Galnt7 (polypeptide N-acetylgalactosaminyltransferase 7)

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Gene: Galnt7 (polypeptide N-acetylgalactosaminyltransferase 7) Rattus norvegicus

Analyze

Symbol:

Galnt7

Name:

polypeptide N-acetylgalactosaminyltransferase 7

RGD ID:

620362

Description:

Predicted to have polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in protein O-linked glycosylation. Predicted to localize to Golgi apparatus. Orthologous to human GALNT7 (polypeptide N-acetylgalactosaminyltransferase 7); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH 17beta-estradiol; acetamide; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

galNAc-T7; N-acetylgalactosaminyltransferase 7; polypeptide GalNAc transferase 7; pp-GaNTase 7; protein-UDP acetylgalactosaminyltransferase 7; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 7; UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	32,578,643 - 32,703,189 (+)	NCBI
Rnor_6.0 Ensembl	16	35,934,970 - 36,062,719 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	16	35,935,059 - 36,062,734 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	16	35,751,092 - 35,878,709 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	35,996,633 - 36,119,925 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	16	35,996,707 - 36,120,000 (+)	NCBI
Celera	16	32,526,521 - 32,648,482 (+)	NCBI		Celera
Cytogenetic Map	16	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3-methylcholanthrene (ISO)

4,4'-diaminodiphenylmethane (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP)

carbamazepine (ISO)

choline (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

dextran sulfate (ISO)

endosulfan (EXP)

Enterolactone (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

gentamycin (EXP)

hydralazine (ISO)

imidacloprid (EXP)

isoflavones (ISO)

L-methionine (ISO)

methyl methanesulfonate (ISO)

mono(2-ethylhexyl) phthalate (ISO)

oxaliplatin (EXP)

paclitaxel (ISO)

potassium chromate (ISO)

resveratrol (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

succimer (ISO)

titanium dioxide (ISO)

topotecan (EXP)

Triptolide (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

protein O-linked glycosylation (ISO)

Cellular Component

cellular_component (ND)

Golgi apparatus (IBA)

Golgi membrane (IEA)

integral component of membrane (IEA)

Molecular Function

carbohydrate binding (IEA)

metal ion binding (IEA)

molecular_function (ND)

polypeptide N-acetylgalactosaminyltransferase activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

O-linked glycan biosynthetic pathway (IEA)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	MGD data from the GO Consortium
3.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	Pipeline to import KEGG annotations from KEGG into RGD
5.	RGD automated data pipeline
6.	RGD automated import pipeline for gene-chemical interactions
7.	RGD comprehensive gene curation
8.	Ten Hagen KG, etal., J Biol Chem 1999 Sep 24;274(39):27867-74.

Additional References at PubMed

PMID:11278534	PMID:19946888	PMID:23533145

Genomics

Comparative Map Data

Galnt7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	32,578,643 - 32,703,189 (+)	NCBI
Rnor_6.0 Ensembl	16	35,934,970 - 36,062,719 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	16	35,935,059 - 36,062,734 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	16	35,751,092 - 35,878,709 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	35,996,633 - 36,119,925 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	16	35,996,707 - 36,120,000 (+)	NCBI
Celera	16	32,526,521 - 32,648,482 (+)	NCBI		Celera
Cytogenetic Map	16	p11	NCBI

GALNT7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	4	173,168,811 - 173,323,967 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	4	173,168,811 - 173,323,967 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	4	174,089,962 - 174,245,118 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	174,326,479 - 174,481,693 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	4	174,464,684 - 174,619,847	NCBI
Celera	4	171,415,030 - 171,570,230 (+)	NCBI
Cytogenetic Map	4	q34.1	NCBI
HuRef	4	169,916,336 - 169,992,841 (+)	NCBI		HuRef
CHM1_1	4	174,066,327 - 174,221,597 (+)	NCBI		CHM1_1

Galnt7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	57,976,859 - 58,106,089 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	8	57,976,862 - 58,106,066 (-)	Ensembl
GRCm38	8	57,523,825 - 57,653,055 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	57,523,828 - 57,653,032 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	60,002,622 - 60,131,852 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	60,416,711 - 60,545,145 (-)	NCBI			mm8
Celera	8	60,162,978 - 60,223,437 (-)	NCBI		Celera
Cytogenetic Map	8	B2	NCBI

Galnt7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	33,665,004 - 33,729,891 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	33,665,004 - 33,729,891 (-)	NCBI	ChiLan1.0	ChiLan1.0

GALNT7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	4	177,634,850 - 177,789,735 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	177,634,831 - 177,789,735 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	4	165,397,407 - 165,552,181 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

