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Gene: Hipk3 (homeodomain interacting protein kinase 3) Rattus norvegicus

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Symbol:

Hipk3

Name:

homeodomain interacting protein kinase 3

RGD ID:

619884

Description:

Predicted to enable protein serine/threonine kinase activity and protein tyrosine kinase activity. Predicted to be involved in several processes, including mRNA transcription; negative regulation of JUN kinase activity; and protein phosphorylation. Predicted to be located in cytosol; nuclear body; and plasma membrane. Predicted to be active in PML body and cytoplasm. Orthologous to human HIPK3 (homeodomain interacting protein kinase 3); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

androgen receptor-interacting nuclear protein kinase; ANPK; homeodomain-interacting protein kinase 3; nuclear serine/threonine protein kinase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	111,251,863 - 111,322,815 (-)	NCBI		GRCr8
mRatBN7.2	3	90,796,980 - 90,866,701 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	90,800,296 - 90,867,759 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	94,290,658 - 94,359,861 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	102,889,729 - 102,958,923 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	100,719,735 - 100,789,097 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	94,349,778 - 94,419,185 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	94,352,969 - 94,419,048 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	100,985,832 - 101,054,939 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	89,749,949 - 89,816,787 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	89,646,381 - 89,713,215 (-)	NCBI
Celera	3	89,860,648 - 89,926,769 (-)	NCBI		Celera
Cytogenetic Map	3	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloroprene (ISO)

cisplatin (ISO)

clofibrate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

DDE (ISO)

DDT (EXP)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

doxorubicin (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

fulvestrant (ISO)

hypochlorous acid (ISO)

isoprenaline (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

manganese(II) chloride (EXP)

MeIQx (ISO)

methidathion (ISO)

methoxyacetic acid (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

rimonabant (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

T-2 toxin (EXP)

testosterone (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triptonide (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA)

chromatin remodeling (IEA)

mRNA transcription (IEA,ISO)

negative regulation of apoptotic process (IEA,ISO)

negative regulation of JUN kinase activity (ISO)

peptidyl-serine phosphorylation (ISO)

peptidyl-threonine phosphorylation (ISO)

protein phosphorylation (ISO)

Cellular Component

cytoplasm (IBA,ISO)

cytosol (IEA,ISO)

nuclear body (IEA,ISO)

nucleus (IBA)

plasma membrane (IEA,ISO)

PML body (IBA,ISO)

Molecular Function

3-phosphoinositide-dependent protein kinase activity (IEA)

AMP-activated protein kinase activity (IEA)

ATP binding (IEA)

DNA-dependent protein kinase activity (IEA)

eukaryotic translation initiation factor 2alpha kinase activity (IEA)

histone H2AS1 kinase activity (IEA)

histone H2AS121 kinase activity (IEA)

histone H2AT120 kinase activity (IEA)

histone H2AXS139 kinase activity (IEA)

histone H2BS14 kinase activity (IEA)

histone H2BS36 kinase activity (IEA)

histone H3S10 kinase activity (IEA)

histone H3S28 kinase activity (IEA)

histone H3S57 kinase activity (IEA)

histone H3T11 kinase activity (IEA)

histone H3T3 kinase activity (IEA)

histone H3T45 kinase activity (IEA)

histone H3T6 kinase activity (IEA)

histone H4S1 kinase activity (IEA)

protein binding (ISO)

protein kinase activity (ISO)

protein serine kinase activity (IEA)

protein serine/threonine kinase activity (IBA,IEA,ISO)

protein tyrosine kinase activity (IBA)

Rho-dependent protein serine/threonine kinase activity (IEA)

ribosomal protein S6 kinase activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Activation of androgen receptor function by a novel nuclear protein kinase.	Moilanen AM, etal., Mol Biol Cell 1998 Sep;9(9):2527-43.
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10919273	PMID:11034606	PMID:12477932	PMID:14766760	PMID:17210646	PMID:32356246	PMID:33660818	PMID:37581369

Genomics

Comparative Map Data

Hipk3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	111,251,863 - 111,322,815 (-)	NCBI		GRCr8
mRatBN7.2	3	90,796,980 - 90,866,701 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	90,800,296 - 90,867,759 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	94,290,658 - 94,359,861 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	102,889,729 - 102,958,923 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	100,719,735 - 100,789,097 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	94,349,778 - 94,419,185 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	94,352,969 - 94,419,048 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	100,985,832 - 101,054,939 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	89,749,949 - 89,816,787 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	89,646,381 - 89,713,215 (-)	NCBI
Celera	3	89,860,648 - 89,926,769 (-)	NCBI		Celera
Cytogenetic Map	3	q32	NCBI

HIPK3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	33,256,672 - 33,357,023 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	33,256,672 - 33,357,023 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	33,278,218 - 33,378,569 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	33,235,744 - 33,332,515 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	33,264,532 - 33,331,690	NCBI
Celera	11	33,425,771 - 33,522,554 (+)	NCBI		Celera
Cytogenetic Map	11	p13	NCBI
HuRef	11	32,972,945 - 33,073,572 (+)	NCBI		HuRef
CHM1_1	11	33,277,522 - 33,377,905 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	33,392,109 - 33,492,540 (+)	NCBI		T2T-CHM13v2.0

Hipk3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	104,256,826 - 104,324,834 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	104,256,826 - 104,324,791 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	104,426,481 - 104,494,489 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	104,426,481 - 104,494,446 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	104,266,638 - 104,334,646 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	104,230,603 - 104,295,083 (-)	NCBI		MGSCv36	mm8
Celera	2	105,663,732 - 105,714,737 (-)	NCBI		Celera
Cytogenetic Map	2	E2	NCBI
cM Map	2	54.74	NCBI

Hipk3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	12,845,258 - 12,904,144 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	12,841,781 - 12,928,194 (-)	NCBI	ChiLan1.0	ChiLan1.0

HIPK3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	35,477,457 - 35,577,426 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	35,482,178 - 35,582,117 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	33,230,731 - 33,330,617 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	33,114,534 - 33,212,783 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	33,114,534 - 33,212,783 (+)	Ensembl	panpan1.1		panPan2

