Elf1 (E74 like ETS transcription factor 1) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Elf1 (E74 like ETS transcription factor 1) Rattus norvegicus
Analyze
Symbol: Elf1
Name: E74 like ETS transcription factor 1
RGD ID: 620697
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in regulation of transcription, DNA-templated. Predicted to localize to nucleus. Orthologous to human ELF1 (E74 like ETS transcription factor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: E74-like factor 1; E74-like factor 1 (ets domain transcription factor); ETS-related transcription factor Elf-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01561,772,544 - 61,868,442 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1561,826,711 - 61,868,343 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01565,436,987 - 65,532,178 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41560,793,794 - 60,835,189 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11560,809,573 - 60,850,969 (+)NCBI
Celera1554,525,607 - 54,566,099 (+)NCBICelera
Cytogenetic Map15q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8756667   PMID:14738763   PMID:14970218   PMID:16002702   PMID:19674970   PMID:19796622  


Genomics

Comparative Map Data
Elf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01561,772,544 - 61,868,442 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1561,826,711 - 61,868,343 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01565,436,987 - 65,532,178 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41560,793,794 - 60,835,189 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11560,809,573 - 60,850,969 (+)NCBI
Celera1554,525,607 - 54,566,099 (+)NCBICelera
Cytogenetic Map15q12NCBI
ELF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1340,931,924 - 41,061,440 (-)EnsemblGRCh38hg38GRCh38
GRCh381340,931,919 - 41,061,386 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371341,506,055 - 41,635,544 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361340,404,164 - 40,454,418 (-)NCBINCBI36hg18NCBI36
Build 341340,404,164 - 40,454,418NCBI
Celera1322,563,467 - 22,650,954 (-)NCBI
Cytogenetic Map13q14.11NCBI
HuRef1322,305,948 - 22,394,169 (-)NCBIHuRef
CHM1_11341,473,692 - 41,561,371 (-)NCBICHM1_1
Elf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391479,718,632 - 79,819,931 (+)NCBIGRCm39mm39
GRCm381479,481,174 - 79,582,491 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1479,481,194 - 79,582,494 (+)EnsemblGRCm38mm10GRCm38
MGSCv371479,881,001 - 79,982,283 (+)NCBIGRCm37mm9NCBIm37
MGSCv361478,215,349 - 78,316,631 (+)NCBImm8
Celera1476,981,316 - 77,082,589 (+)NCBICelera
Cytogenetic Map14D3NCBI
Elf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540450,952,907 - 51,020,229 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540450,952,907 - 51,020,229 (-)NCBIChiLan1.0ChiLan1.0
ELF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11340,726,930 - 40,853,424 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1340,726,930 - 40,774,734 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01322,136,952 - 22,263,523 (-)NCBIMhudiblu_PPA_v0panPan3
ELF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl229,592,978 - 9,670,271 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1229,565,912 - 9,671,017 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Elf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936667449,682 - 553,780 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1125,810,572 - 25,900,802 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11125,772,090 - 25,896,613 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21126,327,352 - 26,385,612 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ELF1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1319,218,161 - 19,303,116 (-)NCBI
ChlSab1.1 Ensembl319,217,771 - 19,303,113 (-)Ensembl
Elf1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474813,987,001 - 14,090,451 (+)NCBI

