Ank2 (ankyrin 2) - Rat Genome Database

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Gene: Ank2 (ankyrin 2) Rattus norvegicus
Analyze
Symbol: Ank2
Name: ankyrin 2
RGD ID: 620156
Description: Enables protein kinase binding activity and transmembrane transporter binding activity. A structural constituent of cytoskeleton. Involved in paranodal junction assembly and response to methylmercury. Located in several cellular components, including cytoskeleton; membrane raft; and neuron projection. Biomarker of transient cerebral ischemia. Human ortholog(s) of this gene implicated in ankyrin-B-related cardiac arrhythmia; atrial fibrillation; long QT syndrome; and sick sinus syndrome. Orthologous to human ANK2 (ankyrin 2); INTERACTS WITH 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 2,3,7,8-Tetrachlorodibenzofuran; 3',5'-cyclic AMP.
Type: protein-coding
RefSeq Status: MODEL
Also known as: Ank3; ankyrin 2, brain; ankyrin 2, neuronal; ankyrin 3, epithelial; ankyrin-2; LOC103691695; LOC310885; LOC362036; LOW QUALITY PROTEIN: ankyrin-2; uncharacterized LOC103691695
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22215,378,028 - 215,954,015 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2215,379,680 - 215,862,923 (-)Ensembl
Rnor_6.02231,224,643 - 231,522,655 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2231,226,949 - 231,648,122 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02250,573,979 - 250,869,144 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42224,182,431 - 224,501,751 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12224,228,885 - 224,376,051 (-)NCBI
Celera2207,699,846 - 207,902,141 (-)NCBICelera
Cytogenetic Map2q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (EXP)
1,1-dichloroethene  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3',5'-cyclic AMP  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-methylcholanthrene  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
8'-apo-beta,psi-caroten-8'-al  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
beta-carotene  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
carmustine  (ISO)
choline  (ISO)
cisplatin  (EXP,ISO)
cobalt dichloride  (ISO)
cycloheximide  (ISO)
cyclosporin A  (ISO)
daunorubicin  (ISO)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
lovastatin  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
mitoxantrone  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
O-methyleugenol  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
perfluorononanoic acid  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
potassium dichromate  (ISO)
pravastatin  (EXP,ISO)
quercetin  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
temozolomide  (ISO)
thimerosal  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
zaragozic acid A  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
atrial cardiac muscle cell action potential  (ISO)
atrial cardiac muscle cell to AV node cell communication  (ISO)
atrial septum development  (ISO)
cardiac muscle contraction  (ISO)
cellular calcium ion homeostasis  (ISO)
cellular protein localization  (ISO)
cytoskeleton organization  (IEA)
nervous system development  (IEP)
paranodal junction assembly  (IEP)
positive regulation of calcium ion transmembrane transporter activity  (ISO)
positive regulation of calcium ion transport  (ISO)
positive regulation of cation channel activity  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of potassium ion transmembrane transporter activity  (ISO)
positive regulation of potassium ion transport  (ISO)
protein localization  (ISO)
protein localization to cell surface  (ISO)
protein localization to endoplasmic reticulum  (ISO)
protein localization to M-band  (ISO)
protein localization to organelle  (ISO)
protein localization to plasma membrane  (ISO)
protein localization to T-tubule  (ISO)
protein stabilization  (ISO)
regulation of atrial cardiac muscle cell action potential  (ISO)
regulation of AV node cell action potential  (ISO)
regulation of calcium ion transmembrane transporter activity  (ISO)
regulation of calcium ion transport  (ISO)
regulation of cardiac muscle cell contraction  (ISO)
regulation of cardiac muscle cell membrane potential  (ISO)
regulation of cardiac muscle contraction  (ISO)
regulation of cardiac muscle contraction by calcium ion signaling  (ISO)
regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion  (ISO)
