Chek1 (checkpoint kinase 1) - Rat Genome Database

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Gene: Chek1 (checkpoint kinase 1) Rattus norvegicus
Analyze
Symbol: Chek1
Name: checkpoint kinase 1
RGD ID: 620545
Description: Enables protein kinase activity. Involved in several processes, including DNA damage induced protein phosphorylation; cellular response to caffeine; and negative regulation of G2/M transition of mitotic cell cycle. Predicted to be located in several cellular components, including centrosome; chromosome; and nucleoplasm. Predicted to be part of protein-containing complex. Predicted to be active in nucleus. Predicted to colocalize with chromosome, telomeric region. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human CHEK1 (checkpoint kinase 1); PARTICIPATES IN G2/M DNA damage checkpoint pathway; p53 signaling pathway; cell cycle pathway, mitotic; INTERACTS WITH (+)-schisandrin B; 1,3-dinitrobenzene; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: checkpoint kinase 1 homolog; checkpoint kinase 1 homolog (S. pombe); checkpoint kinase-1; CHK1 checkpoint homolog; CHK1 checkpoint homolog (S. pombe); serine/threonine-protein kinase Chk1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Chek1_v2   Chek1_v1  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2836,420,565 - 36,443,477 (-)NCBI
Rnor_6.0 Ensembl839,181,163 - 39,243,882 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0839,181,162 - 39,201,588 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0839,184,020 - 39,204,446 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4837,954,322 - 37,974,748 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1837,963,088 - 37,983,514 (-)NCBI
Celera838,000,251 - 38,020,582 (+)NCBICelera
Cytogenetic Map8q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP,ISO)
1,1-dichloroethene  (ISO)
1,3-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,6-di-tert-butyl-4-methylphenol  (ISO)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5-triiodo-L-thyronine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-methyladenine  (ISO)
4-hydroxynon-2-enal  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-(cyclohexylmethoxy)-5-nitrosopyrimidine-2,4-diamine  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
anthocyanin  (ISO)
anthracene-1,8,9-triol  (ISO)
aphidicolin  (ISO)
aristolochic acid  (ISO)
arsenous acid  (EXP,ISO)
artesunate  (ISO)
atrazine  (ISO)
auraptene  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
berberine  (ISO)
biphenyl-4-amine  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Brevetoxin B  (ISO)
busulfan  (ISO)
cadmium atom  (ISO)
caffeine  (ISO)
camptothecin  (ISO)
carbamazepine  (ISO)
carmustine  (ISO)
catechol  (ISO)
cefaloridine  (EXP)
chlorpyrifos  (ISO)
cholic acid  (ISO)
choline  (ISO)
ciprofloxacin  (EXP)
cisplatin  (EXP,ISO)
clofarabine  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
Diallyl sulfide  (ISO)
diarsenic trioxide  (EXP,ISO)
dibutyl phthalate  (ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
diepoxybutane  (ISO)
diethyl sulfate  (ISO)
digitoxin  (ISO)
dioscin  (ISO)
doxorubicin  (ISO)
Echimidine  (ISO)
Enterolactone  (ISO)
equol  (ISO)
Estragole  (EXP)
etoposide  (ISO)
fenofibrate  (EXP)
fisetin  (ISO)
flavonoids  (EXP)
floxuridine  (ISO)
flumequine  (ISO)
folic acid  (ISO)
furan  (EXP,ISO)
furosemide  (EXP)
genistein  (ISO)
geraniol  (ISO)
glyphosate  (ISO)
Goe 6976  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
GW 4064  (ISO)
hydrogen peroxide  (ISO)
hydroxyurea  (ISO)
indole-3-methanol  (EXP)
irinotecan  (ISO)
iron dichloride  (ISO)
iron trichloride  (ISO)
isoflurane  (EXP)
kaempferol  (ISO)
L-methionine  (ISO)
Lasiocarpine  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (EXP)
leptomycin B  (ISO)
lovastatin  (EXP,ISO)
MeIQx  (ISO)
melphalan  (ISO)
menadione  (ISO)
metformin  (ISO)
methapyrilene  (EXP)
methotrexate  (ISO)
methyl isocyanate  (ISO)
methylmercury chloride  (ISO)
Mezerein  (ISO)
mifepristone  (ISO)
mitomycin C  (ISO)
monocrotaline  (ISO)
N-acetyl-L-cysteine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