GALNT7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	23,839,707 - 23,930,907 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	24,445,797 - 24,581,832 (+)	NCBI
ROS_Cfam_1.0	25	23,958,062 - 24,094,328 (+)	NCBI
UMICH_Zoey_3.1	25	23,904,633 - 24,040,564 (+)	NCBI
UNSW_CanFamBas_1.0	25	23,793,458 - 23,930,860 (+)	NCBI
UU_Cfam_GSD_1.0	25	23,944,979 - 24,080,829 (+)	NCBI

Galnt7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	24,025,445 - 24,115,110 (+)	NCBI
SpeTri2.0	NW_004936516	4,439,429 - 4,530,534 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GALNT7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	16,717,173 - 16,837,975 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	16,717,172 - 16,838,007 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	17,867,645 - 17,989,132 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GALNT7
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	119,280,385 - 119,432,626 (+)	NCBI
ChlSab1.1 Ensembl	7	119,280,468 - 119,432,614 (+)	Ensembl
Vero_WHO_p1.0	NW_023666037	99,294,421 - 99,447,134 (+)	NCBI

Galnt7
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624769	4,677,286 - 4,828,329 (+)	NCBI

Position Markers

D16Rat4

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	32,602,831 - 32,602,998 (+)	MAPPER
Rnor_6.0	16	35,959,228 - 35,959,394	NCBI	Rnor6.0
Rnor_5.0	16	35,775,201 - 35,775,367	UniSTS	Rnor5.0
RGSC_v3.4	16	36,021,142 - 36,021,309	RGD	RGSC3.4
RGSC_v3.4	16	36,021,143 - 36,021,309	UniSTS	RGSC3.4
RGSC_v3.1	16	36,021,217 - 36,021,384	RGD
Celera	16	32,550,428 - 32,550,594	UniSTS
SHRSP x BN Map	16	12.43	UniSTS
SHRSP x BN Map	16	12.43	RGD
FHH x ACI Map	16	21.0798	RGD
Cytogenetic Map	16	p11	UniSTS

RH131380

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	32,580,493 - 32,580,685 (+)	MAPPER
Rnor_6.0	16	35,936,870 - 35,937,061	NCBI	Rnor6.0
Rnor_5.0	16	35,752,712 - 35,752,903	UniSTS	Rnor5.0
RGSC_v3.4	16	35,998,383 - 35,998,574	UniSTS	RGSC3.4
Celera	16	32,528,181 - 32,528,372	UniSTS
Cytogenetic Map	16	p11	UniSTS

AU047219

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	32,633,225 - 32,633,424 (+)	MAPPER
Rnor_6.0	16	35,989,609 - 35,989,807	NCBI	Rnor6.0
Rnor_5.0	16	35,805,584 - 35,805,782	UniSTS	Rnor5.0
RGSC_v3.4	16	36,051,527 - 36,051,725	UniSTS	RGSC3.4
Celera	16	32,580,799 - 32,580,997	UniSTS
Cytogenetic Map	16	p11	UniSTS

RH135406

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	32,690,145 - 32,690,351 (+)	MAPPER
Rnor_6.0	16	36,046,525 - 36,046,730	NCBI	Rnor6.0
Rnor_5.0	16	35,862,500 - 35,862,705	UniSTS	Rnor5.0
RGSC_v3.4	16	36,108,377 - 36,108,582	UniSTS	RGSC3.4
Celera	16	32,637,723 - 32,637,928	UniSTS
Cytogenetic Map	16	p11	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	41240937	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	41240937	Rat
631561	Hcuc2	Hepatic copper content QTL 2	2.8		hepatic copper amount (VT:0003065)	liver total copper weight (CMO:0001507)	16	1	41240957	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	244593	45244593	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	1090054	86162972	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1340741	46340741	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	1550187	49247447	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	1550187	63210301	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1550187	63210301	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	1550187	63210301	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	1550187	63210301	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1728297	46728297	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4136355	45905331	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	16	5013802	45905331	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	5013802	45905331	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	5013802	45905331	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	5013802	50013802	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	5013802	50169318	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	5013802	52144919	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	5013802	64012784	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor depth of invasion (CMO:0001888)	16	19398187	70590230	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor depth of invasion (CMO:0001888)	16	19398187	70590230	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	19398187	70590230	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	19398187	70590230	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	20755556	80316424	Rat
2302057	Pia29	Pristane induced arthritis QTL 29	3.6	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	16	24846541	69846541	Rat
8694453	Bw172	Body weight QTL 172	8.33	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	16	27519980	72519980	Rat
6903294	Stl30	Serum triglyceride level QTL 30	2.6	0.0013	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	16	28340315	73340315	Rat
1298529	Arunc1	Aerobic running capacity QTL 1	4		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	35307110	63909364	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	41
Count of miRNA genes:	39
Interacting mature miRNAs:	41
Transcripts:	ENSRNOT00000016474
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	8	24	10	17	10			68	19	37
Low		35	26	24	2	24	8	9	6	16	4	11	8
Below cutoff			7	7		7		2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_022926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF076167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000016474 ⟹ ENSRNOP00000016474