regulation of cation channel activity  (ISO)
regulation of heart rate  (ISO)
regulation of heart rate by cardiac conduction  (ISO)
regulation of release of sequestered calcium ion into cytosol  (ISO)
regulation of SA node cell action potential  (ISO)
regulation of ventricular cardiac muscle cell membrane repolarization  (ISO)
response to methylmercury  (IEP)
SA node cell action potential  (ISO)
SA node cell to atrial cardiac muscle cell communication  (ISO)
T-tubule organization  (ISO)
ventricular cardiac muscle cell action potential  (ISO)

Cellular Component

References

Additional References at PubMed
PMID:7961622   PMID:9151675   PMID:11781319   PMID:12070130   PMID:15611082   PMID:16292983   PMID:17114649   PMID:17178715   PMID:17242276   PMID:17416611   PMID:17884088   PMID:18832177  
PMID:19007774   PMID:20489164   PMID:20610380   PMID:21177872   PMID:21700703   PMID:22886464   PMID:25950943   PMID:26109584   PMID:30949686   PMID:32640013  


Genomics

Comparative Map Data
Ank2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22215,378,028 - 215,954,015 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2215,379,680 - 215,862,923 (-)Ensembl
Rnor_6.02231,224,643 - 231,522,655 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2231,226,949 - 231,648,122 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02250,573,979 - 250,869,144 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42224,182,431 - 224,501,751 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12224,228,885 - 224,376,051 (-)NCBI
Celera2207,699,846 - 207,902,141 (-)NCBICelera
Cytogenetic Map2q42NCBI
ANK2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4112,818,032 - 113,384,221 (+)EnsemblGRCh38hg38GRCh38
GRCh384112,705,622 - 113,383,736 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh374113,626,778 - 114,304,892 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364114,190,319 - 114,524,337 (+)NCBINCBI36hg18NCBI36
Celera4111,031,065 - 111,596,545 (+)NCBI
Cytogenetic Map4q25-q26NCBI
HuRef4109,467,190 - 110,033,212 (+)NCBIHuRef
CHM1_14113,715,710 - 114,281,305 (+)NCBICHM1_1
Ank2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393126,715,256 - 127,293,996 (-)NCBIGRCm39mm39
GRCm39 Ensembl3126,715,261 - 127,292,999 (-)Ensembl
GRCm383126,921,607 - 127,500,347 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3126,921,612 - 127,499,350 (-)EnsemblGRCm38mm10GRCm38
MGSCv373126,624,525 - 126,701,370 (-)NCBIGRCm37mm9NCBIm37
MGSCv363126,913,629 - 126,990,474 (-)NCBImm8
Celera3133,394,159 - 133,470,953 (-)NCBICelera
Cytogenetic Map3G2NCBI
cM Map356.07NCBI
Ank2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545713,624,413 - 14,076,261 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545713,624,590 - 13,938,427 (-)NCBIChiLan1.0ChiLan1.0
ANK2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14115,760,071 - 116,446,170 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4115,967,106 - 116,443,905 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04105,315,776 - 105,882,506 (+)NCBIMhudiblu_PPA_v0panPan3
ANK2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13232,484,196 - 33,143,295 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3232,671,281 - 33,141,036 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha328,888,883 - 9,218,786 (-)NCBI
ROS_Cfam_1.03233,040,789 - 33,371,120 (+)NCBI
UMICH_Zoey_3.13233,020,952 - 33,349,123 (+)NCBI
UNSW_CanFamBas_1.03232,787,755 - 33,117,694 (+)NCBI
UU_Cfam_GSD_1.0326,746,226 - 7,076,960 (-)NCBI
Ank2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053017,738,663 - 8,389,184 (-)NCBI
SpeTri2.0NW_0049365633,520,195 - 4,170,716 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANK2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.18109,306,793 - 109,661,970 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28117,345,572 - 117,559,478 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANK2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1760,487,776 - 61,174,351 (+)NCBI
ChlSab1.1 Ensembl760,938,523 - 61,175,519 (+)Ensembl
Vero_WHO_p1.0NW_02366603739,246,221 - 39,938,996 (+)NCBI
Ank2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248386,490,434 - 7,023,945 (+)NCBI

Position Markers
D2Rat360  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,641,574 - 215,641,788 (+)MAPPERmRatBN7.2
Rnor_6.02231,488,516 - 231,488,731NCBIRnor6.0
