Gpm6b (glycoprotein m6b) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gpm6b (glycoprotein m6b) Rattus norvegicus
Analyze
Symbol: Gpm6b
Name: glycoprotein m6b
RGD ID: 620580
Description: Predicted to be a structural constituent of myelin sheath. Predicted to be involved in several processes, including negative regulation of protein localization to cell surface; neurogenesis; and positive regulation of bone mineralization. Predicted to be located in membrane. Predicted to be active in membrane raft; myelin sheath; and plasma membrane. Orthologous to human GPM6B (glycoprotein M6B); INTERACTS WITH 3,3',4,4',5-pentachlorobiphenyl; ammonium chloride; astemizole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: M6b; neuronal membrane glycoprotein M6-b; rhombencephalic expression protein-29 kDa; Rhombex-29
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X31,689,485 - 31,836,199 (-)NCBIGRCr8
mRatBN7.2X28,057,788 - 28,204,409 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX28,059,450 - 28,204,211 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX29,094,697 - 29,135,958 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X32,529,934 - 32,571,264 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X28,709,337 - 28,750,598 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X29,604,607 - 29,751,174 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX29,607,075 - 29,648,403 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X29,997,897 - 30,145,125 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X48,746,584 - 48,788,414 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X48,800,052 - 48,841,883 (-)NCBI
CeleraX28,432,966 - 28,474,260 (-)NCBICelera
Cytogenetic MapXq13-q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6alpha-methylprednisolone  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
arsenous acid  (ISO)
astemizole  (EXP)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bexarotene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
CGP 52608  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
decabromodiphenyl ether  (EXP)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diquat  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
etoposide  (ISO)
folic acid  (ISO)
fucoxanthin  (ISO)
furan  (EXP)
genistein  (ISO)
glucose  (ISO)
glycidol  (EXP)
indometacin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
miconazole  (ISO)
N-nitrosodiethylamine  (EXP)
nickel sulfate  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
prednisolone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium aurothiomalate  (ISO)
sulforaphane  (ISO)
temozolomide  (ISO)
testosterone enanthate  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
xylitol  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane raft  (IBA,IEA,ISO,ISS)
myelin sheath  (IBA)
plasma membrane  (IBA,IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Rhombex-29, a novel gene of the PLP/DM20-M6 family cloned from rat medulla oblongata by differential display. Shimokawa N and Miura M, J Neurosci Res 2000 Oct 1;62(1):1-8.
7. Molecular cloning of M6: identification of a PLP/DM20 gene family. Yan Y, etal., Neuron 1993 Sep;11(3):423-31.
Additional References at PubMed
PMID:18581270   PMID:21638316   PMID:22871113   PMID:29282769  


Genomics

Comparative Map Data
Gpm6b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X31,689,485 - 31,836,199 (-)NCBIGRCr8
mRatBN7.2X28,057,788 - 28,204,409 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX28,059,450 - 28,204,211 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX29,094,697 - 29,135,958 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X32,529,934 - 32,571,264 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X28,709,337 - 28,750,598 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X29,604,607 - 29,751,174 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX29,607,075 - 29,648,403 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X29,997,897 - 30,145,125 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X48,746,584 - 48,788,414 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X48,800,052 - 48,841,883 (-)NCBI
CeleraX28,432,966 - 28,474,260 (-)NCBICelera
Cytogenetic MapXq13-q14NCBI