HIPK3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	34,305,208 - 34,397,593 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	34,308,584 - 34,397,511 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	33,917,398 - 34,009,903 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	34,915,823 - 35,008,659 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	34,915,831 - 35,008,567 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	34,485,400 - 34,577,749 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	34,068,380 - 34,161,131 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	34,704,139 - 34,796,361 (-)	NCBI		UU_Cfam_GSD_1.0

Hipk3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	31,445,805 - 31,538,172 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936533	4,570,597 - 4,662,395 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936533	4,570,600 - 4,662,296 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HIPK3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	27,580,129 - 27,685,843 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	27,580,125 - 27,685,926 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	30,028,373 - 30,057,948 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HIPK3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	31,944,760 - 32,009,328 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	31,944,749 - 32,009,297 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	129,033,340 - 129,127,349 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hipk3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	13,853,515 - 13,972,569 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	13,854,461 - 13,972,012 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Hipk3
384 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	9
Count of miRNA genes:	7
Interacting mature miRNAs:	9
Transcripts:	ENSRNOT00000015775
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	51490129	111359995	Rat
1358293	Bw38	Body weight QTL 38	6	0.0000031	body mass (VT:0001259)	body weight (CMO:0000012)	3	74364268	119364268	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	96509147	141509147	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	73592512	136118980	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	85062224	136118980	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	85062224	136118980	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	93829559	138829559	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	101255536	134750886	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	96509147	141509147	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	70311536	115311536	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	110225882	155225882	Rat
631200	Cm25	Cardiac mass QTL 25	4.8	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	3	81541464	126563126	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	90755164	141509147	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	110634702	155634702	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat

Markers in Region

D3Rat263

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	90,825,641 - 90,825,874 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	94,378,437 - 94,378,669	NCBI	Rnor6.0
Rnor_5.0	3	101,014,491 - 101,014,723	UniSTS	Rnor5.0
RGSC_v3.4	3	89,775,293 - 89,775,525	RGD	RGSC3.4
RGSC_v3.4	3	89,775,294 - 89,775,526	UniSTS	RGSC3.4
RGSC_v3.1	3	89,671,721 - 89,671,953	RGD
Celera	3	89,885,993 - 89,886,225	UniSTS
SHRSP x BN Map	3	47.2698	UniSTS
SHRSP x BN Map	3	47.2698	RGD
Cytogenetic Map	3	q32	UniSTS

D3Got302

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	90,827,227 - 90,827,392 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	94,380,023 - 94,380,187	NCBI	Rnor6.0
Rnor_5.0	3	101,016,077 - 101,016,241	UniSTS	Rnor5.0
RGSC_v3.4	3	89,776,880 - 89,777,044	UniSTS	RGSC3.4
Celera	3	89,887,579 - 89,887,743	UniSTS
Cytogenetic Map	3	q32	UniSTS

HIPK3__6530

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	90,800,246 - 90,800,791 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	94,353,045 - 94,353,589	NCBI	Rnor6.0
Rnor_5.0	3	100,989,099 - 100,989,643	UniSTS	Rnor5.0
RGSC_v3.4	3	89,749,900 - 89,750,444	UniSTS	RGSC3.4
Celera	3	89,860,599 - 89,861,143	UniSTS
Cytogenetic Map	3	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001395080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_031787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF036959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC100068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015775 ⟹ ENSRNOP00000015775

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	90,800,296 - 90,866,312 (-)	Ensembl
Rnor_6.0 Ensembl	3	94,353,094 - 94,419,048 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089554 ⟹ ENSRNOP00000073200

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	90,800,299 - 90,865,962 (-)	Ensembl
Rnor_6.0 Ensembl	3	94,352,969 - 94,418,711 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105868 ⟹ ENSRNOP00000085704

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	90,800,299 - 90,867,759 (-)	Ensembl

RefSeq Acc Id:

NM_001395080 ⟹ NP_001382009

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	111,251,863 - 111,321,192 (-)	NCBI
mRatBN7.2	3	90,796,982 - 90,866,312 (-)	NCBI

RefSeq Acc Id:

NM_031787 ⟹ NP_113975

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	111,251,863 - 111,321,192 (-)	NCBI
mRatBN7.2	3	90,796,982 - 90,866,312 (-)	NCBI
Rnor_6.0	3	94,353,094 - 94,419,048 (-)	NCBI
Rnor_5.0	3	100,985,832 - 101,054,939 (-)	NCBI
RGSC_v3.4	3	89,749,949 - 89,816,787 (-)	RGD
Celera	3	89,860,648 - 89,926,769 (-)	RGD

Sequence:

show sequence

AAGGTTGCGCAACGGCTCTTCCCAGCAACCGAAGTTTTGTTTGGTCCCACGGGGGGCCCCCTCT
TTCAGCTCGGTGGCTCTAGGCCGTCACTACGGAGACCTCGTTCCTTTCATTGATGGGAGCGAAC
ACCAACGTGCACACACGCCGCCGGAKCGCCCAGCCCCGTGGCTGTGCCGCGGAGGCTTGGTGGC
CCTGTCACCGGCGTCGCGGGGCGGCGGGTTTGGAGGGTGTCAACTCTGGGGACGTGCGTGCGTG
TGATTGTTGGGGAGGAGAAATGTGATCCGCGGCTTCGCGTCCCCAGCGGCGGCGGGAGGAAGGC
GTGGCGGCCGCGCGGCGGGGCTGTTGCCGGCTTCTCTCGTTACGGCGGCGGCGGCCCTCTTCCC
TTCGCGCTGGGGGAGATCAGCGGAAAGGACTCGGGACCAGAATGTCTGTTTTCCTGTCTGAGGG
GAGACGGCTGTTGTAAAATGGTATGGCCTCACAAGTCTTGGTCTACCCACCATATGTTTATCAA
ACTCAGTCAAGTGCCTTTTGTAGTGTGAAGAAACTGAAAGTAGAGCCCAGCGGTTGTGTTTTCC
AGGAAAGAGCCTGCCCTCAGATCCATGTGAATGGTAGACACTTTGGAAATCCTCTTCCTTCCAC
GAAGGGTAGTGCTTTCCAGACAAAGATACCATTCTCTAAACCTCGAGGACACAGCTTTTCACTG
CAGGCAGGGGCCATTGTTGTCAAAGACACTGCCGGTGCTACAAAGGTCATAGCAGCTCAGGCGC
AGCAGGCTGGAGTGGAGGCACCTCGGGCCGTGGTGTGGAGAAACAGGCTACATTTCCTAGGAGG
TCCCCAGCGATGCGGGTTAAAGCGCAAGAGTGAGGAGTTGGATAATCACAGCGGCGCGATGCAG
ATTGTCGATGAACTGTCCATACTTCCTGCAATGTTGCAAACCAACATGGGAAACCCAGTGACAG
TTGTGACAGCGACCACAGGATCGAAACAGAACTGTACCAGTGGGGAAGGTGACTATCAGTTAGT
GCAGCACGAAGTCTTGTGCTCTGTGAAAAACACATATGAAGTCCTGGATTTTCTTGGTCGTGGC
ACTTTCGGCCAGGTTGTTAAATGCTGGAAGAGAGGGACAAATGAAATTGTAGCCATTAAAATTT
TGAAGAATCACCCTTCGTATGCACGTCAAGGGCAGATAGAAGTGAGCATCTTAGCAAGGCTCAG
TACTGAGAACGCTGATGAGTATAACTTTGTGCGAGCCTATGAGTGCTTCCAGCACCGCAACCAT
ACCTGCCTGGTCTTTGAGATGCTGGAGCAGAACCTGTATGACTTCCTGAAACAGAATAAATTCA
GTCCCTTGCCCCTAAAGGTGATCCGGCCCGTTCTTCAGCAAGTGGCCACTGCACTGAAGAAATT
AAAAAGTCTTGGTTTAATTCATGCTGACCTTAAACCAGAGAATATTATGTTGGTGGATCCTGTT
CGACAGCCATACAGGGTTAAAGTGATAGACTTTGGATCGGCCAGTCATGTATCAAAGACTGTTT
GCTCAACGTATCTACAATCTCGGTACTATAGAGCTCCAGAGATTATATTGGGGTTGCCGTTTTG
TGAAGCCATAGACATGTGGTCACTGGGATGCGTGATTGCAGAGTTATTCCTTGGATGGCCACTC
TACCCGGGAGCCTTGGAGTATGACCAGATTCGATACATTTCTCAGACTCAAGGTTTACCAGGAG
AACAATTGTTGAATGTGGGTACAAAATCCACAAGATTTTTTTGCAGAGAAACAGATATGTCTCA
TTCTGGTTGGAGGTTAAAGACACTGGAAGAGCATGAAGCAGAGACAGGAATGAAGTCTAAAGAG
GCCAGAAAGTACATATTCAACAGTCTGGACGATATAGTGCATGTGAACACAGTGATGGACTTGG
AAGGAAGTGATCTCTTGGCTGAGAAAGCTGATAGAAGAGAATTTGTTAGTCTGTTGAAGAAAAT
GTTGCTGATTGATGCAGATTTAAGAATTACTCCGATCGAGACTCTGAACCACCCATTCGTTAGT
ATGAAGCACCTACTAGATTTTCCTCACAGCAGCCATGTAAAGTCCTGTTTTCATATCATGGATA
TTTGTAAGTCTCCGAGTTCATGTGAAACAAACAACCACAGTAAAATGTCACTCTTACGACCAGT
TGCATCCAATGGCACTGCTGCTCTAGCGGCAAACTTTACTAAAGTCGGAACATTAAGAAGTCAG
GCGTTGACCACATCTGCTCACTCGGTCGTGCACCATGGTATACCTCTGCAGGCGGGGACCGCAC
AGTTCGGTTGTGGTGATGCTTTTCATCAGACCCTGATTATCTGTCCCCCAGCTATTCAAGGTAT
TCCCGCAGCACATGGTAAGCCCACCAGTTATTCCATAAGGGTGGACAACACAGTTCCGCTTGTG
ACTCAGGCCCCAGCTGTACAGCCTCTGCAGATCCGACCAGGAGTCCTTTCACAGACATGGTCTG
GTCGAACACAGCAGATGCTAATACCTGCCTGGCAGCAGGTAACACCCATGGCTCCTGCTGCTGC
AACACTAACTTCTGAAGGCATGGCTGGTTCACAGAGGCTTGGAGACTGGGGGAAAATGATTCCA
CACAGCAATCATTATAACTCCGTGATGCCGCCACCTCTTCTGACCAACCAGATAACATTGTCGG
CCCCTCAGCCTATCAGCGTAGGCATCGCACATGTTGTCTGGCCTCAGCCTGCCACTACCAAGAA
AAATAAGCTGTGCCAGAACAGGAGTAATTCATTGCAGAACACCAATGTCCCACATTCAGCATTT
ATTTCTCCAAAGATAATCAGTGGGAAAGAAGTTGAGGAAGTAAGTTGTGTAGAAACACAGGACA
ATCATACCTCAGAAGGAGAGGCAAGAACTTGCCATGAAGCGTCTGTCAGACAGGATTCTTCAGT
TTCAGACAAACAGCGGCAAACCATCATCATTGCCGACTCCCCAAGTCCTGCCGTGAGTGTGATC
ACCATTAGCAGTGACACTGATGACGAAGAGACCTCACCCAGACCTTCACTCCGAGAGTGTAAAG
GTAGTCTGGATTGTGAAGCTTGCCAAAGCACTTTGAATATTGATCGGATGTGTTCACTCAGCAG
TCCCGACAGCACTCTGAGTACCAGCTCCTCAGGGCAGTCCAGCCCATCCCCTTGCAAAAGACCG
AACAGTATGTCAGATGATGAACAGGAAAGTGGGTGTGAGACTGTGGACGGCTCTCCAACGTCAG
ACTCCTCGGGGCATGACAGTCCATTTGCAGAGAGCAGTTTTGTGGAAGACACTCCTCAAAACCC
AGAGCTGGGGACTTGTGCTGGCACAGAGGCCAAGCCAGCTCTTAGCACTGCTGTGGAGCCACCA
GTGGGGACAGAGCGTGGCCTGAACGTCGATGCGCACATGGCCAACACAGATTCTACATGCCAGC
CATTGACAAAAGGCCAGCCCGCCCCTGGAAAGCTGAACCAGCCCTCTGCCTCGGCTGCTCGTCA
GCAAAAGCCCACATCAGCATTCCAGCAGCAGCATTTGAACCTGAGCCAGGTTCAGCATTTCGGA
ACTGGGCATCAAGAATGGAATGGAAACTTTGGGCATCGAAGACAGCAAGCATATATTCCTACTA
GTGTTACCAGTAATCCATTCACTCTTTCTCACGGAAGTCCCAACCACACAGCAGTGCATGCCCA
TCTGGCTGGAAGTGCGCACCTCGGAGGACAGCCCACTCTGCTTCCGTACCCGCCATCAACTGCC
CTCAGTAGTGCTGCACCCGTGGCCCACCTCCTAGCCTCTCCGTGTACCTCAAGACCTATGTTAC
AGCATCCAACTTATAATATCTCCCATCCCAGTGGCATAGTTCACCAAGTCCCCGTGGGCATAAA
TCCCCGCCTGTTACCATCCCCGACCATTCATCAGACTCAGTACAAACCAATCTTCCCTCCACAT
TCTTACATTGCAGCATCGCCTGCATATACTGGATTTCCATTGAGTCCAACAAAACTCAGCCAGT
ATCCATATATGTGAAAACTCGAAAGCAGTTTATTGAGGAAGCTCAATGATACAAACGTTTGATT
AAAAATAAAAACATGGTATGGAAT