Rnor_5.02250,836,498 - 250,836,713UniSTSRnor5.0
RGSC_v3.42224,468,436 - 224,468,649UniSTSRGSC3.4
Celera2207,962,059 - 207,962,274UniSTS
RH 3.4 Map21546.8UniSTS
RH 3.4 Map21546.8RGD
RH 2.0 Map21142.2RGD
SHRSP x BN Map286.3798RGD
Cytogenetic Map2q42UniSTS
AW491075  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,378,422 - 215,378,515 (+)MAPPERmRatBN7.2
Rnor_6.02231,225,038 - 231,225,130NCBIRnor6.0
Rnor_5.02250,574,369 - 250,574,461UniSTSRnor5.0
RGSC_v3.42224,181,007 - 224,181,099UniSTSRGSC3.4
Celera2207,700,241 - 207,700,333UniSTS
Cytogenetic Map2q42UniSTS
BF390514  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,430,667 - 215,430,822 (+)MAPPERmRatBN7.2
Rnor_6.02231,277,280 - 231,277,434NCBIRnor6.0
Rnor_5.02250,626,611 - 250,626,765UniSTSRnor5.0
RGSC_v3.42224,233,249 - 224,233,403UniSTSRGSC3.4
Celera2207,752,482 - 207,752,636UniSTS
RH 3.4 Map21546.3UniSTS
Cytogenetic Map2q42UniSTS
RH132931  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,585,818 - 215,586,020 (+)MAPPERmRatBN7.2
Rnor_6.02231,432,766 - 231,432,967NCBIRnor6.0
Rnor_5.02250,780,748 - 250,780,949UniSTSRnor5.0
RGSC_v3.42224,412,666 - 224,412,867UniSTSRGSC3.4
Celera2207,906,163 - 207,906,364UniSTS
RH 3.4 Map21546.5UniSTS
Cytogenetic Map2q42UniSTS
RH144369  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,636,683 - 215,636,941 (+)MAPPERmRatBN7.2
Rnor_6.02231,483,625 - 231,483,882NCBIRnor6.0
Rnor_5.02250,831,607 - 250,831,864UniSTSRnor5.0
RGSC_v3.42224,463,545 - 224,463,802UniSTSRGSC3.4
Celera2207,957,168 - 207,957,425UniSTS
RH 3.4 Map21606.4UniSTS
Cytogenetic Map2q42UniSTS
BE101848  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,402,476 - 215,402,627 (+)MAPPERmRatBN7.2
Rnor_6.02231,249,089 - 231,249,239NCBIRnor6.0
Rnor_5.02250,598,420 - 250,598,570UniSTSRnor5.0
RGSC_v3.42224,205,058 - 224,205,208UniSTSRGSC3.4
Celera2207,724,293 - 207,724,443UniSTS
RH 3.4 Map21546.4UniSTS
Cytogenetic Map2q42UniSTS
RH141556  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22215,487,784 - 215,487,964 (+)MAPPERmRatBN7.2
Rnor_6.02231,334,412 - 231,334,591NCBIRnor6.0
Rnor_5.02250,682,394 - 250,682,573UniSTSRnor5.0
RGSC_v3.42224,314,113 - 224,314,292UniSTSRGSC3.4
Celera2207,808,132 - 207,808,311UniSTS
RH 3.4 Map21556.7UniSTS
Cytogenetic Map2q42UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631203Gluco14Glucose level QTL 140.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)2206665645219003804Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
1331745Bp203Blood pressure QTL 2034.377arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2189599258218414891Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2189599258226936289Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
2299161Iddm33Insulin dependent diabetes mellitus QTL 332.98blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2206312063220876787Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2185876309219753474Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2185876309219753474Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:235
Count of miRNA genes:143
Interacting mature miRNAs:159
Transcripts:ENSRNOT00000014962, ENSRNOT00000015386, ENSRNOT00000037255, ENSRNOT00000055615, ENSRNOT00000068415, ENSRNOT00000074002
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 8 8 72 4 14 8 8
Low 3 35 24 8 18 8 3 2 31 27 3
Below cutoff 28 28 1 28

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_017591417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACYVU010000079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U65916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000014962   ⟹   ENSRNOP00000014962
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2231,333,076 - 231,648,122 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000015386   ⟹   ENSRNOP00000015386
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2215,385,041 - 215,675,402 (-)Ensembl
Rnor_6.0 Ensembl2231,231,827 - 231,409,496 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000037255   ⟹   ENSRNOP00000035307
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2215,385,041 - 215,563,039 (-)Ensembl
Rnor_6.0 Ensembl2231,231,827 - 231,409,988 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000055615   ⟹   ENSRNOP00000052477
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2215,379,680 - 215,862,923 (-)Ensembl
Rnor_6.0 Ensembl2231,226,949 - 231,409,496 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000068415   ⟹   ENSRNOP00000060715