GPM6B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X13,770,939 - 13,938,638 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX13,770,939 - 13,938,638 (-)EnsemblGRCh38hg38GRCh38
GRCh37X13,789,058 - 13,956,757 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X13,698,983 - 13,866,752 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X13,551,753 - 13,594,971NCBI
CeleraX17,906,144 - 18,072,735 (-)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX11,546,522 - 11,713,553 (-)NCBIHuRef
CHM1_1X13,819,880 - 13,987,265 (-)NCBICHM1_1
T2T-CHM13v2.0X13,352,374 - 13,518,889 (-)NCBIT2T-CHM13v2.0
Gpm6b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X165,021,911 - 165,172,028 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX165,021,907 - 165,171,984 (+)EnsemblGRCm39 Ensembl
GRCm38X166,238,943 - 166,389,033 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX166,238,911 - 166,388,988 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X162,676,875 - 162,826,965 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X161,583,077 - 161,733,093 (+)NCBIMGSCv36mm8
CeleraX149,417,598 - 149,568,704 (+)NCBICelera
Cytogenetic MapXF5NCBI
cM MapX76.86NCBI
Gpm6b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555194,287,026 - 4,432,188 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555194,287,203 - 4,432,188 (+)NCBIChiLan1.0ChiLan1.0
GPM6B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X15,550,218 - 15,717,075 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X15,553,884 - 15,720,741 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X6,377,913 - 6,544,826 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X13,666,106 - 13,711,964 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX13,666,192 - 13,711,964 (-)Ensemblpanpan1.1panPan2
GPM6B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X10,214,889 - 10,375,151 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX10,214,933 - 10,374,837 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX10,189,219 - 10,348,724 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X10,173,111 - 10,333,175 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX10,173,139 - 10,333,044 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X10,241,423 - 10,401,085 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X10,233,032 - 10,392,887 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X10,259,139 - 10,419,234 (-)NCBIUU_Cfam_GSD_1.0
Gpm6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X3,332,859 - 3,496,039 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364703,332,859 - 3,496,615 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364703,332,856 - 3,496,178 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPM6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX10,430,301 - 10,582,354 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X10,429,496 - 10,582,768 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X11,383,146 - 11,536,257 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPM6B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X12,258,386 - 12,429,883 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605614,075,770 - 14,244,396 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpm6b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624882220,362 - 374,912 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624882220,267 - 374,912 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gpm6b
522 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:547
Count of miRNA genes:258
Interacting mature miRNAs:325
Transcripts:ENSRNOT00000006777
Prediction methods:Microtar, Miranda, Pita, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
1598873Memor2Memory QTL 22.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)X2099094741052531Rat
2290375Gluco34Glucose level QTL 342.75blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X2099094741203591Rat

Markers in Region
DXRat108  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X28,095,363 - 28,095,542 (+)MAPPERmRatBN7.2
Rnor_6.0X29,642,179 - 29,642,357NCBIRnor6.0
Rnor_5.0X30,035,541 - 30,035,719UniSTSRnor5.0
RGSC_v3.4X48,782,189 - 48,782,368RGDRGSC3.4
RGSC_v3.4X48,782,190 - 48,782,368UniSTSRGSC3.4
RGSC_v3.1X48,835,659 - 48,835,837RGD
CeleraX28,468,036 - 28,468,214UniSTS
RH 3.4 MapX375.1RGD
RH 3.4 MapX375.1UniSTS
