Faim (Fas apoptotic inhibitory molecule) - Rat Genome Database

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Gene: Faim (Fas apoptotic inhibitory molecule) Rattus norvegicus
Analyze
Symbol: Faim
Name: Fas apoptotic inhibitory molecule
RGD ID: 620572
Description: Involved in I-kappaB kinase/NF-kappaB signaling and positive regulation of neurogenesis. Predicted to be located in cytoplasm. Orthologous to human FAIM (Fas apoptotic inhibitory molecule); INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: fas apoptotic inhibitory molecule 1; LOC100362113; rFAIM
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2899,543,877 - 99,569,499 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl899,542,405 - 99,560,562 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8105,210,396 - 105,226,216 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.08103,409,696 - 103,425,516 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.08101,252,200 - 101,268,021 (+)NCBIRnor_WKY
Rnor_6.08107,225,119 - 107,247,228 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8107,225,212 - 107,241,224 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl8106,816,152 - 106,827,580 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08106,649,714 - 106,671,537 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.489,522,803 - 9,539,269 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18103,854,182 - 103,869,924 (+)NCBI
Celera898,949,776 - 98,965,494 (+)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. A novel gene coding for a Fas apoptosis inhibitory molecule (FAIM) isolated from inducibly Fas-resistant B lymphocytes. Schneider TJ, etal., J Exp Med 1999 Mar 15;189(6):949-56.
6. The death receptor antagonist FAIM promotes neurite outgrowth by a mechanism that depends on ERK and NF-kapp B signaling. Sole C, etal., J Cell Biol 2004 Nov 8;167(3):479-92. Epub 2004 Nov 1.
Additional References at PubMed
PMID:24305822   PMID:28383554  


