 UniProtKB/TrEMBL
  PTHR11849 UniProtKB/TrEMBL
Pfam Elf-1_N UniProtKB/TrEMBL
  Ets UniProtKB/TrEMBL
PhenoGen Elf1 PhenoGen
PRINTS ETSDOMAIN UniProtKB/TrEMBL
PROSITE ETS_DOMAIN_1 UniProtKB/TrEMBL
  ETS_DOMAIN_2 UniProtKB/TrEMBL
  ETS_DOMAIN_3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011762 RatGTEx
SMART ETS UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt A6HTZ6 ENTREZGENE, UniProtKB/TrEMBL
  A6HTZ8 ENTREZGENE, UniProtKB/TrEMBL
  A6HTZ9 ENTREZGENE, UniProtKB/TrEMBL
  A6HU00_RAT UniProtKB/TrEMBL
  A6HU01_RAT UniProtKB/TrEMBL
  A6HU02_RAT UniProtKB/TrEMBL
  G3V9V2 ENTREZGENE, UniProtKB/TrEMBL
  Q9EQY2 ENTREZGENE
  Q9EQY3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q9EQY1 UniProtKB/TrEMBL
  Q9EQY2 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-07 Elf1  E74 like ETS transcription factor 1  Elf1  E74-like factor 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Elf1  E74-like factor 1    E74-like factor 1 (ets domain transcription factor)  Name updated 1299863 APPROVED
2002-08-07 Elf1  E74-like factor 1 (ets domain transcription factor)      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_mutations_overexpression overexpression inhibited Fc epsilonRI alpha chain expression 632590