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	16	35,935,059 - 36,060,454 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000084707 ⟹ ENSRNOP00000072171

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	16	35,934,970 - 36,062,719 (+)	Ensembl

RefSeq Acc Id:

NM_022926 ⟹ NP_075215

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	32,578,690 - 32,700,909 (+)	NCBI
Rnor_6.0	16	35,935,059 - 36,060,454 (+)	NCBI
Rnor_5.0	16	35,751,092 - 35,878,709 (+)	NCBI
RGSC_v3.4	16	35,996,633 - 36,119,925 (+)	RGD
Celera	16	32,526,521 - 32,648,482 (+)	RGD

Sequence:

show sequence

GAGCGGTGGCGGCGGCTGCGCCGGCTGTGTGTCTCTCGCCGCCGGAGGAAGATGAGGCTGAAGA
TCGGGTTCATCTTACGCAGTTTGCTGGTGGTGGGAAGCTTCCTGGGGCTCGTGGTCCTCTGGTC
TTCCCTGTCCTCGCGACCCGACGACCCGAGCCCACTGAGCAGGATGAGGGAAGACAGAGATGTC
AATAACCCCTTGCCTAACCGAGGAGGCAATGGACTAGCTCCTGGGGATGACAGATTCAAACCTG
TGGTACCCTGGCCTCATGTTGAAGGAGTAGAAGTGGACTTAGAGTCTATTAGAAGAAAAAACAA
AGCCAAAAATGAACAGGAGCGCCATGCTGGAGGAGATTCCCAGAAAGACATAATGCAGAGACAG
TATCTTACCTTTAAGCCGCAGACATTCACCTACCGTGATCCTGTGCTACGCCCAGGGGTCCTTG
GGAACTTTGAACCCAAAGAACCCGAGCCTCACGGAGTGGTTGGTGGCCCTGGAGAGAACGCCAA
GCCCTTGGTTCTGGGACCAGAATACAAACAAGCAGCTCAAGCCAGCATCAAGGAGTTTGGATTT
AACATGGCGGCAAGTGACATGATCTCACTGGACCGCAGCGTCAATGACTTACGCCAAGAAGAAT
GCAAGTATTGGCACTATGATGAAAACCTGCTTACTTCAAGCGTCGTCATCGTCTTCCATAATGA
AGGATGGTCAACCCTCATGAGGACGGTCCACAGTGTGATCAAAAGGACACCCAGGAAGTATTTA
GCAGAAATTGTGTTAATCGATGACTTCAGCAATAAAGAACACTTAAAAGAAAAGCTGACCGAGT
ACATAAAGCTGTGGAATGGCCTTGTGAAGGTGTTCCGAAATGAGAGGAGAGAAGGCTTGATCCA
GGCTCGGAGCATCGGCGCTCAGAAGGCTAAGCTGGGACAGGTTTTGATATACCTTGATGCCCAC
TGTGAGGTGGCAGTTAACTGGTATGCACCGCTCGTAGCTCCCATATCTAAGGACAGAACCATTT
GCACTGTGCCGATTATAGATGTCATAAACGGCAACACTTATGAAATTATACCCCAAGGGGGTGG
TGATGAAGATGGGTATGCCCGAGGAGCATGGGATTGGAGTATGCTCTGGAAACGGGTGCCTCTG
ACCCCTCGAGAGAAGAGACTGAGAAAGACAAAAACTGAGCCCTATCGGTCTCCCGCTATGGCTG
GTGGATTATTTGCCATTGAGAGGGACTTCTTCTTCGAACTGGGTCTCTATGATCCTGGTCTCCA
GATTTGGGGTGGTGAAAACTTTGAAATCTCCTACAAGATCTGGCAGTGCGGTGGCAAATTGTTG
TTTGTGCCTTGTTCTCGTGTCGGGCACATCTACCGTCTAGAGGGTTGGCAAGGAAATCCTCCAC
CCCTTTACGTTGGCTCTTCTCCGACTCTTAAGAATTATGTGCGTGTTGTGGAAGTCTGGTGGGA
CGAATATAAAGACTACTTCTATGCTAGCCGTCCTGAGTCCAAGGCGCTACCTTATGGGGATATC
TCTGAGCTGAAGAAATTTCGAGAAGATCACAACTGCAAAAGTTTCAAGTGGTTTATGGAGGAAA
TCGCTTACGACATCACTGCCCACTACCCTTTGCCACCCAGAAATGTTGAGTGGGGGGAAATCCG
AGGCCTCGAGACTGCATACTGCATTGATAGCATGGGAAAGACGAACGGAGGCTTTGTGGAGCTA
GGACCCTGCCACAGGATGGGCGGGAACCAGCTTTTCCGAATCAACGAAGCAAATCAGCTCATGC
AGTACGACCAGTGTTTGACCAAGGGACCCGACGGATCCAAAGTCATGATTACTCACTGTAACCT
AAATGAATTTAAGGAGTGGCAGTACTTCAAGAACCTGCACAGGTTTACGCACATCGCCTCAGGA
AAGTGCTTAGATCGCTCCGAGGTCCTCCATCAAGTGTTCATCTCCAGCTGTGACAACGGTAAAA
TGACTCAGAAGTGGGAGATGAATAACATCCACAGTGTGTGACGGGAACGGAAGAAGCCAACAGT
CCACCTGCGGACAAGTACATTTACGGAGGACTGAAATCCGCCTGAAACCTGCTGCAACCATTAT
TGTTAATTTTGTACAGCTCCAAACCTGGGCCTCTCTGATCAGTTGGAAGGGGCGTTGATAAACT
GTGATTTTTACAATAATATTATCAT