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2231,329,829 - 231,409,496 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000074002   ⟹   ENSRNOP00000064466
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2231,335,849 - 231,409,988 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000080470   ⟹   ENSRNOP00000073918
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2215,379,680 - 215,675,402 (-)Ensembl
Rnor_6.0 Ensembl2231,232,925 - 231,521,052 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000080637   ⟹   ENSRNOP00000070916
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2215,379,680 - 215,614,015 (-)Ensembl
Rnor_6.0 Ensembl2231,226,949 - 231,409,988 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000084756   ⟹   ENSRNOP00000075511
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2215,379,680 - 215,614,015 (-)Ensembl
Rnor_6.0 Ensembl2231,232,925 - 231,521,052 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000089534   ⟹   ENSRNOP00000075731
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2215,385,041 - 215,674,770 (-)Ensembl
Rnor_6.0 Ensembl2231,231,827 - 231,521,052 (-)Ensembl
RefSeq Acc Id: XM_039103993   ⟹   XP_038959921
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,701,707 (-)NCBI
RefSeq Acc Id: XM_039103994   ⟹   XP_038959922
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,701,707 (-)NCBI
RefSeq Acc Id: XM_039103995   ⟹   XP_038959923
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,701,707 (-)NCBI
RefSeq Acc Id: XM_039103996   ⟹   XP_038959924
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,701,707 (-)NCBI
RefSeq Acc Id: XM_039103997   ⟹   XP_038959925
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,701,707 (-)NCBI
RefSeq Acc Id: XM_039103998   ⟹   XP_038959926
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,701,707 (-)NCBI
RefSeq Acc Id: XM_039103999   ⟹   XP_038959927
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,612,023 (-)NCBI
RefSeq Acc Id: XM_039104000   ⟹   XP_038959928
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,701,707 (-)NCBI
RefSeq Acc Id: XM_039104001   ⟹   XP_038959929
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,862,789 (-)NCBI
RefSeq Acc Id: XM_039104003   ⟹   XP_038959931
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,701,707 (-)NCBI
RefSeq Acc Id: XM_039104004   ⟹   XP_038959932
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,701,707 (-)NCBI
RefSeq Acc Id: XM_039104005   ⟹   XP_038959933
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,676,334 (-)NCBI
RefSeq Acc Id: XM_039104006   ⟹   XP_038959934
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,581,487 (-)NCBI
RefSeq Acc Id: XM_039104007   ⟹   XP_038959935
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,676,334 (-)NCBI
RefSeq Acc Id: XM_039104008   ⟹   XP_038959936
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,701,707 (-)NCBI
RefSeq Acc Id: XM_039104009   ⟹   XP_038959937
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,701,707 (-)NCBI
RefSeq Acc Id: XM_039104010   ⟹   XP_038959938
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,581,715 (-)NCBI
RefSeq Acc Id: XM_039104011   ⟹   XP_038959939
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,954,015 (-)NCBI
RefSeq Acc Id: XM_039104012   ⟹   XP_038959940
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,701,707 (-)NCBI
RefSeq Acc Id: XM_039104014   ⟹   XP_038959942
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,701,707 (-)NCBI
RefSeq Acc Id: XM_039104015   ⟹   XP_038959943
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,862,731 (-)NCBI
RefSeq Acc Id: XM_039104016   ⟹   XP_038959944
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,701,707 (-)NCBI
RefSeq Acc Id: XM_039104017   ⟹   XP_038959945
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,701,707 (-)NCBI
RefSeq Acc Id: XM_039104018   ⟹   XP_038959946
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,701,707 (-)NCBI
RefSeq Acc Id: XM_039104019   ⟹   XP_038959947
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,701,707 (-)NCBI
RefSeq Acc Id: XM_039104020   ⟹   XP_038959948
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,701,707 (-)NCBI
RefSeq Acc Id: XM_039104021   ⟹   XP_038959949
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,701,707 (-)NCBI
RefSeq Acc Id: XM_039104022   ⟹   XP_038959950