Genomics

Comparative Map Data
Faim
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2899,543,877 - 99,569,499 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl899,542,405 - 99,560,562 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8105,210,396 - 105,226,216 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.08103,409,696 - 103,425,516 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.08101,252,200 - 101,268,021 (+)NCBIRnor_WKY
Rnor_6.08107,225,119 - 107,247,228 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8107,225,212 - 107,241,224 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl8106,816,152 - 106,827,580 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08106,649,714 - 106,671,537 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.489,522,803 - 9,539,269 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18103,854,182 - 103,869,924 (+)NCBI
Celera898,949,776 - 98,965,494 (+)NCBICelera
Cytogenetic Map8q31NCBI
FAIM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383138,608,771 - 138,633,376 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl3138,608,606 - 138,633,376 (+)EnsemblGRCh38hg38GRCh38
GRCh373138,327,613 - 138,352,218 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363139,810,232 - 139,834,908 (+)NCBINCBI36Build 36hg18NCBI36
Celera3136,752,476 - 136,777,527 (+)NCBICelera
Cytogenetic Map3q22.3NCBI
HuRef3135,702,306 - 135,726,894 (+)NCBIHuRef
CHM1_13138,291,316 - 138,316,081 (+)NCBICHM1_1
T2T-CHM13v2.03141,349,369 - 141,374,071 (+)NCBIT2T-CHM13v2.0
Faim
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39998,868,426 - 98,884,076 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl998,868,426 - 98,884,074 (+)EnsemblGRCm39 Ensembl
GRCm38998,986,373 - 99,002,019 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl998,986,373 - 99,002,021 (+)EnsemblGRCm38mm10GRCm38
MGSCv37998,886,792 - 98,902,438 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36998,795,725 - 98,811,370 (+)NCBIMGSCv36mm8
Celera998,524,144 - 98,539,790 (+)NCBICelera
Cytogenetic Map9E3.3NCBI
Faim
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955501447,094 - 461,396 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955501447,085 - 459,691 (-)NCBIChiLan1.0ChiLan1.0
FAIM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13143,243,585 - 143,267,787 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3143,243,675 - 143,267,787 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03135,639,242 - 135,664,449 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
FAIM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12334,807,093 - 34,822,577 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2334,807,249 - 34,822,244 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2334,800,789 - 34,829,125 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02335,349,544 - 35,378,112 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2335,349,705 - 35,364,480 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12335,030,132 - 35,058,685 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02335,096,065 - 35,124,631 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02335,346,264 - 35,374,614 (+)NCBIUU_Cfam_GSD_1.0
Faim
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560274,103,727 - 74,123,257 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936540843,463 - 863,029 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAIM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1379,397,931 - 79,411,905 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11379,397,647 - 79,411,917 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21387,082,125 - 87,092,596 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAIM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11551,906,832 - 51,932,145 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1551,905,188 - 51,921,162 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604124,911,027 - 24,935,973 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Faim
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473015,114,558 - 15,145,027 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH132415  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2899,559,527 - 99,559,737 (+)MAPPERmRatBN7.2
Rnor_6.08107,240,768 - 107,240,977NCBIRnor6.0
Rnor_6.08106,827,098 - 106,827,307NCBIRnor6.0
Rnor_5.08106,665,077 - 106,665,286UniSTSRnor5.0
Rnor_5.08106,261,481 - 106,261,690UniSTSRnor5.0
RGSC_v3.48103,850,284 - 103,850,493UniSTSRGSC3.4
RGSC_v3.429,539,084 - 9,539,293UniSTSRGSC3.4
Celera898,965,309 - 98,965,518UniSTS
RH 3.4 Map81040.19UniSTS
Cytogenetic Map8q31UniSTS
BE112969  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2899,549,810 - 99,550,237 (+)MAPPERmRatBN7.2
Rnor_6.08107,231,054 - 107,231,480NCBIRnor6.0
Rnor_6.08106,817,384 - 106,817,810NCBIRnor6.0
Rnor_5.08106,655,640 - 106,656,066UniSTSRnor5.0
Rnor_5.08106,251,767 - 106,252,193UniSTSRnor5.0
RGSC_v3.48103,840,570 - 103,840,996UniSTSRGSC3.4
RGSC_v3.429,529,370 - 9,529,796UniSTSRGSC3.4
Celera898,955,598 - 98,956,024UniSTS
RH 3.4 Map81051.79UniSTS
Cytogenetic Map8q31UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1578755Pur5Proteinuria QTL 53.30.0001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088624Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:498
Count of miRNA genes:164
Interacting mature miRNAs:188
Transcripts:ENSRNOT00000045329, ENSRNOT00000045821, ENSRNOT00000046832, ENSRNOT00000047613
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 3 2 10 9 4 9 9 7 26 4
Below cutoff 1 44 46 29 20 29 2 4 71 30 20 13 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000045329   ⟹   ENSRNOP00000038960
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl8107,225,212 - 107,240,953 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000045821   ⟹   ENSRNOP00000039749
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl899,542,405 - 99,560,562 (+)Ensembl
Rnor_6.0 Ensembl8107,229,832 - 107,241,224 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000047613   ⟹   ENSRNOP00000049149
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl899,543,912 - 99,560,562 (+)Ensembl
Rnor_6.0 Ensembl8106,816,152 - 106,827,580 (+)Ensembl
RefSeq Acc Id: NM_080895   ⟹   NP_543171
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2899,543,969 - 99,559,713 (+)NCBI
Rnor_6.08107,225,212 - 107,240,953 (+)NCBI
Rnor_5.08106,649,714 - 106,671,537 (+)NCBI
RGSC_v3.489,522,803 - 9,539,269 (+)RGD
Celera898,949,776 - 98,965,494 (+)RGD
Sequence:
RefSeq Acc Id: XM_002729959   ⟹   XP_002730005
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2899,543,882 - 99,559,985 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243611   ⟹   XP_006243673
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2899,544,389 - 99,559,985 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596121   ⟹   XP_017451610
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2899,543,877 - 99,569,499 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_543171   ⟸   NM_080895
- UniProtKB: Q8R5H8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000039749   ⟸   ENSRNOT00000045821
RefSeq Acc Id: ENSRNOP00000049149   ⟸   ENSRNOT00000047613
RefSeq Acc Id: ENSRNOP00000038960   ⟸   ENSRNOT00000045329
RefSeq Acc Id: XP_017451610   ⟸   XM_017596121
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_002730005   ⟸   XM_002729959
- Peptide Label: isoform X1
- UniProtKB: Q8VHR4 (UniProtKB/Swiss-Prot),   Q8R5H8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006243673   ⟸   XM_006243611
- Peptide Label: isoform X1
- UniProtKB: Q8VHR4 (UniProtKB/Swiss-Prot),   Q8R5H8 (UniProtKB/Swiss-Prot)
- Sequence:

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R5H8-F1-model_v2 AlphaFold Q8R5H8 1-201 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696205
Promoter ID:EPDNEW_R6730
Type:multiple initiation site
Name:Faim_1
Description:Fas apoptotic inhibitory molecule
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08107,225,164 - 107,225,224EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620572 AgrOrtholog
BioCyc Gene G2FUF-29407 BioCyc
Ensembl Genes ENSRNOG00000030069 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000030463 Ensembl
Ensembl Protein ENSRNOP00000039749 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000049149 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000045821 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000047613 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.40.128.180 UniProtKB/Swiss-Prot
InterPro FAIM1 UniProtKB/Swiss-Prot
  FAIM1_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:140930 UniProtKB/Swiss-Prot
NCBI Gene 140930 ENTREZGENE
PANTHER PTHR13088 UniProtKB/Swiss-Prot
Pfam FAIM1 UniProtKB/Swiss-Prot
PhenoGen Faim PhenoGen
UniProt FAIM1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q8VHR4 ENTREZGENE
UniProt Secondary Q8VHR4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-27 Faim  Fas apoptotic inhibitory molecule  LOC100362113  Fas apoptotic inhibitory molecule  Data Merged 737654 APPROVED
2010-05-05 LOC100362113  Fas apoptotic inhibitory molecule      Symbol and Name status set to provisional 70820 PROVISIONAL
2004-09-10 Faim  Fas apoptotic inhibitory molecule      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Faim  Fas apoptotic inhibitory molecule      Symbol and Name status set to provisional 70820 PROVISIONAL