hide sequence

RefSeq Acc Id:

XM_006253083 ⟹ XP_006253145

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	32,578,643 - 32,703,189 (+)	NCBI
Rnor_6.0	16	35,935,069 - 36,062,734 (+)	NCBI
Rnor_5.0	16	35,751,092 - 35,878,709 (+)	NCBI

Sequence:

show sequence

GGCGGCTGCGCCCGGCTGTGTGTCTCTCGCCGCCGGAGGAAGATGAGGCTGAAGATCGGGTTCA
TCTTACGCAGTTTGCTGGTGGTGGGAAGCTTCCTGGGGCTCGTGGTCCTCTGGTCTTCCCTGTC
CTCGCGACCCGACGACCCGAGCCCACTGAGCAGGATGAGGGAAGACAGAGATGTCAATAACCCC
TTGCCTAACCGAGGAGGCAATGGACTAGCTCCTGGGGATGACAGATTCAAACCTGTGGTACCCT
GGCCTCATGTTGAAGGAGTAGAAGTGGACTTAGAGTCTATTAGAAGAAAAAACAAAGCCAAAAA
TGAACAGGAGCGCCATGCTGGAGGAGATTCCCAGAAAGACATAATGCAGAGACAGTACCTTACC
TTTAAGCCGCAGACATTCACCTACCGTGATCCTGTGCTACGCCCAGGGGTCCTTGGGAACTTTG
AACCCAAAGAACCCGAGCCTCACGGAGTGGTTGGTGGCCCTGGAGAGAACGCCAAGCCCTTGGT
TCTGGGACCAGAATACAAACAAGCAGCTCAAGCCAGCATCAAGGAGTTTGGATTTAACATGGCG
GCAAGTGACATGATCTCACTGGACCGCAGCGTCAATGACTTACGCCAAGAAGAATGCAAGTATT
GGCATTATGATGAAAACCTGCTTACTTCAAGCGTCGTCATCGTCTTCCATAATGAAGGATGGTC
AACCCTCATGAGGACGGTCCACAGTGTGATCAAAAGGACACCCAGGAAGTATTTAGCAGAAATT
GTGTTAATCGATGACTTCAGCAATAAAGAACACTTAAAAGAAAAGCTGACCGAGTACATAAAGC
TGTGGAATGGCCTTGTGAAGGTGTTCCGAAATGAGAGGAGAGAAGGCTTGATCCAGGCTCGGAG
CATCGGCGCTCAGAAGGCTAAGCTGGGACAGGTTTTGATATACCTTGATGCCCACTGTGAGGTG
GCAGTTAACTGGTATGCACCGCTCGTAGCTCCCATATCTAAGGACAGAGCTACATGTACTGTGC
CTCTAATAGATTACATAGACGGGAATGATTATTCCATTGAACCACAGCAAGGTGGGGACGAAGA
TGGTTTTGCCAGAGGGGCCTGGGACTGGAGTATGCTATGGAAACGTATTCCACTAAGCCACAAG
GAAAAGGCCAAAAGAAAACATAAAACTGAACCTTATCGGTCTCCCGCTATGGCTGGTGGATTAT
TTGCCATTGAGAGGGACTTCTTCTTCGAACTGGGTCTCTATGATCCTGGTCTCCAGATTTGGGG
TGGTGAAAACTTTGAAATCTCCTACAAGATCTGGCAGTGCGGTGGCAAATTGTTGTTTGTGCCT
TGTTCTCGTGTCGGGCACATCTACCGTCTAGAGGGTTGGCAAGGAAATCCTCCACCCCTTTACG
TTGGCTCTTCTCCGACTCTTAAGAATTATGTGCGTGTTGTGGAAGTCTGGTGGGACGAATATAA
AGACTACTTCTATGCTAGCCGTCCTGAGTCCAAGGCGCTACCTTATGGGGATATCTCTGAGCTG
AAGAAATTTCGAGAAGATCACAACTGCAAAAGTTTCAAGTGGTTTATGGAGGAAATCGCTTACG
ACATCACTGCCCACTACCCTTTGCCACCCAGAAATGTTGAGTGGGGGGAAATCCGAGGCCTCGA
GACTGCATACTGCATTGATAGCATGGGAAAGACGAACGGAGGCTTTGTGGAGCTAGGACCCTGC
CACAGGATGGGCGGGAACCAGCTTTTCCGAATCAACGAAGCAAATCAGCTCATGCAGTACGACC
AGTGTTTGACCAAGGGACCCGACGGATCCAAAGTCATGATTACTCACTGTAACCTAAATGAATT
TAAGGAGTGGCAGTACTTCAAGAACCTGCACAGGTTTACGCACATCGCCTCAGGAAAGTGCTTA
GATCGCTCCGAGGTCCTCCATCAAGTGTTCATCTCCAGCTGTGACAACGGTAAAATGACTCAGA
AGTGGGAGATGAATAACATCCACAGTGTGTGACGGGAACGGAAGAAGCCAACAGTCCACCTGCG
GACAAGTACATTTACGGAGGACTGAAATCCGCCTGAAACCTGCTGCAACCATTATTGTTAATTT