nickel atom  (ISO)
nimustine  (ISO)
nocodazole  (ISO)
O-methyleugenol  (EXP)
ochratoxin A  (EXP,ISO)
octamethylcyclotetrasiloxane  (ISO)
olaparib  (ISO)
oxaliplatin  (EXP)
oxfendazole  (EXP)
ozone  (ISO)
p-anisidine  (ISO)
paclitaxel  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
PF-00477736  (ISO)
phenobarbital  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (ISO)
platinum  (ISO)
platinum(0)  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (EXP,ISO)
promethazine  (EXP)
propiconazole  (ISO)
Ptaquiloside  (ISO)
quercetin  (ISO)
resveratrol  (EXP,ISO)
riddelliine  (ISO)
rimonabant  (ISO)
rotenone  (ISO)
saccharin  (ISO)
silver(1+) nitrate  (ISO)
sodium arsenite  (ISO)
sodium nitrite  (ISO)
stavudine  (ISO)
sterigmatocystin  (ISO)
styrene oxide  (ISO)
succimer  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
usnic acid  (ISO)
valproic acid  (ISO)
vemurafenib  (ISO)
versicolorin A  (ISO)
wortmannin  (ISO)
Xanthatin  (ISO)
zidovudine  (ISO)
zinc dichloride  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:9382850   PMID:10859163   PMID:10859164   PMID:11555636   PMID:11790307   PMID:12477932   PMID:12529385   PMID:15149599   PMID:15311285   PMID:15364958   PMID:15389625   PMID:15665856  
PMID:16963448   PMID:18243098   PMID:19593445   PMID:19716789   PMID:20495005   PMID:20932473   PMID:21336968   PMID:21737879   PMID:22024163   PMID:23028632   PMID:23432726   PMID:23580065  
PMID:23861943   PMID:24158981   PMID:25880015   PMID:26296656  


Genomics

Comparative Map Data
Chek1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2836,420,565 - 36,443,477 (-)NCBI
Rnor_6.0 Ensembl839,181,163 - 39,243,882 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0839,181,162 - 39,201,588 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0839,184,020 - 39,204,446 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4837,954,322 - 37,974,748 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1837,963,088 - 37,983,514 (-)NCBI
Celera838,000,251 - 38,020,582 (+)NCBICelera
Cytogenetic Map8q21NCBI
CHEK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11125,625,163 - 125,676,255 (+)EnsemblGRCh38hg38GRCh38
GRCh3811125,624,910 - 125,676,255 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711125,495,031 - 125,546,150 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611125,001,547 - 125,030,847 (+)NCBINCBI36hg18NCBI36
Build 3411125,001,546 - 125,030,847NCBI
Celera11122,655,346 - 122,706,400 (+)NCBI
Cytogenetic Map11q24.2NCBI
HuRef11121,436,397 - 121,487,529 (+)NCBIHuRef
CHM1_111125,381,155 - 125,432,283 (+)NCBICHM1_1
Chek1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39936,619,778 - 36,637,954 (-)NCBIGRCm39mm39
GRCm39 Ensembl936,619,778 - 36,638,361 (-)Ensembl
GRCm38936,708,482 - 36,726,658 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl936,708,482 - 36,727,065 (-)EnsemblGRCm38mm10GRCm38
MGSCv37936,516,067 - 36,534,243 (-)NCBIGRCm37mm9NCBIm37
MGSCv36936,458,153 - 36,476,298 (-)NCBImm8
Celera933,911,337 - 33,929,618 (-)NCBICelera
Cytogenetic Map9A4NCBI
Chek1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541226,627,606 - 26,650,554 (+)NCBIChiLan1.0ChiLan1.0
CHEK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111124,359,218 - 124,410,385 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11124,359,218 - 124,390,981 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011120,446,352 - 120,478,207 (+)NCBIMhudiblu_PPA_v0panPan3
CHEK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.158,878,511 - 8,910,626 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl58,879,147 - 8,907,669 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha58,923,479 - 8,955,720 (-)NCBI
ROS_Cfam_1.058,821,650 - 8,853,260 (-)NCBI
UMICH_Zoey_3.158,890,756 - 8,922,634 (-)NCBI
UNSW_CanFamBas_1.058,860,679 - 8,892,710 (-)NCBI
UU_Cfam_GSD_1.058,897,288 - 8,929,731 (-)NCBI
Chek1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947107,757,062 - 107,779,783 (+)NCBI