Position Markers
D15Got206  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01561,834,982 - 61,835,099NCBIRnor6.0
Rnor_5.01565,498,411 - 65,498,528UniSTSRnor5.0
RGSC_v3.41560,802,070 - 60,802,187UniSTSRGSC3.4
Celera1554,533,883 - 54,534,000UniSTS
Cytogenetic Map15q12UniSTS
RH129784  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01561,866,473 - 61,866,657NCBIRnor6.0
Rnor_5.01565,530,209 - 65,530,393UniSTSRnor5.0
RGSC_v3.41560,834,313 - 60,834,497UniSTSRGSC3.4
Celera1554,565,223 - 54,565,407UniSTS
Cytogenetic Map15q12UniSTS
RH 3.4 Map15460.5UniSTS
U19617  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01561,867,694 - 61,867,760NCBIRnor6.0
Rnor_5.01565,531,430 - 65,531,496UniSTSRnor5.0
RGSC_v3.41560,835,534 - 60,835,600UniSTSRGSC3.4
Celera1554,566,444 - 54,566,510UniSTS
Cytogenetic Map15q12UniSTS
RH138647  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01561,867,957 - 61,868,172NCBIRnor6.0
Rnor_5.01565,531,693 - 65,531,908UniSTSRnor5.0
RGSC_v3.41560,835,797 - 60,836,012UniSTSRGSC3.4
Celera1554,566,707 - 54,566,922UniSTS
Cytogenetic Map15q12UniSTS
RH 3.4 Map15459.3UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15162301382Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151549236072568189Rat
9590272Scort14Serum corticosterone level QTL 142.780.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)151698090761980907Rat
8694427Bw163Body weight QTL 1634.820.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)151698090761980907Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151724964162249641Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151724964162249641Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151724964162249641Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151809320881255430Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151851391388036354Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1526381041106550657Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1526381041106550657Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1526381041106550657Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152870974173709741Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)153321910189640841Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)153321910189640841Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)153321910189640841Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)153321910189640841Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)153321910189640841Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)153948079762596410Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153974955779033707Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153974955779033707Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)154106809486068094Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1543097470106550657Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155752897081263988Rat
2317050Aia24Adjuvant induced arthritis QTL 242.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)155965115181255430Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)1561447766106447766Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:328
Count of miRNA genes:187
Interacting mature miRNAs:218
Transcripts:ENSRNOT00000068269
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 30 47 31 19 31 35 34 11
Low 13 10 10 10 8 11 74 7 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAHX01084124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB030216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB030217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB046531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC123280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB782606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000068269   ⟹   ENSRNOP00000060815
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1561,826,711 - 61,868,343 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079417   ⟹   ENSRNOP00000070086
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1561,826,937 - 61,866,924 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000084005   ⟹   ENSRNOP00000072421
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1561,826,937 - 61,866,924 (+)Ensembl
RefSeq Acc Id: NM_053520   ⟹   NP_445972
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01561,826,706 - 61,867,349 (+)NCBI
Rnor_5.01565,436,987 - 65,532,178 (+)NCBI
RGSC_v3.41560,793,794 - 60,835,189 (+)RGD
Celera1554,525,607 - 54,566,099 (+)RGD
Sequence:
RefSeq Acc Id: XM_006252347   ⟹   XP_006252409
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01561,802,451 - 61,868,442 (+)NCBI
Rnor_5.01565,436,987 - 65,532,178 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252348   ⟹   XP_006252410
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01561,772,544 - 61,868,442 (+)NCBI
Rnor_5.01565,436,987 - 65,532,178 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252349   ⟹   XP_006252411
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01561,802,451 - 61,868,442 (+)NCBI
Rnor_5.01565,436,987 - 65,532,178 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252352   ⟹   XP_006252414
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01561,825,926 - 61,868,442 (+)NCBI
Rnor_5.01565,436,987 - 65,532,178 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252354   ⟹   XP_006252416
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01561,802,451 - 61,868,442 (+)NCBI
Rnor_5.01565,436,987 - 65,532,178 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770898   ⟹   XP_008769120
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01561,802,451 - 61,868,442 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770899   ⟹   XP_008769121
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01561,806,149 - 61,868,442 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770901   ⟹   XP_008769123
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01561,802,451 - 61,868,442 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770902   ⟹   XP_008769124
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01561,802,451 - 61,868,442 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770903   ⟹   XP_008769125
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01561,802,451 - 61,868,442 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599811   ⟹   XP_017455300
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01561,772,544 - 61,868,442 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_445972   ⟸   NM_053520
- UniProtKB: G3V9V2 (UniProtKB/TrEMBL),   Q9EQY2 (UniProtKB/TrEMBL),   Q9EQY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252410   ⟸   XM_006252348
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006252411   ⟸   XM_006252349
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006252409   ⟸   XM_006252347
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006252416   ⟸   XM_006252354
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006252414   ⟸   XM_006252352
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008769120   ⟸   XM_008770898
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008769123   ⟸   XM_008770901
- Peptide Label: isoform X2
- UniProtKB: G3V9V2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769124   ⟸   XM_008770902
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008769125   ⟸   XM_008770903
- Peptide Label: isoform X4
- UniProtKB: Q9EQY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769121   ⟸   XM_008770899
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017455300   ⟸   XM_017599811
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000070086   ⟸   ENSRNOT00000079417
RefSeq Acc Id: ENSRNOP00000060815   ⟸   ENSRNOT00000068269
RefSeq Acc Id: ENSRNOP00000072421   ⟸   ENSRNOT00000084005
Protein Domains
ETS

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620697 AgrOrtholog
Ensembl Genes ENSRNOG00000011762 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000060815 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000070086 UniProtKB/TrEMBL
  ENSRNOP00000072421 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068269 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000079417 UniProtKB/TrEMBL
  ENSRNOT00000084005 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro Ets UniProtKB/TrEMBL
  TF_Elf-1_N UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report rno:85424 UniProtKB/TrEMBL
NCBI Gene 85424 ENTREZGENE
Pfam Elf-1_N UniProtKB/TrEMBL
  Ets UniProtKB/TrEMBL
PhenoGen Elf1 PhenoGen
PRINTS ETSDOMAIN UniProtKB/TrEMBL
PROSITE ETS_DOMAIN_1 UniProtKB/TrEMBL
  ETS_DOMAIN_2 UniProtKB/TrEMBL
  ETS_DOMAIN_3 UniProtKB/TrEMBL
SMART ETS UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniGene Rn.98640 ENTREZGENE
UniProt G3V9V2 ENTREZGENE, UniProtKB/TrEMBL
  Q9EQY1_RAT UniProtKB/TrEMBL
  Q9EQY2 ENTREZGENE, UniProtKB/TrEMBL
  Q9EQY3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-07 Elf1  E74 like ETS transcription factor 1  Elf1  E74-like factor 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Elf1  E74-like factor 1    E74-like factor 1 (ets domain transcription factor)  Name updated 1299863 APPROVED
2002-08-07 Elf1  E74-like factor 1 (ets domain transcription factor)      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_mutations_overexpression overexpression inhibited Fc epsilonRI alpha chain expression 632590