TGTACAGCTCCAAACCTGGGGCCTCTCTGATCAGTTGGAAGGGGCGTTGATAAACTGTGATTTT
TACAATAATATTATCATCTGCAGTTACTGTTTACAAAACTGCTCTTACCTTAAACTCTAGATGT
TTACATCGTTTTTGTTTTGTTTCGTGATGATGTCAGTAATTTGTACCTTTAACTCGGTGTCCTG
AACCTCCGAGTTAAAGCGTTATGTTGTCTTCTTTGGGAATACACTCAGGGGTCTAGAAGGCAGT
TTGGTATTTTCGTTGTTGATGTTGTTCTTGTTTTTTTAACACACTTGAAAACAAACAAGGGTTG
GAGTAAGCAGACTTTCACATCCGACTTGGTGACGATCAACCTGCTGTATATTTAATTTTACATC
TTTCGGAAGCATTGCCACGGGTTGTTGGCCAAGGCGGCCTTCCTTCAGTCACGCTGCTGTTTGA
AAGGTGAAATTCAACACATTTAGTGCCTCTTTGATTTCTCAGTATATTTTTTGAGAGCTTCTAG
TGAAATTTCTATGCTGGTAACCATGAATGGTAACAGTGAATGTCACCTGGGGAATCCGCCTGTT
ACTCACATGTGAATTTCTTGGCTATGAAGTGGAACGTTGTATGGCAGGATCAAGGACCACAGTG
GGGACAATCAAGGCCCTTCAGTGGGGCAGATTCTATGGCATTACCTCCCTAGCCTGCTGATGTT
CTTAAAGCCCTCAGTTCACACCAACTTCAGGCTAGCAAAGGGGTCTTCCTTCTGAAAAGAGGGG
TTGGATTTTGCCCATCTACATTTACATCTGCTTCCCCCCCAGTACCAGTCACTCTAGAAAATGA
GAAATAATTCTGTGAAGGGCGGTTTGAGGGTCAGGAAAACAACACAACAAAGCCCTCCTGTGAA
CGAATGCCCTAGGTTGGGCCTGAGGTAAGAATTCCCGCGTCCTTGTGAGAGGGAAGCCTTAGGA
AGAAAGCCCAGCCCAGCACAAGCTGTGGACGAGATGAGCTGACACTTCGTTTTGTCTTCATTCA
AAGGAAATTCCATGCGCATTCTTTTTATTTTAGGAAAATTAGTATCTAATTTTCTATTCTTAGA
TCTTATTATCTAAGAAGACAAATCATCAACAAATGTGGGCTACATTCTGCTAAGTTAGATGCTA
GTTCTGTAAGGTCCTTAATTTGTTTTTAGGAAGTATAAATTTTTTTATATTCTCCATGGAAAAG
AAGATTTAATTTGAACGTTTATTAAGACAATACCTACTGGGGTTGGGGATTTAGCTCAGTGGTA
GAGCGCTTGCCTAGCAAGCGGAAGGCCCTGGGTTCGGTCCCCAGCTCGGAAAAAAAGAAAAAGG
AAAAAAAACAAAAAAACAAAAAAAAAAAACAATACCTACTTTAAGAGAGAACCAAATGTTGCAA
ACTTTAGTTTCTAGGAAGTCTTCTATTATCCCCCACCCCTAACCCCCAAATTAAAATGTCTACA
TTGAGTGCCAAAAAAGAAAGGAAAGAAAAGAAAAGCAGTGTGGTGAGCTGGGGCCTGTTAAGCA
TTTTTGATCATGTAATCATGGTATCAATGACAAACTACTGCCAGAAAGAAATATTTTTAATTAA
AGCTTAAGGGGGAAAAACGGAAGAAAAAAAGTCTACATTTTTTGGGAGAAAAACATACGATTAT
TTTTCTTCCAACTTTAATTCATCAATTTGGACAGTAAAAATTAAACATCCTGAACAGTTTTATT
TATAATCTTGAATTGTCAATTTGTACTTTGCTATTGACCTGTGATCAACTATTTAAACTTTCAT
CTCTAGGGTTATTTAAAGAAGAAATGCATTTATATGCTTATACAATTGCAAATAAATCCATTAT
AGAAAGGAAGCTAAGAGGACTGGTAATTACTTGTACGTTAGAAATTGACACCATTTTCCCTGTT
AAATAGATTTGAACCTCATATCTATGCATAGGCTAAGAAAGGTGGCCCATGAAGTGTGCATGTA
ATTTTATGGGTAAATTAAATTGTTTTTAGTACAATTTGTTAGGATACGCTATAAACACGATTCT
GTATATCGAAATCAGAAACCTTGCCACACATGGAAACATCAGAAGCTGCCGCCATAATGACTAT
TTTATACTTCAGGCTGCTTTGGGAACAGTCCCCATACCCTTGCTTTGTAAGTTGATAATACCAC
TATGCATTTCTACACATTTTATAAATTTGATTTATGCAGATTTTGATACACTGTATGTTTCTGT
AGAAATTGTACAAATATTCAAAATTTTACTAGGATAAACTTGAGAAGCTTATGTATAACTTAAT
TCTGGGTTGCTTGTTTTATAGGTGAGGAAAAATAAAATACTGTATTTTAATCCATAA