RH 2.0 Map21293.4RGD
FHH x ACI MapX12.36RGD
Cytogenetic MapXq21UniSTS
RH133686  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X28,060,464 - 28,060,666 (+)MAPPERmRatBN7.2
Rnor_6.0X29,607,284 - 29,607,485NCBIRnor6.0
Rnor_5.0X30,000,574 - 30,000,775UniSTSRnor5.0
RGSC_v3.4X48,746,793 - 48,746,994UniSTSRGSC3.4
CeleraX28,433,175 - 28,433,376UniSTS
RH 3.4 MapX360.2UniSTS
Cytogenetic MapXq21UniSTS
RH138360  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X28,064,943 - 28,065,063 (+)MAPPERmRatBN7.2
Rnor_6.0X29,611,763 - 29,611,882NCBIRnor6.0
Rnor_5.0X30,005,053 - 30,005,172UniSTSRnor5.0
RGSC_v3.4X48,751,272 - 48,751,391UniSTSRGSC3.4
CeleraX28,437,654 - 28,437,773UniSTS
RH 3.4 MapX362.0UniSTS
Cytogenetic MapXq21UniSTS
GPM6B  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X28,074,510 - 28,074,676 (+)MAPPERmRatBN7.2
Rnor_6.0X29,621,329 - 29,621,494NCBIRnor6.0
Rnor_5.0X30,014,619 - 30,014,784UniSTSRnor5.0
RGSC_v3.4X48,760,838 - 48,761,003UniSTSRGSC3.4
CeleraX28,447,224 - 28,447,389UniSTS
Cytogenetic MapXq21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 18 11 4 4 74 22 32 11 4
Low 3 25 56 40 8 40 4 7 13 9 4
Below cutoff 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_138846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008773151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB036421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC112090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC130009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000006777   ⟹   ENSRNOP00000006777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX28,060,256 - 28,101,588 (-)Ensembl
Rnor_6.0 EnsemblX29,607,075 - 29,648,403 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000086721   ⟹   ENSRNOP00000070988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX28,059,450 - 28,101,834 (-)Ensembl
Rnor_6.0 EnsemblX29,609,377 - 29,648,359 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103098   ⟹   ENSRNOP00000097365
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX28,060,255 - 28,204,211 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118568   ⟹   ENSRNOP00000090200
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX28,060,255 - 28,101,834 (-)Ensembl
RefSeq Acc Id: NM_138846   ⟹   NP_620201
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X31,691,909 - 31,733,237 (-)NCBI
mRatBN7.2X28,060,256 - 28,101,588 (-)NCBI
Rnor_6.0X29,607,075 - 29,648,403 (-)NCBI
Rnor_5.0X29,997,897 - 30,145,125 (-)NCBI
RGSC_v3.4X48,746,584 - 48,788,414 (-)RGD
CeleraX28,432,966 - 28,474,260 (-)RGD
Sequence:
RefSeq Acc Id: XM_006256849   ⟹   XP_006256911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X31,689,485 - 31,739,963 (-)NCBI
mRatBN7.2X28,057,788 - 28,101,742 (-)NCBI
Rnor_6.0X29,604,607 - 29,648,557 (-)NCBI
Rnor_5.0X29,997,897 - 30,145,125 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006256850   ⟹   XP_006256912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X31,689,485 - 31,739,963 (-)NCBI
mRatBN7.2X28,057,788 - 28,101,742 (-)NCBI
Rnor_6.0X29,606,624 - 29,648,557 (-)NCBI
Rnor_5.0X29,997,897 - 30,145,125 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006256851   ⟹   XP_006256913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X31,689,485 - 31,739,963 (-)NCBI
mRatBN7.2X28,057,788 - 28,101,622 (-)NCBI
Rnor_6.0X29,604,607 - 29,648,512 (-)NCBI
Rnor_5.0X29,997,897 - 30,145,125 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008773151   ⟹   XP_008771373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X31,689,485 - 31,835,956 (-)NCBI
mRatBN7.2X28,057,788 - 28,204,142 (-)NCBI
Rnor_6.0X29,604,607 - 29,750,943 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601904   ⟹   XP_017457393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X31,689,485 - 31,836,199 (-)NCBI
mRatBN7.2X28,057,788 - 28,204,409 (-)NCBI
Rnor_6.0X29,604,607 - 29,751,174 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039099441   ⟹   XP_038955369
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X31,689,485 - 31,729,252 (-)NCBI
mRatBN7.2X28,057,788 - 28,097,603 (-)NCBI
RefSeq Acc Id: XM_039099442   ⟹   XP_038955370
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X31,694,222 - 31,739,963 (-)NCBI
mRatBN7.2X28,062,569 - 28,101,742 (-)NCBI