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,676,331 (-)NCBI
RefSeq Acc Id: XM_039104023   ⟹   XP_038959951
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,676,330 (-)NCBI
RefSeq Acc Id: XM_039104025   ⟹   XP_038959953
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,701,707 (-)NCBI
RefSeq Acc Id: XM_039104026   ⟹   XP_038959954
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,380,195 - 215,954,015 (-)NCBI
RefSeq Acc Id: XM_039104027   ⟹   XP_038959955
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,953,983 (-)NCBI
RefSeq Acc Id: XM_039104028   ⟹   XP_038959956
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,611,773 (-)NCBI
RefSeq Acc Id: XM_039104029   ⟹   XP_038959957
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,611,773 (-)NCBI
RefSeq Acc Id: XM_039104030   ⟹   XP_038959958
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,611,773 (-)NCBI
RefSeq Acc Id: XM_039104031   ⟹   XP_038959959
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,675,317 (-)NCBI
RefSeq Acc Id: XM_039104032   ⟹   XP_038959960
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,675,322 (-)NCBI
RefSeq Acc Id: XM_039104033   ⟹   XP_038959961
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,611,773 (-)NCBI
RefSeq Acc Id: XM_039104034   ⟹   XP_038959962
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,611,773 (-)NCBI
RefSeq Acc Id: XM_039104036   ⟹   XP_038959964
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,611,773 (-)NCBI
RefSeq Acc Id: XM_039104037   ⟹   XP_038959965
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,675,316 (-)NCBI
RefSeq Acc Id: XM_039104038   ⟹   XP_038959966
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,675,311 (-)NCBI
RefSeq Acc Id: XM_039104039   ⟹   XP_038959967
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,675,316 (-)NCBI
RefSeq Acc Id: XM_039104040   ⟹   XP_038959968
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,675,311 (-)NCBI
RefSeq Acc Id: XM_039104041   ⟹   XP_038959969
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,611,773 (-)NCBI
RefSeq Acc Id: XM_039104042   ⟹   XP_038959970
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,675,307 (-)NCBI
RefSeq Acc Id: XM_039104043   ⟹   XP_038959971
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,675,312 (-)NCBI
RefSeq Acc Id: XM_039104044   ⟹   XP_038959972
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,675,310 (-)NCBI
RefSeq Acc Id: XM_039104045   ⟹   XP_038959973
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,675,307 (-)NCBI
RefSeq Acc Id: XM_039104046   ⟹   XP_038959974
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22215,378,028 - 215,675,311 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038959921 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959922 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959923 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959924 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959925 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959926 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959927 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959928 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959929 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959931 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959932 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959933 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959934 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959935 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959936 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959937 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959938 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959939 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959940 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959942 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959943 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959944 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959945 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959946 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959947 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959948 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959949 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959950 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959951 