hide sequence

RefSeq Acc Id:

XM_017600074 ⟹ XP_017455563

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	35,935,069 - 36,055,308 (+)	NCBI

Sequence:

show sequence

GGCGGCTGCGCCCGGCTGTGTGTCTCTCGCCGCCGGAGGAAGATGAGGCTGAAGATCGGGTTCA
TCTTACGCAGTTTGCTGGTGGTGGGAAGCTTCCTGGGGCTCGTGGTCCTCTGGTCTTCCCTGTC
CTCGCGACCCGACGACCCGAGCCCACTGAGCAGGATGAGGGAAGACAGAGATGTCAATAACCCC
TTGCCTAACCGAGGAGGCAATGGACTAGCTCCTGGGGATGACAGATTCAAACCTGTGGTACCCT
GGCCTCATGTTGAAGGAGTAGAAGTGGACTTAGAGTCTATTAGAAGAAAAAACAAAGCCAAAAA
TGAACAGGAGCGCCATGCTGGAGGAGATTCCCAGAAAGACATAATGCAGAGACAGTACCTTACC
TTTAAGCCGCAGACATTCACCTACCGTGATCCTGTGCTACGCCCAGGGGTCCTTGGGAACTTTG
AACCCAAAGAACCCGAGCCTCACGGAGTGGTTGGTGGCCCTGGAGAGAACGCCAAGCCCTTGGT
TCTGGGACCAGAATACAAACAAGCAGCTCAAGCCAGCATCAAGGAGTTTGGATTTAACATGGCG
GCAAGTGACATGATCTCACTGGACCGCAGCGTCAATGACTTACGCCAAGAAGAATGCAAGTATT
GGCATTATGATGAAAACCTGCTTACTTCAAGCGTCGTCATCGTCTTCCATAATGAAGGATGGTC
AACCCTCATGAGGACGGTCCACAGTGTGATCAAAAGGACACCCAGGAAGTATTTAGCAGAAATT
GTGTTAATCGATGACTTCAGCAATAAAGAACACTTAAAAGAAAAGCTGACCGAGTACATAAAGC
TGTGGAATGGCCTTGTGAAGGTGTTCCGAAATGAGAGGAGAGAAGGCTTGATCCAGGCTCGGAG
CATCGGCGCTCAGAAGGCTAAGCTGGGACAGGTTTTGATATACCTTGATGCCCACTGTGAGGTG
GCAGTTAACTGGTATGCACCGCTCGTAGCTCCCATATCTAAGGACAGAGCTACATGTACTGTGC
CTCTAATAGATTACATAGACGGGAATGATTATTCCATTGAACCACAGCAAGGTGGGGACGAAGA
TGGTTTTGCCAGAGGGGCCTGGGACTGGAGTATGCTATGGAAACGTATTCCACTAAGCCACAAG
GAAAAGGCCAAAAGAAAACATAAAACTGAACCTTATCGGTCTCCCGCTATGGCTGGTGGATTAT
TTGCCATTGAGAGGGACTTCTTCTTCGAACTGGGTCTCTATGATCCTGGTCTCCAGATTTGGGG
TGGTGAAAACTTTGAAATCTCCTACAAGATCTGGCAGTGCGGTGGCAAATTGTTGTTTGTGCCT
TGTTCTCGTGTCGGGCACATCTACCGTCTAGAGGGTTGGCAAGGAAATCCTCCACCCCTTTACG
TTGGCTCTTCTCCGACTCTTAAGAATTATGTGCGTGTTGTGGAAGTCTGGTGGGACGAATATAA
AGACTACTTCTATGCTAGCCGTCCTGAGTCCAAGGCGCTACCTTATGGGGATATCTCTGAGCTG
AAGAAATTTCGAGAAGATCACAACTGCAAAAGTTTCAAGTGGTTTATGGAGGAAATCGCTTACG
ACATCACTGCCCACTACCCTTTGCCACCCAGAAATGTTGAGTGGGGGGAATCCATGGACACTGC
AGTCCTAAGACGTTTCCTCGGATCCGAGGCCTCGAGACTGCATACTGCATTGATAGCATGGGAA
AGACGAACGGAGGCTTTGTGGAGCTAGGACCCTGCCACAGGATGGGCGGGAACCAGCTTTTCCG
AATCAACGAAGCAAATCAGCTCATGCAGTACGACCAGTGTTTGACCAAGGGACCCGACGGATCC
AAAGTCATGATTACTC