hide sequence

RefSeq Acc Id:

XM_008762072 ⟹ XP_008760294

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	111,251,863 - 111,322,813 (-)	NCBI
mRatBN7.2	3	90,796,980 - 90,845,242 (-)	NCBI
Rnor_6.0	3	94,349,778 - 94,419,185 (-)	NCBI

Sequence:

show sequence

CGGTTCCCGAAGGCCGGCGCCACACCAGGCCCGAGGCGGCCGGACGCGAGGACTGCGCGTGCTT
TCCGCGCGCGCTTGGCGCAGCCTCCGGGAAGCCGCCCTGGCCGCGCTGGGCAGTCCGGGCCTTC
CCACAAGCCAAGGTTGCGCAACGGCTCTTCCCAGCAACCGAAGTTTTGTTTGGTCCCACGGGGG
GCCCCCTCTTTCAGCTCGGTGGCTCTAGGCCGTCACTACGGAGACCTCGTTCCTTTCATTGATG
GGAGCGAACACCAACGTGCACACACGCCGCCGGAGCGCCCAGCCCCGTGGCTGTGCCGCGGAGG
CTTGGTGGCCCTGTCACCGGCGTCGCGGGGCGGCGGGTTTGGAGGGTGTCAACTCTGGGGACGT
GCGTGCGTGTGATTGTTGGGGAGGAGAAATGTGATCCGCGGCTTCGCGTCCCCAGCGGCGGCGG
GAGGAAGGCGTGGCGGCCGCGCGGCGGGGCTGTTGCCGGCTTCTCTCGTTACGGCGGCGGCGGC
CCTCTTCCCTTCGCGCTGGGGGAGATCAGCGGAAAGGACTCGGGACCAGAATGTCTGTTTTCCT
GTCTGAGGGGAGACGGCTGTTGTAAAATGGTATGGCCTCACAAGTCTTGGTCTACCCACCATAT
GTTTATCAAACTCAGTCAAGTGCCTTTTGTAGTGTGAAGAAACTGAAAGTAGAGCCCAGCGGTT
GTGTTTTCCAGGAAAGAGCCTGCCCTCAGATCCATGTGAATGGTAGACACTTTGGAAATCCTCT
TCCTTCCACGAAGGGTAGTGCTTTCCAGACAAAGATACCATTCTCTAAACCTCGAGGACACAGC
TTTTCACTGCAGGCAGGGGCCATTGTTGTCAAAGACACTGCCGGTGCTACAAAGGTCATAGCAG
CTCAGGCGCAGCAGGCTGGAGTGGAGGCACCTCGGGCCGTGGTGTGGAGAAACAGGCTACATTT
CCTAGGAGGTCCCCAGCGATGCGGGTTAAAGCGCAAGAGTGAGGAGTTGGATAATCACAGCGGC
GCGATGCAGATTGTCGATGAACTGTCCATACTTCCTGCAATGTTGCAAACCAACATGGGAAACC
CAGTGACAGTTGTGACAGCGACCACAGGATCGAAACAGAACTGTACCAGTGGGGAAGGTGACTA
TCAGTTAGTGCAGCACGAAGTCTTGTGCTCTGTGAAAAACACATATGAAGTCCTGGATTTTCTT
GGTCGTGGCACTTTCGGCCAGGTTGTTAAATGCTGGAAGAGAGGGACAAATGAAATTGTAGCCA
TTAAAATTTTGAAGAATCACCCTTCGTATGCACGTCAAGGGCAGATAGAAGTGAGCATCTTAGC
AAGGCTCAGTACTGAGAACGCTGATGAGTATAACTTTGTGCGAGCCTATGAGTGCTTCCAGCAC
CGCAACCATACCTGCCTGGTCTTTGAGATGCTGGAGCAGAACCTGTATGACTTCCTGAAACAGA
ATAAATTCAGTCCCTTGCCCCTAAAGGTGATCCGGCCCGTTCTTCAGCAAGTGGCCACTGCACT
GAAGAAATTAAAAAGTCTTGGTTTAATTCATGCTGACCTTAAACCAGAGAATATTATGTTGGTG
GATCCTGTTCGACAGCCATACAGGGTTAAAGTGATAGACTTTGGATCGGCCAGTCATGTATCAA
AGACTGTTTGCTCAACGTATCTACAATCTCGGTACTATAGAGCTCCAGAGATTATATTGGGGTT
GCCGTTTTGTGAAGCCATAGACATGTGGTCACTGGGATGCGTGATTGCAGAGTTATTCCTTGGA
TGGCCACTCTACCCGGGAGCCTTGGAGTATGACCAGATTCGATACATTTCTCAGACTCAAGGTT
TACCAGGAGAACAATTGTTGAATGTGGGTACAAAATCCACAAGATTTTTTTGCAGAGAAACAGA
TATGTCTCATTCTGGTTGGAGGTTAAAGACACTGGAAGAGCATGAAGCAGAGACAGGAATGAAG
TCTAAAGAGGCCAGAAAGTACATATTCAACAGTCTGGACGATATAGTGCATGTGAACACAGTGA
TGGACTTGGAAGGAAGTGATCTCTTGGCTGAGAAAGCTGATAGAAGAGAATTTGTTAGTCTGTT
GAAGAAAATGTTGCTGATTGATGCAGATTTAAGAATTACTCCGATCGAGACTCTGAACCACCCA
TTCGTTAGTATGAAGCACCTACTAGATTTTCCTCACAGCAGCCATGTAAAGTCCTGTTTTCATA
TCATGGATATTTGTAAGTCTCCGAGTTCATGTGAAACAAACAACCACAGTAAAATGTCACTCTT
ACGACCAGTTGCATCCAATGGCACTGCTGCTCTAGCGGCAAACTTTACTAAAGTCGGAACATTA