SpeTri2.0NW_0049367432,004,535 - 2,027,287 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHEK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl952,726,885 - 52,790,706 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1952,759,224 - 52,790,878 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2958,411,395 - 58,444,086 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHEK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11116,768,141 - 116,809,557 (+)NCBI
ChlSab1.1 Ensembl1116,767,944 - 116,801,371 (+)Ensembl
Vero_WHO_p1.0NW_0236660439,201,283 - 9,302,468 (-)NCBI
Chek1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249271,609,404 - 1,643,409 (+)NCBI

Position Markers
D8Got46  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2836,439,917 - 36,440,070 (+)MAPPER
Rnor_6.0839,200,513 - 39,200,665NCBIRnor6.0
Rnor_5.0839,203,371 - 39,203,523UniSTSRnor5.0
RGSC_v3.4837,973,671 - 37,973,825RGDRGSC3.4
RGSC_v3.4837,973,673 - 37,973,825UniSTSRGSC3.4
RGSC_v3.1837,982,437 - 37,982,591RGD
Celera838,001,174 - 38,001,326UniSTS
RH 3.4 Map8315.0UniSTS
RH 3.4 Map8315.0RGD
RH 2.0 Map8237.8RGD
Cytogenetic Map8q21UniSTS
D8Got212  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2836,439,954 - 36,440,210 (+)MAPPER
mRatBN7.2836,439,954 - 36,440,077 (+)MAPPER
Rnor_6.0839,200,550 - 39,200,672NCBIRnor6.0
Rnor_6.0839,200,550 - 39,200,805NCBIRnor6.0
Rnor_5.0839,203,408 - 39,203,530UniSTSRnor5.0
Rnor_5.0839,203,408 - 39,203,663UniSTSRnor5.0
RGSC_v3.4837,973,710 - 37,973,965UniSTSRGSC3.4
RGSC_v3.4837,973,709 - 37,973,832RGDRGSC3.4
RGSC_v3.4837,973,710 - 37,973,832UniSTSRGSC3.4
RGSC_v3.1837,982,475 - 37,982,598RGD
Celera838,001,034 - 38,001,289UniSTS
Celera838,001,167 - 38,001,289UniSTS
RH 3.4 Map8320.4RGD
RH 3.4 Map8320.4UniSTS
RH 2.0 Map8250.7RGD
Cytogenetic Map8q21UniSTS
D8Got349  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2836,439,961 - 36,440,080 (+)MAPPER
mRatBN7.2836,439,961 - 36,440,213 (+)MAPPER
Rnor_6.0839,200,557 - 39,200,808NCBIRnor6.0
Rnor_6.0839,200,557 - 39,200,675NCBIRnor6.0
Rnor_5.0839,203,415 - 39,203,666UniSTSRnor5.0
Rnor_5.0839,203,415 - 39,203,533UniSTSRnor5.0
RGSC_v3.4837,973,717 - 37,973,968UniSTSRGSC3.4
RGSC_v3.4837,973,717 - 37,973,835UniSTSRGSC3.4
Celera838,001,031 - 38,001,282UniSTS
Celera838,001,164 - 38,001,282UniSTS
Cytogenetic Map8q21UniSTS
RH142972  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2836,420,891 - 36,421,014 (+)MAPPER
Rnor_6.0839,181,489 - 39,181,611NCBIRnor6.0
Rnor_5.0839,184,347 - 39,184,469UniSTSRnor5.0
RGSC_v3.4837,954,649 - 37,954,771UniSTSRGSC3.4
Celera838,020,133 - 38,020,255UniSTS
RH 3.4 Map8314.2UniSTS
Cytogenetic Map8q21UniSTS
RH136824  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2836,420,835 - 36,420,962 (+)MAPPER
Rnor_6.0839,181,433 - 39,181,559NCBIRnor6.0
Rnor_5.0839,184,291 - 39,184,417UniSTSRnor5.0
RGSC_v3.4837,954,593 - 37,954,719UniSTSRGSC3.4
Celera838,020,185 - 38,020,311UniSTS
RH 3.4 Map8309.4UniSTS
Cytogenetic Map8q21UniSTS
AI230581  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2836,429,656 - 36,429,861 (+)MAPPER
Rnor_6.0839,190,254 - 39,190,458NCBIRnor6.0
Rnor_5.0839,193,112 - 39,193,316UniSTSRnor5.0
RGSC_v3.4837,963,414 - 37,963,618UniSTSRGSC3.4
Celera838,011,379 - 38,011,583UniSTS
RH 3.4 Map8314.2UniSTS
Cytogenetic Map8q21UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8210812847108128Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8210812847108128Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8210812847108128Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8210812847108128Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8736807652368076Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8736807652368076Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8736807652368076Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8873867753738677Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)89531047119211942Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)81038843955388439Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)81038843955388439Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810938911120496129Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81137326757541668Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81137350945712344Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81137350945712344Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81144825156448251Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81144825156448251Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81766655562666555Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)82071759265717592Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)82146491991140553Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)821813070100873963Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)82784149672841496Rat