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959953 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959954 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959955 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959956 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959957 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959958 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959959 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959960 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959961 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959962 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959964 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959965 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959966 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959967 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959968 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959969 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959970 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959971 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959972 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959973 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959974 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB47551 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: ENSRNOP00000073918   ⟸   ENSRNOT00000080470
RefSeq Acc Id: ENSRNOP00000070916   ⟸   ENSRNOT00000080637
RefSeq Acc Id: ENSRNOP00000052477   ⟸   ENSRNOT00000055615
RefSeq Acc Id: ENSRNOP00000075511   ⟸   ENSRNOT00000084756
RefSeq Acc Id: ENSRNOP00000014962   ⟸   ENSRNOT00000014962
RefSeq Acc Id: ENSRNOP00000075731   ⟸   ENSRNOT00000089534
RefSeq Acc Id: ENSRNOP00000060715   ⟸   ENSRNOT00000068415
RefSeq Acc Id: ENSRNOP00000035307   ⟸   ENSRNOT00000037255
RefSeq Acc Id: ENSRNOP00000015386   ⟸   ENSRNOT00000015386
RefSeq Acc Id: ENSRNOP00000064466   ⟸   ENSRNOT00000074002
RefSeq Acc Id: XP_038959939   ⟸   XM_039104011
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038959955   ⟸   XM_039104027
- Peptide Label: isoform X32
RefSeq Acc Id: XP_038959929   ⟸   XM_039104001
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038959943   ⟸   XM_039104015
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038959948   ⟸   XM_039104020
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038959936   ⟸   XM_039104008
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038959924   ⟸   XM_039103996
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038959945   ⟸   XM_039104017
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038959953   ⟸   XM_039104025
- Peptide Label: isoform X30
RefSeq Acc Id: XP_038959942   ⟸   XM_039104014
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038959947   ⟸   XM_039104019
- Peptide Label: isoform X25
RefSeq Acc Id: XP_038959946   ⟸   XM_039104018
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038959931   ⟸   XM_039104003
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038959925   ⟸   XM_039103997
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038959926   ⟸   XM_039103998
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038959921   ⟸   XM_039103993
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038959922   ⟸   XM_039103994
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038959944   ⟸   XM_039104016
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038959932   ⟸   XM_039104004
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038959923   ⟸   XM_039103995
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038959940   ⟸   XM_039104012
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038959937   ⟸   XM_039104009
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038959928   ⟸   XM_039104000
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038959949   ⟸   XM_039104021
- Peptide Label: isoform X27
RefSeq Acc Id: XP_038959935   ⟸   XM_039104007
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038959933   ⟸   XM_039104005
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038959950   ⟸   XM_039104022
- Peptide Label: isoform X28
RefSeq Acc Id: XP_038959951   ⟸   XM_039104023
- Peptide Label: isoform X29
RefSeq Acc Id: XP_038959960   ⟸   XM_039104032
- Peptide Label: isoform X37
RefSeq Acc Id: XP_038959959   ⟸   XM_039104031
- Peptide Label: isoform X36