AGAAGTCAGGCGTTGACCACATCTGCTCACTCGGTCGTGCACCATGGTATACCTCTGCAGGCGG
GGACCGCACAGTTCGGTTGTGGTGATGCTTTTCATCAGACCCTGATTATCTGTCCCCCAGCTAT
TCAAGGTATTCCCGCAGCACATGGTAAGCCCACCAGTTATTCCATAAGGGTGGACAACACAGTT
CCGCTTGTGACTCAGGCCCCAGCTGTACAGCCTCTGCAGATCCGACCAGGAGTCCTTTCACAGA
CATGGTCTGGTCGAACACAGCAGATGCTAATACCTGCCTGGCAGCAGGTAACACCCATGGCTCC
TGCTGCTGCAACACTAACTTCTGAAGGCATGGCTGGTTCACAGAGGCTTGGAGACTGGGGGAAA
ATGATTCCACACAGCAATCATTATAACTCCGTGATGCCGCCACCTCTTCTGACCAACCAGATAA
CATTGTCGGCCCCTCAGCCTATCAGCGTAGGCATCGCACATGTTGTCTGGCCTCAGCCTGCCAC
TACCAAGAAAAATAAGCTGTGCCAGAACAGAGGTATTTTGGTAAAACTAATGGAGTGGGAGCCA
GGAAGAGAGGAAATAAATGCTTTTCGTTGGAGTAATTCATTGCAGAACACCAATGTCCCACATT
CAGCATTTATTTCTCCAAAGATAATCAGTGGGAAAGAAGTTGAGGAAGTAAGTTGTGTAGAAAC
ACAGGACAATCATACCTCAGAAGGAGAGGCAAGAACTTGCCATGAAGCGTCTGTCAGACAGGAT
TCTTCAGTTTCAGACAAACAGCGGCAAACCATCATCATTGCCGACTCCCCAAGTCCTGCCGTGA
GTGTGATCACCATTAGCAGTGACACTGATGACGAAGAGACCTCACCCAGACCTTCACTCCGAGA
GTGTAAAGGTAGTCTGGATTGTGAAGCTTGCCAAAGCACTTTGAATATTGATCGGATGTGTTCA
CTCAGCAGTCCCGACAGCACTCTGAGTACCAGCTCCTCAGGGCAGTCCAGCCCATCCCCTTGCA
AAAGACCGAACAGTATGTCAGATGATGAACAGGAAAGTGGGTGTGAGACTGTGGACGGCTCTCC
AACGTCAGACTCCTCGGGGCATGACAGTCCATTTGCAGAGAGCAGTTTTGTGGAAGACACTCCT
CAAAACCCAGAGCTGGGGACTTGTGCTGGCACAGAGGCCAAGCCAGCTCTTAGCACTGCTGTGG
AGCCACCAGTGGGGACAGAGCGTGGCCTGAACGTCGATGCGCACATGGCCAACACAGATTCTAC
ATGCCAGCCATTGACAAAAGGCCAGCCCGCCCCTGGAAAGCTGAACCAGCCCTCTGCCTCGGCT
GCTCGTCAGCAAAAGCCCACATCAGCATTCCAGCAGCAGCATTTGAACCTGAGCCAGGTTCAGC
ATTTCGGAACTGGGCATCAAGAATGGAATGGAAACTTGGGGCATCGAAGACAGCAAGCATATAT
TCCTACTAGTGTTACCAGTAATCCATTCACTCTTTCTCACGGAAGTCCCAACCACACAGCAGTG
CATGCCCATCTGGCTGGAAGTGCGCACCTCGGAGGACAGCCCACTCTGCTTCCGTACCCGCCAT
CAACTGCCCTCAGTAGTGCTGCACCCGTGGCCCACCTCCTAGCCTCTCCGTGTACCTCAAGACC
TATGTTACAGCATCCAACTTATAATATCTCCCATCCCAGTGGCATAGTTCACCAAGTCCCCGTG
GGCATAAATCCCCGCCTGTTACCATCCCCGACCATTCATCAGACTCAGTACAAACCAATCTTCC
CTCCACATTCTTACATTGCAGCATCGCCTGCATATACTGGATTTCCATTGAGTCCAACAAAACT
CAGCCAGTATCCATATATGTGAAAACTCGAAAGCAGTTTATTGAGGAAGCTCAATGATACAAAC
GTTTGATTAAAAATAAAAACATGGTATTTAATAAATATTAGCCATGGCACAAGAAAATTATTTT
TGAATCATGTAGACTTGGGTGCAATTTAAACAACTTTGAGCTTTAAAAAACTCACTTTTAATGT
GTTTTGCACATTTGGTATAACTTGTCTTTGGTCATGTATCTTCTTATGTAGTAACTCTATAGAC
AGGTGACTTATGGGAGCAAAATTCCAGTTTTGCTCCTGCTATTTTTTATAAAATTGCCTTCTAA
CTAGTGCAAGACACGTCCACCTTTGGGAAGCCATTCTGTGTCTAGACTTAGAGCAACAGATGCA
CATGTGTCAGAATTCCAGCCTATGAGTGAAGTGTATCGTCTGTGTCTTCGTGTGTACATGTTGG
GGCACTTAACCTAAGCAATTGAGCTATTGTTCTTTACATTGCATGTGTCTTTTGCATGGGCAAA
ATGTTGCCTAGACTTGGCTCTTAATGTTGTTGTAATAATCTCAGCTGCATTGTAAACCGTTCCC
ACACATAGTGCCTTAAATATTTGAGGTTGTTGAAGTTATTACCTATCTGTAAATGTTGGACTGC
AGCACTTAAAATTCAGACCTACTCCTGAGTTCTCTTTCAGTAGAGTAATGTTCCTTTTGGTTTT
GTGTGGTATGATTTCAGATAGTAGCTGCTTTTTCCTTATTAAGAGGGCAGCATGTTTGCTATAG