hide sequence

RefSeq Acc Id:

XM_039094437 ⟹ XP_038950365

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	32,578,742 - 32,703,189 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_075215	(Get FASTA)	NCBI Sequence Viewer
	XP_006253145	(Get FASTA)	NCBI Sequence Viewer
	XP_038950365	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC99426	(Get FASTA)	NCBI Sequence Viewer
	EDL87173	(Get FASTA)	NCBI Sequence Viewer
	EDL87174	(Get FASTA)	NCBI Sequence Viewer
	Q9R0C5	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_075215 ⟸ NM_022926

- UniProtKB:

Q9R0C5 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MRLKIGFILRSLLVVGSFLGLVVLWSSLSSRPDDPSPLSRMREDRDVNNPLPNRGGNGLAPGDD
RFKPVVPWPHVEGVEVDLESIRRKNKAKNEQERHAGGDSQKDIMQRQYLTFKPQTFTYRDPVLR
PGVLGNFEPKEPEPHGVVGGPGENAKPLVLGPEYKQAAQASIKEFGFNMAASDMISLDRSVNDL
RQEECKYWHYDENLLTSSVVIVFHNEGWSTLMRTVHSVIKRTPRKYLAEIVLIDDFSNKEHLKE
KLTEYIKLWNGLVKVFRNERREGLIQARSIGAQKAKLGQVLIYLDAHCEVAVNWYAPLVAPISK
DRTICTVPIIDVINGNTYEIIPQGGGDEDGYARGAWDWSMLWKRVPLTPREKRLRKTKTEPYRS
PAMAGGLFAIERDFFFELGLYDPGLQIWGGENFEISYKIWQCGGKLLFVPCSRVGHIYRLEGWQ
GNPPPLYVGSSPTLKNYVRVVEVWWDEYKDYFYASRPESKALPYGDISELKKFREDHNCKSFKW
FMEEIAYDITAHYPLPPRNVEWGEIRGLETAYCIDSMGKTNGGFVELGPCHRMGGNQLFRINEA
NQLMQYDQCLTKGPDGSKVMITHCNLNEFKEWQYFKNLHRFTHIASGKCLDRSEVLHQVFISSC
DNGKMTQKWEMNNIHSV

hide sequence

RefSeq Acc Id:

XP_006253145 ⟸ XM_006253083

- Peptide Label:

isoform X1

- Sequence:

show sequence

MRLKIGFILRSLLVVGSFLGLVVLWSSLSSRPDDPSPLSRMREDRDVNNPLPNRGGNGLAPGDD
RFKPVVPWPHVEGVEVDLESIRRKNKAKNEQERHAGGDSQKDIMQRQYLTFKPQTFTYRDPVLR
PGVLGNFEPKEPEPHGVVGGPGENAKPLVLGPEYKQAAQASIKEFGFNMAASDMISLDRSVNDL
RQEECKYWHYDENLLTSSVVIVFHNEGWSTLMRTVHSVIKRTPRKYLAEIVLIDDFSNKEHLKE
KLTEYIKLWNGLVKVFRNERREGLIQARSIGAQKAKLGQVLIYLDAHCEVAVNWYAPLVAPISK
DRATCTVPLIDYIDGNDYSIEPQQGGDEDGFARGAWDWSMLWKRIPLSHKEKAKRKHKTEPYRS
PAMAGGLFAIERDFFFELGLYDPGLQIWGGENFEISYKIWQCGGKLLFVPCSRVGHIYRLEGWQ
GNPPPLYVGSSPTLKNYVRVVEVWWDEYKDYFYASRPESKALPYGDISELKKFREDHNCKSFKW
FMEEIAYDITAHYPLPPRNVEWGEIRGLETAYCIDSMGKTNGGFVELGPCHRMGGNQLFRINEA
NQLMQYDQCLTKGPDGSKVMITHCNLNEFKEWQYFKNLHRFTHIASGKCLDRSEVLHQVFISSC
DNGKMTQKWEMNNIHSV

hide sequence

RefSeq Acc Id:

XP_017455563 ⟸ XM_017600074

- Peptide Label:

isoform X2

- Sequence:

show sequence

MRLKIGFILRSLLVVGSFLGLVVLWSSLSSRPDDPSPLSRMREDRDVNNPLPNRGGNGLAPGDD
RFKPVVPWPHVEGVEVDLESIRRKNKAKNEQERHAGGDSQKDIMQRQYLTFKPQTFTYRDPVLR
PGVLGNFEPKEPEPHGVVGGPGENAKPLVLGPEYKQAAQASIKEFGFNMAASDMISLDRSVNDL
RQEECKYWHYDENLLTSSVVIVFHNEGWSTLMRTVHSVIKRTPRKYLAEIVLIDDFSNKEHLKE
KLTEYIKLWNGLVKVFRNERREGLIQARSIGAQKAKLGQVLIYLDAHCEVAVNWYAPLVAPISK
DRATCTVPLIDYIDGNDYSIEPQQGGDEDGFARGAWDWSMLWKRIPLSHKEKAKRKHKTEPYRS
PAMAGGLFAIERDFFFELGLYDPGLQIWGGENFEISYKIWQCGGKLLFVPCSRVGHIYRLEGWQ
GNPPPLYVGSSPTLKNYVRVVEVWWDEYKDYFYASRPESKALPYGDISELKKFREDHNCKSFKW
FMEEIAYDITAHYPLPPRNVEWGESMDTAVLRRFLGSEASRLHTALIAWERRTEALWS

hide sequence

RefSeq Acc Id:

ENSRNOP00000072171 ⟸ ENSRNOT00000084707

RefSeq Acc Id:

ENSRNOP00000016474 ⟸ ENSRNOT00000016474

RefSeq Acc Id:	XP_038950365 ⟸ XM_039094437
- Peptide Label:	isoform X2

Protein Domains

Ricin B-type lectin

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700075

Promoter ID:

EPDNEW_R10598

Type:

initiation region

Name:

Galnt7_1

Description:

polypeptide N-acetylgalactosaminyltransferase 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	35,935,086 - 35,935,146	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620362	AgrOrtholog
Ensembl Genes	ENSRNOG00000012037	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000016474	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000072171	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000016474	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000084707	UniProtKB/Swiss-Prot
Gene3D-CATH	3.90.550.10	UniProtKB/Swiss-Prot
InterPro	Glyco_trans_2-like	UniProtKB/Swiss-Prot
	Nucleotide-diphossugar_trans	UniProtKB/Swiss-Prot
	Ricin_B-like_lectins	UniProtKB/Swiss-Prot
	Ricin_B_lectin	UniProtKB/Swiss-Prot
KEGG Report	rno:29750	UniProtKB/Swiss-Prot
NCBI Gene	29750	ENTREZGENE
Pfam	Glycos_transf_2	UniProtKB/Swiss-Prot
	Ricin_B_lectin	UniProtKB/Swiss-Prot
PharmGKB	GALNT7	RGD
PhenoGen	Galnt7	PhenoGen
PROSITE	RICIN_B_LECTIN	UniProtKB/Swiss-Prot
SMART	RICIN	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF50370	UniProtKB/Swiss-Prot
	SSF53448	UniProtKB/Swiss-Prot
UniProt	GALT7_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-03-21	Galnt7	polypeptide N-acetylgalactosaminyltransferase 7	Galnt7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-17	Galnt7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	Galnt7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	Galnt7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7	Galnt7		Name updated	1299863	APPROVED
2004-09-10	Galnt7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	Galnt7	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	Name updated	1299863	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in the sublingual gland, stomach, small intestine, and colon	632707
gene_function	transfers GalNAc to a GalNAc-containing glycopeptide	632707
gene_product	member of the UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase (ppGaNTase) family	632707

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)