RefSeq Acc Id: XP_038959967   ⟸   XM_039104039
- Peptide Label: isoform X43
RefSeq Acc Id: XP_038959965   ⟸   XM_039104037
- Peptide Label: isoform X41
RefSeq Acc Id: XP_038959971   ⟸   XM_039104043
- Peptide Label: isoform X47
RefSeq Acc Id: XP_038959974   ⟸   XM_039104046
- Peptide Label: isoform X50
RefSeq Acc Id: XP_038959968   ⟸   XM_039104040
- Peptide Label: isoform X44
RefSeq Acc Id: XP_038959966   ⟸   XM_039104038
- Peptide Label: isoform X42
RefSeq Acc Id: XP_038959972   ⟸   XM_039104044
- Peptide Label: isoform X48
RefSeq Acc Id: XP_038959973   ⟸   XM_039104045
- Peptide Label: isoform X49
RefSeq Acc Id: XP_038959970   ⟸   XM_039104042
- Peptide Label: isoform X46
RefSeq Acc Id: XP_038959927   ⟸   XM_039103999
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038959962   ⟸   XM_039104034
- Peptide Label: isoform X39
RefSeq Acc Id: XP_038959957   ⟸   XM_039104029
- Peptide Label: isoform X34
RefSeq Acc Id: XP_038959964   ⟸   XM_039104036
- Peptide Label: isoform X40
RefSeq Acc Id: XP_038959958   ⟸   XM_039104030
- Peptide Label: isoform X35
RefSeq Acc Id: XP_038959969   ⟸   XM_039104041
- Peptide Label: isoform X45
RefSeq Acc Id: XP_038959961   ⟸   XM_039104033
- Peptide Label: isoform X38
RefSeq Acc Id: XP_038959956   ⟸   XM_039104028
- Peptide Label: isoform X33
RefSeq Acc Id: XP_038959938   ⟸   XM_039104010
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038959934   ⟸   XM_039104006
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038959954   ⟸   XM_039104026
- Peptide Label: isoform X31
Protein Domains
ANK_REP_REGION   Death   ZU5

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620156 AgrOrtholog
Ensembl Genes ENSRNOG00000011076 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000014962 UniProtKB/TrEMBL
  ENSRNOP00000015386 UniProtKB/TrEMBL
  ENSRNOP00000035307 UniProtKB/TrEMBL
  ENSRNOP00000052477 UniProtKB/TrEMBL
  ENSRNOP00000060715 UniProtKB/TrEMBL
  ENSRNOP00000064466 UniProtKB/TrEMBL
  ENSRNOP00000070916 UniProtKB/TrEMBL
  ENSRNOP00000073918 UniProtKB/TrEMBL
  ENSRNOP00000075511 UniProtKB/TrEMBL
  ENSRNOP00000075731 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014962 UniProtKB/TrEMBL
  ENSRNOT00000015386 UniProtKB/TrEMBL
  ENSRNOT00000037255 UniProtKB/TrEMBL
  ENSRNOT00000055615 UniProtKB/TrEMBL
  ENSRNOT00000068415 UniProtKB/TrEMBL
  ENSRNOT00000074002 UniProtKB/TrEMBL
  ENSRNOT00000080470 UniProtKB/TrEMBL
  ENSRNOT00000080637 UniProtKB/TrEMBL
  ENSRNOT00000084756 UniProtKB/TrEMBL
  ENSRNOT00000089534 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_dom UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  Ankyrin_UPA UniProtKB/TrEMBL
  DEATH-like_dom UniProtKB/TrEMBL
  Death_domain UniProtKB/TrEMBL
  ZU5 UniProtKB/TrEMBL
NCBI Gene 362036 ENTREZGENE
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  Death UniProtKB/TrEMBL
  UPA_2 UniProtKB/TrEMBL
  ZU5 UniProtKB/TrEMBL
PhenoGen Ank2 PhenoGen
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  DEATH_DOMAIN UniProtKB/TrEMBL
  ZU5 UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  DEATH UniProtKB/TrEMBL
  ZU5 UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
  DEATH_like UniProtKB/TrEMBL
UniProt A0A0G2JZ56_RAT UniProtKB/TrEMBL
  A0A0G2K6R9_RAT UniProtKB/TrEMBL
  A0A0G2KAS9_RAT UniProtKB/TrEMBL
  A0A0G2KBB9_RAT UniProtKB/TrEMBL
  D4A4Q9_RAT UniProtKB/TrEMBL
  F1LM42_RAT UniProtKB/TrEMBL
  F1LZM2_RAT UniProtKB/TrEMBL
  F1M5N3_RAT UniProtKB/TrEMBL
  F1M9N9_RAT UniProtKB/TrEMBL
  M0R511_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Ank2  ankyrin 2  LOC103691695  uncharacterized LOC103691695  Data Merged 737654 PROVISIONAL
2016-08-18 Ank2  ankyrin 2  Ank2  ankyrin 2, neuronal  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-25 LOC103691695  uncharacterized LOC103691695      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-10-14 Ank2  ankyrin 2, neuronal  Ank3_predicted  ankyrin 3, epithelial (predicted)  Data Merged 737654 APPROVED
2005-01-20 Ank2  ankyrin 2, neuronal    ankyrin 2, brain  Name updated 1299863 APPROVED
2005-01-12 Ank3_predicted  ankyrin 3, epithelial (predicted)      Symbol and Name status set to approved 70820 APPROVED
2005-01-12 Ank2_predicted  ankyrin 2, neuronal (predicted)      Symbol and Name status set to approved 70820 APPROVED
2002-08-07 Ank2  ankyrin 2, brain      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed only in axons 634625
gene_protein 440 kDa 634625