CTGAATTCTGCTGCCTGATTTTTTTCAGAATGATCTAGCTTCAAGAAAAGCAAGCCGTTCGTAG
TGCTTAAGAAAACTTGATTCAGTAACTAATGGATAGTTGATACCTGTCACACACAGCACAGCAT
TTTATATACTTTTAAGGGAAACTGCAATACAACCTAAGTTTATTTTGGGAGTGTTTGCTGTATA
ATTGGACTTGATAAAATGGTTAGAGGTGCAGTAGGCATGACTTGAGTAGATAATGAAAGAAAAT
GCAAATGCTCATCGACCCATGATGTGCTCTTTCTTGCTTGGGCAGACCATGCAGTATTTAACAC
ATTAGTAGCAGAATATTTACTATTGAAGCTTGAAAAGATGTGAGTTCTTTGTGTGCAATTTTTC
ATTTATGCATGTGAGGAGGTTTTGGTTTTGGTTATTCTTAAGTATTTTTACATTGTAGTACTCG
TTTTTGCTTGTTGGTGGTGTTTGCTTATTTAATACATTCCGTCAGGGACAGAAATTACATGCTT
TTTCTCTTAGGAAGTGTGTATTGGGTTTTTCCCTCCCCCTCTCCCCTTGGTGGTGATGGTGGTG
ATGTTTAAATGAAGTTGCTTTTACAGCACCAAAGACTTAATCATCCATTTCTTATATAAAAGGT
AGCTACATTTTGCATAGACCTCAAGTATATTGTAGTGTAGAGGTGGAATTTAAGGAAAGGTATT
AAACCAAGGCTGTGTTTTAGCTTACAGGCAAGTAATAAATTGTATCATTTATCTTGAATGTATC
ATAGATAAGCTGCTATATAACGATTGCCACTTCAGATAGCTGTGAAATTAGGTGATTAACTAGT
TGTTATTTAGCTTTCTAATTTCTGTATAAGTCTAATTACACAAGATAGAAGCTGGGGTTTTGAT
TTTTTTTTTTACTTTGCTTTTCTGTTTGGAGTGTCATTGTAACTACTGTATTGTAAATGATGGA
AACAATTGCCTATGTTATTTTGGGGTGTGTTATTTGCATCAGTATTTTATCTATTAATGTTTGT
GTTCATTACGGCATATACAAACTTGGATGTATCAATGTAACTTAATTTTTTTATTTTCATACTG
GCATTGTAGACACATGAGAAAGCTGTATCTTGCAGGCTTGACTTAACTTTTTTTTTTTCCTTAA
AAGTCTGGAATATAATCTTACAGCATTTACTGGAATAAACAGTACAAAACATTTGAGTGTAGAA
CTCCAAATGTTTTGGACTGACAGCATTTCCTTCCTAAGCACGTTGCATACCACAAGTACAGTTC
TAGTATGCGCTGATGGTAAGCTAAGAGTGATAACATTTTTCTTTACTCCATGACACAAGCAGTG
TTTTATTTAACAATCATCCATGACATAAACGTGCCTGAAGTTGATTTTAAAAATTACAGTATTA
GATCATAAGATAAAAACCAGCAGCACATTTTTAGTCACTGAAAATGAAGGACTTGATTCCCCCA
CAGGTCTCAGTGTTTTTAGTAATTGATTCTATGCATTTTATATAAATAGAAATATATATAACAC
ACGTTACAAAAAGGAGTGGACTGAGATTAACTTAAAGACGATTTACAGGCGACACGTCTGTGGA
GTCAGTAAGTAACTGCTGCCCGCCACGGCCTCCTCATGCGAGCTAATGGCCTCACTTCTTGGAA
AAGATTCAGTGCTGGCGATGGATGGATGTTTCAGAATCACCAAGTCCACAGATTGATTATGTCA
CAACAGGGAGAAAAGTGGCCTGTAAGCTGTGCTTACTGCCTAAGAAGATGCTCTTTCTTTCTGC
TTTTAAGTTCATGAGTGGAGCAGCCTTGTTAAGTTGACTGTAGAGGGTGACAGTCAGCATTTTC
ATACCGCAGTAATGCTTTCTAAAGGCATGTCACTGTCGAGTGCACTGCTCTTAATTCACTGCAA
TCATGGGCTTTTTAATGTATTTCAAAACTTAAGACTTCAAGATCCCCCTGAAGTCTAATTTTAG
CAAATTGGCAGAAGGATCTGGATTTTACCCCCTCTAAAACTATTTTAATAGTTTTATTTTAATG
TTTTCTTAAATAAAACACTGCATGATTTCCAAGTTGCATATTTGTGTGCTAATTTTGCAAGTGA
ATTTTTAATCAGTTATTTTGATATTTAGGTTTTTTCCTTCAGGGTATTTAATATATTACTCTAT
TAGCAAATCTTTTCATTTTAATATCTCTACTGCTGATTTTAAACTTGGCTTGTGTTCTGTAAAA
GTTAAATCATACACTGCAAGGTGTAGGAAGATTCATTTTAATGATCCCAATGACAGATTCGATG
ACTTAGTTTGAACTATTAACTGTTGAACAGTTTTACTCGCGTGGCTTCTGTCTTGGTTTGATTT
GCTTTGACTTCTGTGCTACACTAGTTTGCCATGTAGCAGTTGCACTGTGCAATATTACAATAAG
GACTGGGAAAACTTTTATGGATGTAATGTCTATTACAGTTTGCGATAGTATTTCTCTCTAGTTC
TCAGTGATTTAAATGTGACCAAGCCTTCTGTACTTTGTCACAAAAAGCGGGTTTTCCAGGTGAC
TATTTTGGTGAGTGTCAAAATAAGAATTTATGGTGTATTACTGTTGATTCACTTTGAATTAAAA
TATATATATTGCAGCAAACA