1359021Bp271Blood pressure QTL 2711.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82816802350708951Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)82986798359908353Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)829867983106526740Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)829867983106526740Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)829867983106526740Rat
2303564Gluco43Glucose level QTL 433blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)83014480075144800Rat
2303572Insul13Insulin level QTL 132blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)83014480075144800Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)83091811258858224Rat
1300146Rf17Renal function QTL 172.9renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)83091811275918112Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)830918112107206309Rat
2302278Gluco36Glucose level QTL 364.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)83220198154065241Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)83220198175971421Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)832888352101374135Rat
70206Alc20Alcohol consumption QTL 202drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)83355866044219353Rat
61337Bp22Blood pressure QTL 225.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83355866046588570Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83355866062857995Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83355866065717592Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83355866065717592Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83355866065717592Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83355866065717592Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83355866065717592Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83355866065717592Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83355866089058369Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83355866089058369Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83355866089058369Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83355866089058369Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)833558660109028082Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)833558660109028082Rat
1578755Pur5Proteinuria QTL 53.30.0001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)833558660109028082Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)833558764113580387Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83504141480041414Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83592559480925594Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:96
Interacting mature miRNAs:117
Transcripts:ENSRNOT00000011226
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 32 57 41 19 41 3 3 74 35 41 11 3
Low 11 5 8 5
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000011226   ⟹   ENSRNOP00000011226
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl839,181,163 - 39,201,588 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000043518   ⟹   ENSRNOP00000040087
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl839,204,218 - 39,243,705 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000082086   ⟹   ENSRNOP00000069884
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl839,198,733 - 39,243,882 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000090161   ⟹   ENSRNOP00000070708
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl839,181,163 - 39,190,457 (-)Ensembl
RefSeq Acc Id: NM_080400   ⟹   NP_536325
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2836,420,565 - 36,440,993 (-)NCBI