RefSeq Acc Id: XM_063279770   ⟹   XP_063135840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X31,689,485 - 31,729,262 (-)NCBI
RefSeq Acc Id: XM_063279771   ⟹   XP_063135841
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X31,689,485 - 31,835,827 (-)NCBI
RefSeq Acc Id: XM_063279772   ⟹   XP_063135842
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X31,689,485 - 31,739,963 (-)NCBI
RefSeq Acc Id: XM_063279773   ⟹   XP_063135843
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X31,694,213 - 31,835,852 (-)NCBI
RefSeq Acc Id: NP_620201   ⟸   NM_138846
- UniProtKB: Q9JJK1 (UniProtKB/Swiss-Prot),   E9PSV8 (UniProtKB/TrEMBL),   A6K2I9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256911   ⟸   XM_006256849
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JZB8 (UniProtKB/TrEMBL),   A6K2I7 (UniProtKB/TrEMBL),   A6K2I8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256913   ⟸   XM_006256851
- Peptide Label: isoform X7
- UniProtKB: A6K2I6 (UniProtKB/TrEMBL),   A6K2I8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256912   ⟸   XM_006256850
- Peptide Label: isoform X3
- UniProtKB: Q9JJK1 (UniProtKB/Swiss-Prot),   A0A8I6A9L3 (UniProtKB/TrEMBL),   A6K2J0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008771373   ⟸   XM_008773151
- Peptide Label: isoform X9
- UniProtKB: A6K2I4 (UniProtKB/TrEMBL),   A6K2I8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457393   ⟸   XM_017601904
- Peptide Label: isoform X4
- UniProtKB: A6K2I8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000006777   ⟸   ENSRNOT00000006777
RefSeq Acc Id: ENSRNOP00000070988   ⟸   ENSRNOT00000086721
RefSeq Acc Id: XP_038955369   ⟸   XM_039099441
- Peptide Label: isoform X2
- UniProtKB: A6K2I8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955370   ⟸   XM_039099442
- Peptide Label: isoform X6
- UniProtKB: Q9JJK1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSRNOP00000097365   ⟸   ENSRNOT00000103098
RefSeq Acc Id: ENSRNOP00000090200   ⟸   ENSRNOT00000118568
RefSeq Acc Id: XP_063135841   ⟸   XM_063279771
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063135842   ⟸   XM_063279772
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063135840   ⟸   XM_063279770
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063135843   ⟸   XM_063279773
- Peptide Label: isoform X11

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JJK1-F1-model_v2 AlphaFold Q9JJK1 1-265 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701797
Promoter ID:EPDNEW_R12314
Type:initiation region
Name:Gpm6b_1
Description:glycoprotein m6b
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X29,648,350 - 29,648,410EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620580 AgrOrtholog
BioCyc Gene G2FUF-2607 BioCyc
Ensembl Genes ENSRNOG00000004613 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006777 ENTREZGENE
  ENSRNOT00000006777.6 UniProtKB/TrEMBL
  ENSRNOT00000086721.2 UniProtKB/TrEMBL
  ENSRNOT00000103098.1 UniProtKB/TrEMBL
  ENSRNOT00000118568.1 UniProtKB/TrEMBL
InterPro Myelin_PLP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myelin_PLP_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:192179 UniProtKB/Swiss-Prot
NCBI Gene 192179 ENTREZGENE
PANTHER NEURONAL MEMBRANE GLYCOPROTEIN M6-B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11683 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Myelin_PLP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gpm6b PhenoGen
PRINTS MYELINPLP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE MYELIN_PLP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MYELIN_PLP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004613 RatGTEx
SMART PLP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JZB8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A9L3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GM14_RAT UniProtKB/TrEMBL
  A6K2I4 ENTREZGENE, UniProtKB/TrEMBL
  A6K2I6 ENTREZGENE, UniProtKB/TrEMBL
  A6K2I7 ENTREZGENE, UniProtKB/TrEMBL
  A6K2I8 ENTREZGENE, UniProtKB/TrEMBL
  A6K2I9 ENTREZGENE, UniProtKB/TrEMBL
  A6K2J0 ENTREZGENE, UniProtKB/TrEMBL
  E9PSV8 ENTREZGENE, UniProtKB/TrEMBL
  GPM6B_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Gpm6b  glycoprotein m6b      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Gpm6b  glycoprotein m6b      Symbol and Name status set to provisional 70820 PROVISIONAL