hide sequence

RefSeq Acc Id:

XM_063284646 ⟹ XP_063140716

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	111,251,863 - 111,322,811 (-)	NCBI

RefSeq Acc Id:

XM_063284647 ⟹ XP_063140717

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	111,251,863 - 111,322,811 (-)	NCBI

RefSeq Acc Id:

XM_063284648 ⟹ XP_063140718

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	111,259,308 - 111,322,815 (-)	NCBI

RefSeq Acc Id:

XM_063284649 ⟹ XP_063140719

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	111,251,863 - 111,262,294 (-)	NCBI

RefSeq Acc Id:

XM_063284650 ⟹ XP_063140720

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	111,251,863 - 111,262,294 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001382009	(Get FASTA)	NCBI Sequence Viewer
	NP_113975	(Get FASTA)	NCBI Sequence Viewer
	XP_008760294	(Get FASTA)	NCBI Sequence Viewer
	XP_063140716	(Get FASTA)	NCBI Sequence Viewer
	XP_063140717	(Get FASTA)	NCBI Sequence Viewer
	XP_063140718	(Get FASTA)	NCBI Sequence Viewer
	XP_063140719	(Get FASTA)	NCBI Sequence Viewer
	XP_063140720	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC35249	(Get FASTA)	NCBI Sequence Viewer
	AAI00069	(Get FASTA)	NCBI Sequence Viewer
	EDL79690	(Get FASTA)	NCBI Sequence Viewer
	EDL79691	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000015775.2
	ENSRNOP00000073200.1
	ENSRNOP00000085704.1
GenBank Protein	O88850	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_113975 ⟸ NM_031787
- Peptide Label:	isoform 1
- UniProtKB:	O88850 (UniProtKB/Swiss-Prot), F7EY07 (UniProtKB/TrEMBL), A6HNU0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASQVLVYPPYVYQTQSSAFCSVKKLKVEPSGCVFQERACPQIHVNGRHFGNPLPSTKGSAFQT KIPFSKPRGHSFSLQAGAIVVKDTAGATKVIAAQAQQAGVEAPRAVVWRNRLHFLGGPQRCGLK RKSEELDNHSGAMQIVDELSILPAMLQTNMGNPVTVVTATTGSKQNCTSGEGDYQLVQHEVLCS VKNTYEVLDFLGRGTFGQVVKCWKRGTNEIVAIKILKNHPSYARQGQIEVSILARLSTENADEY NFVRAYECFQHRNHTCLVFEMLEQNLYDFLKQNKFSPLPLKVIRPVLQQVATALKKLKSLGLIH ADLKPENIMLVDPVRQPYRVKVIDFGSASHVSKTVCSTYLQSRYYRAPEIILGLPFCEAIDMWS LGCVIAELFLGWPLYPGALEYDQIRYISQTQGLPGEQLLNVGTKSTRFFCRETDMSHSGWRLKT LEEHEAETGMKSKEARKYIFNSLDDIVHVNTVMDLEGSDLLAEKADRREFVSLLKKMLLIDADL RITPIETLNHPFVSMKHLLDFPHSSHVKSCFHIMDICKSPSSCETNNHSKMSLLRPVASNGTAA LAANFTKVGTLRSQALTTSAHSVVHHGIPLQAGTAQFGCGDAFHQTLIICPPAIQGIPAAHGKP TSYSIRVDNTVPLVTQAPAVQPLQIRPGVLSQTWSGRTQQMLIPAWQQVTPMAPAAATLTSEGM AGSQRLGDWGKMIPHSNHYNSVMPPPLLTNQITLSAPQPISVGIAHVVWPQPATTKKNKLCQNR SNSLQNTNVPHSAFISPKIISGKEVEEVSCVETQDNHTSEGEARTCHEASVRQDSSVSDKQRQT IIIADSPSPAVSVITISSDTDDEETSPRPSLRECKGSLDCEACQSTLNIDRMCSLSSPDSTLST SSSGQSSPSPCKRPNSMSDDEQESGCETVDGSPTSDSSGHDSPFAESSFVEDTPQNPELGTCAG TEAKPALSTAVEPPVGTERGLNVDAHMANTDSTCQPLTKGQPAPGKLNQPSASAARQQKPTSAF QQQHLNLSQVQHFGTGHQEWNGNFGHRRQQAYIPTSVTSNPFTLSHGSPNHTAVHAHLAGSAHL GGQPTLLPYPPSTALSSAAPVAHLLASPCTSRPMLQHPTYNISHPSGIVHQVPVGINPRLLPSP TIHQTQYKPIFPPHSYIAASPAYTGFPLSPTKLSQYPYM hide sequence

