Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | genetic disease | | ISO | ELF1 (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Inborn genetic diseases | ClinVar | | |
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Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | genetic disease | | ISO | ELF1 (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Inborn genetic diseases | ClinVar | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
3. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
4. | Electronic Transfer of LocusLink and RefSeq Data | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
5. | Splice isoforms of transcription factor Elf-1 affecting its regulatory function in transcription-molecular cloning of rat Elf-1. | Nishiyama C, etal., Biosci Biotechnol Biochem 2000 Dec;64(12):2601-7. |
6. | GOA pipeline | RGD automated data pipeline |
7. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
8. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:8756667 | PMID:14738763 | PMID:14970218 | PMID:16002702 | PMID:19674970 | PMID:19796622 |
Elf1 (Rattus norvegicus - Norway rat) |
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ELF1 (Homo sapiens - human) |
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Elf1 (Mus musculus - house mouse) |
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Elf1 (Chinchilla lanigera - long-tailed chinchilla) |
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ELF1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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ELF1 (Canis lupus familiaris - dog) |
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Elf1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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ELF1 (Sus scrofa - pig) |
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ELF1 (Chlorocebus sabaeus - green monkey) |
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Elf1 (Heterocephalus glaber - naked mole-rat) |
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Variants in Elf1
370 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
D15Got206 |
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RH129784 |
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U19617 |
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RH138647 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 30 | 47 | 31 | 19 | 31 | 35 | 34 | 11 | ||||
Low | 13 | 10 | 10 | 10 | 8 | 11 | 74 | 7 | 8 | ||||
Below cutoff |
RefSeq Transcripts | NM_053520 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_008770898 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008770899 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008770901 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008770902 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008770903 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017599811 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039093704 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AB030216 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AB030217 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AB046531 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AC123280 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CB782606 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH473951 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ221456 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ233920 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000015 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000068269 ⟹ ENSRNOP00000060815 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000079417 ⟹ ENSRNOP00000070086 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000084005 ⟹ ENSRNOP00000072421 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_053520 ⟹ NP_445972 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039093704 ⟹ XP_038949632 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Protein RefSeqs | NP_445972 | (Get FASTA) | NCBI Sequence Viewer |
XP_038949632 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | BAB20034 | (Get FASTA) | NCBI Sequence Viewer |
BAB20035 | (Get FASTA) | NCBI Sequence Viewer | |
BAB62174 | (Get FASTA) | NCBI Sequence Viewer | |
EDM02359 | (Get FASTA) | NCBI Sequence Viewer | |
EDM02360 | (Get FASTA) | NCBI Sequence Viewer | |
EDM02361 | (Get FASTA) | NCBI Sequence Viewer | |
EDM02362 | (Get FASTA) | NCBI Sequence Viewer | |
EDM02363 | (Get FASTA) | NCBI Sequence Viewer | |
EDM02364 | (Get FASTA) | NCBI Sequence Viewer | |
EDM02365 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000060815.1 | ||
ENSRNOP00000070086.1 | |||
ENSRNOP00000072421 | |||
ENSRNOP00000072421.1 |
RefSeq Acc Id: | NP_445972 ⟸ NM_053520 |
- UniProtKB: | G3V9V2 (UniProtKB/TrEMBL), Q9EQY3 (UniProtKB/TrEMBL), A6HTZ6 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000070086 ⟸ ENSRNOT00000079417 |
RefSeq Acc Id: | ENSRNOP00000060815 ⟸ ENSRNOT00000068269 |
RefSeq Acc Id: | ENSRNOP00000072421 ⟸ ENSRNOT00000084005 |
RefSeq Acc Id: | XP_038949632 ⟸ XM_039093704 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q9EQY2 (UniProtKB/TrEMBL), A6HTZ9 (UniProtKB/TrEMBL), Q9EQY3 (UniProtKB/TrEMBL), A6HTZ8 (UniProtKB/TrEMBL) |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-G3V9V2-F1-model_v2 | AlphaFold | G3V9V2 | 1-615 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:620697 | AgrOrtholog |
BioCyc Gene | G2FUF-12990 | BioCyc |
Ensembl Genes | ENSRNOG00000011762 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000068269.3 | UniProtKB/TrEMBL |
ENSRNOT00000079417.2 | UniProtKB/TrEMBL | |
ENSRNOT00000084005.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.10.10.10 | UniProtKB/TrEMBL |
InterPro | Ets | UniProtKB/TrEMBL |
ETS_fam | UniProtKB/TrEMBL | |
TF_Elf-1_N | UniProtKB/TrEMBL | |
WH-like_DNA-bd_sf | UniProtKB/TrEMBL | |
WH_DNA-bd_sf | UniProtKB/TrEMBL | |
KEGG Report | rno:85424 | UniProtKB/TrEMBL |
NCBI Gene | 85424 | ENTREZGENE |
PANTHER | ETS-RELATED TRANSCRIPTION FACTOR ELF-1 | UniProtKB/TrEMBL |
PTHR11849 | UniProtKB/TrEMBL | |
Pfam | Elf-1_N | UniProtKB/TrEMBL |
Ets | UniProtKB/TrEMBL | |
PhenoGen | Elf1 | PhenoGen |
PRINTS | ETSDOMAIN | UniProtKB/TrEMBL |
PROSITE | ETS_DOMAIN_1 | UniProtKB/TrEMBL |
ETS_DOMAIN_2 | UniProtKB/TrEMBL | |
ETS_DOMAIN_3 | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000011762 | RatGTEx |
SMART | ETS | UniProtKB/TrEMBL |
Superfamily-SCOP | SSF46785 | UniProtKB/TrEMBL |
UniProt | A6HTZ6 | ENTREZGENE, UniProtKB/TrEMBL |
A6HTZ8 | ENTREZGENE, UniProtKB/TrEMBL | |
A6HTZ9 | ENTREZGENE, UniProtKB/TrEMBL | |
A6HU00_RAT | UniProtKB/TrEMBL | |
A6HU01_RAT | UniProtKB/TrEMBL | |
A6HU02_RAT | UniProtKB/TrEMBL | |
G3V9V2 | ENTREZGENE, UniProtKB/TrEMBL | |
Q9EQY2 | ENTREZGENE | |
Q9EQY3 | ENTREZGENE, UniProtKB/TrEMBL | |
UniProt Secondary | Q9EQY1 | UniProtKB/TrEMBL |
Q9EQY2 | UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2017-03-07 | Elf1 | E74 like ETS transcription factor 1 | Elf1 | E74-like factor 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-01-20 | Elf1 | E74-like factor 1 | E74-like factor 1 (ets domain transcription factor) | Name updated | 1299863 | APPROVED | |
2002-08-07 | Elf1 | E74-like factor 1 (ets domain transcription factor) | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
Note Type | Note | Reference |
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gene_mutations_overexpression | overexpression inhibited Fc epsilonRI alpha chain expression | 632590 |