Rnor_6.0839,181,162 - 39,201,588 (-)NCBI
Rnor_5.0839,184,020 - 39,204,446 (-)NCBI
RGSC_v3.4837,954,322 - 37,974,748 (-)RGD
Celera838,000,251 - 38,020,582 (+)RGD
Sequence:
RefSeq Acc Id: XM_008766042   ⟹   XP_008764264
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2836,420,565 - 36,441,018 (-)NCBI
Rnor_6.0839,181,162 - 39,201,567 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008766043   ⟹   XP_008764265
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2836,420,565 - 36,440,923 (-)NCBI
Rnor_6.0839,181,162 - 39,201,480 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039080723   ⟹   XP_038936651
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2836,420,565 - 36,440,917 (-)NCBI
RefSeq Acc Id: XM_039080724   ⟹   XP_038936652
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2836,420,565 - 36,443,477 (-)NCBI
RefSeq Acc Id: XM_039080725   ⟹   XP_038936653
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2836,420,565 - 36,440,277 (-)NCBI
RefSeq Acc Id: XM_039080726   ⟹   XP_038936654
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2836,426,394 - 36,442,061 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_536325   ⟸   NM_080400
- UniProtKB: Q91ZN7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008764264   ⟸   XM_008766042
- Peptide Label: isoform X1
- UniProtKB: Q91ZN7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008764265   ⟸   XM_008766043
- Peptide Label: isoform X1
- UniProtKB: Q91ZN7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070708   ⟸   ENSRNOT00000090161
RefSeq Acc Id: ENSRNOP00000040087   ⟸   ENSRNOT00000043518
RefSeq Acc Id: ENSRNOP00000069884   ⟸   ENSRNOT00000082086
RefSeq Acc Id: ENSRNOP00000011226   ⟸   ENSRNOT00000011226
RefSeq Acc Id: XP_038936652   ⟸   XM_039080724
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038936651   ⟸   XM_039080723
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038936653   ⟸   XM_039080725
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038936654   ⟸   XM_039080726
- Peptide Label: isoform X5
Protein Domains
Protein kinase

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695853
Promoter ID:EPDNEW_R6378
Type:multiple initiation site
Name:Chek1_2
Description:checkpoint kinase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R6379  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0839,201,600 - 39,201,660EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620545 AgrOrtholog
Ensembl Genes ENSRNOG00000031896 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000011226 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000069884 UniProtKB/TrEMBL
  ENSRNOP00000070708 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000011226 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000082086 UniProtKB/TrEMBL
  ENSRNOT00000090161 UniProtKB/Swiss-Prot
InterPro Chk1_catalytic_dom UniProtKB/Swiss-Prot
  Kinase-like_dom_sf UniProtKB/Swiss-Prot
  Oligo_trans_STT3 UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot
KEGG Report rno:140583 UniProtKB/Swiss-Prot
NCBI Gene 140583 ENTREZGENE
Pfam Pkinase UniProtKB/Swiss-Prot
  STT3 UniProtKB/TrEMBL
PharmGKB CHEK1 RGD
PhenoGen Chek1 PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot
SMART S_TKc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56112 UniProtKB/Swiss-Prot
UniProt A0A0G2JWH5_RAT UniProtKB/TrEMBL
  CHK1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q91ZN6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-12-06 Chek1  checkpoint kinase 1  Chek1  CHK1 checkpoint homolog (S. pombe)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Chek1  CHK1 checkpoint homolog (S. pombe)  Chek1  checkpoint kinase 1 homolog (S. pombe)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Chek1  checkpoint kinase 1 homolog (S. pombe)      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Chek1  checkpoint kinase 1 homolog (S. pombe)      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in liver 634611
gene_function protein kinase 70230
gene_process mammalian homologs are involved in DNA damage and replication checkpoints 70230