RefSeq Acc Id:	XP_008760294 ⟸ XM_008762072
- Peptide Label:	isoform X6
- UniProtKB:	A0A0G2K4W6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASQVLVYPPYVYQTQSSAFCSVKKLKVEPSGCVFQERACPQIHVNGRHFGNPLPSTKGSAFQT KIPFSKPRGHSFSLQAGAIVVKDTAGATKVIAAQAQQAGVEAPRAVVWRNRLHFLGGPQRCGLK RKSEELDNHSGAMQIVDELSILPAMLQTNMGNPVTVVTATTGSKQNCTSGEGDYQLVQHEVLCS VKNTYEVLDFLGRGTFGQVVKCWKRGTNEIVAIKILKNHPSYARQGQIEVSILARLSTENADEY NFVRAYECFQHRNHTCLVFEMLEQNLYDFLKQNKFSPLPLKVIRPVLQQVATALKKLKSLGLIH ADLKPENIMLVDPVRQPYRVKVIDFGSASHVSKTVCSTYLQSRYYRAPEIILGLPFCEAIDMWS LGCVIAELFLGWPLYPGALEYDQIRYISQTQGLPGEQLLNVGTKSTRFFCRETDMSHSGWRLKT LEEHEAETGMKSKEARKYIFNSLDDIVHVNTVMDLEGSDLLAEKADRREFVSLLKKMLLIDADL RITPIETLNHPFVSMKHLLDFPHSSHVKSCFHIMDICKSPSSCETNNHSKMSLLRPVASNGTAA LAANFTKVGTLRSQALTTSAHSVVHHGIPLQAGTAQFGCGDAFHQTLIICPPAIQGIPAAHGKP TSYSIRVDNTVPLVTQAPAVQPLQIRPGVLSQTWSGRTQQMLIPAWQQVTPMAPAAATLTSEGM AGSQRLGDWGKMIPHSNHYNSVMPPPLLTNQITLSAPQPISVGIAHVVWPQPATTKKNKLCQNR GILVKLMEWEPGREEINAFRWSNSLQNTNVPHSAFISPKIISGKEVEEVSCVETQDNHTSEGEA RTCHEASVRQDSSVSDKQRQTIIIADSPSPAVSVITISSDTDDEETSPRPSLRECKGSLDCEAC QSTLNIDRMCSLSSPDSTLSTSSSGQSSPSPCKRPNSMSDDEQESGCETVDGSPTSDSSGHDSP FAESSFVEDTPQNPELGTCAGTEAKPALSTAVEPPVGTERGLNVDAHMANTDSTCQPLTKGQPA PGKLNQPSASAARQQKPTSAFQQQHLNLSQVQHFGTGHQEWNGNLGHRRQQAYIPTSVTSNPFT LSHGSPNHTAVHAHLAGSAHLGGQPTLLPYPPSTALSSAAPVAHLLASPCTSRPMLQHPTYNIS HPSGIVHQVPVGINPRLLPSPTIHQTQYKPIFPPHSYIAASPAYTGFPLSPTKLSQYPYM hide sequence

Ensembl Acc Id:

ENSRNOP00000073200 ⟸ ENSRNOT00000089554

Ensembl Acc Id:

ENSRNOP00000015775 ⟸ ENSRNOT00000015775

Ensembl Acc Id:

ENSRNOP00000085704 ⟸ ENSRNOT00000105868

RefSeq Acc Id:	NP_001382009 ⟸ NM_001395080
- Peptide Label:	isoform 2
- UniProtKB:	O88850 (UniProtKB/Swiss-Prot), Q498U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140717 ⟸ XM_063284647
- Peptide Label:	isoform X2
- UniProtKB:	O88850 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063140716 ⟸ XM_063284646
- Peptide Label:	isoform X1
- UniProtKB:	O88850 (UniProtKB/Swiss-Prot), A0A8I6GE65 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140720 ⟸ XM_063284650
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063140719 ⟸ XM_063284649
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063140718 ⟸ XM_063284648
- Peptide Label:	isoform X3

Protein Domains

Protein kinase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O88850-F1-model_v2	AlphaFold	O88850	1-1191	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692265

Promoter ID:

EPDNEW_R2785

Type:

single initiation site

Name:

Hipk3_1

Description:

homeodomain interacting protein kinase 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	94,418,706 - 94,418,766	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:619884	AgrOrtholog
BioCyc Gene	G2FUF-48536	BioCyc
Ensembl Genes	ENSRNOG00000011358	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015775.4	UniProtKB/TrEMBL
	ENSRNOT00000089554.2	UniProtKB/TrEMBL
	ENSRNOT00000105868.1	UniProtKB/TrEMBL
Gene3D-CATH	Phosphorylase Kinase, domain 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Transferase(Phosphotransferase) domain 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7111326	IMAGE-MGC_LOAD
InterPro	Kinase-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Prot_kinase_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Protein_kinase_ATP_BS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ser/Thr_kinase_AS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ser_Thr_dual-spec_kinase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:83617	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:112610	IMAGE-MGC_LOAD
NCBI Gene	83617	ENTREZGENE
PANTHER	DUAL SPECIFICITY PROTEIN KINASE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	HOMEODOMAIN-INTERACTING PROTEIN KINASE 3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Pkinase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Hipk3	PhenoGen
PROSITE	PROTEIN_KINASE_ATP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROTEIN_KINASE_DOM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROTEIN_KINASE_ST	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000011358	RatGTEx
SMART	S_TKc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF56112	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K4W6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GE65	ENTREZGENE, UniProtKB/TrEMBL
	A6HNU0	ENTREZGENE, UniProtKB/TrEMBL
	F7EY07	ENTREZGENE, UniProtKB/TrEMBL
	HIPK3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q498U5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Hipk3	homeodomain interacting protein kinase 3		homeodomain-interacting protein kinase 3	Name updated	1299863	APPROVED
2002-08-07	Hipk3	homeodomain-interacting protein kinase 3			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_homology	has similarity over the protein kinase region to minibrain, a protein kinase associated with Down syndrome	632993

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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