Cysltr2 (cysteinyl leukotriene receptor 2) - Rat Genome Database

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Gene: Cysltr2 (cysteinyl leukotriene receptor 2) Rattus norvegicus
Analyze
Symbol: Cysltr2
Name: cysteinyl leukotriene receptor 2
RGD ID: 619797
Description: Predicted to enable G protein-coupled peptide receptor activity and cysteinyl leukotriene receptor activity. Involved in positive regulation of ERK1 and ERK2 cascade; positive regulation of angiogenesis; and positive regulation of cell death. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in aspirin-induced respiratory disease and asthma. Orthologous to human CYSLTR2 (cysteinyl leukotriene receptor 2); PARTICIPATES IN endothelin signaling pathway; calcium/calcium-mediated signaling pathway; INTERACTS WITH ammonium chloride; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Cyslt2; cysteinyl leukotriene CysLT2 receptor; RSBPT32
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21548,190,251 - 48,229,906 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1548,189,073 - 48,304,136 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1552,335,467 - 52,371,705 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01553,447,041 - 53,483,279 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01550,280,153 - 50,323,717 (-)NCBIRnor_WKY
Rnor_6.01554,903,290 - 54,941,742 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1554,905,274 - 54,906,203 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01558,626,639 - 58,627,568 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41553,647,500 - 53,648,429 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11553,663,279 - 53,664,209 (-)NCBI
Celera1547,842,400 - 47,878,749 (-)NCBICelera
Cytogenetic Map15p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Targeted gene disruption reveals the role of the cysteinyl leukotriene 2 receptor in increased vascular permeability and in bleomycin-induced pulmonary fibrosis in mice. Beller TC, etal., J Biol Chem. 2004 Oct 29;279(44):46129-34. Epub 2004 Aug 24.
2. Association between a polymorphism in cysteinyl leukotriene receptor 2 on chromosome 13q14 and atopic asthma. Fukai H, etal., Pharmacogenetics. 2004 Oct;14(10):683-90.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Activation of CysLT receptors induces astrocyte proliferation and death after oxygen-glucose deprivation. Huang XJ, etal., Glia. 2008 Jan 1;56(1):27-37.
5. Cysteinyl leukotriene receptors are expressed by tonsillar T cells of children with obstructive sleep apnea. Kaditis AG, etal., Chest. 2008 Aug;134(2):324-31. Epub 2008 May 19.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. Association analysis of cysteinyl-leukotriene receptor 2 (CYSLTR2) polymorphisms with aspirin intolerance in asthmatics. Park JS, etal., Pharmacogenet Genomics. 2005 Jul;15(7):483-92.
10. Expression of eicosanoid receptors subtypes and eosinophilic inflammation: implication on chronic rhinosinusitis. Perez-Novo CA, etal., Respir Res. 2006 May 12;7:75.
11. A coding polymorphism in the CYSLT2 receptor with reduced affinity to LTD4 is associated with asthma. Pillai SG, etal., Pharmacogenetics. 2004 Sep;14(9):627-33.
12. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
13. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
14. CysLT2 receptor-mediated AQP4 up-regulation is involved in ischemic-like injury through activation of ERK and p38 MAPK in rat astrocytes. Qi LL, etal., Life Sci. 2011 Jan 3;88(1-2):50-6. Epub 2010 Nov 3.
15. GOA pipeline RGD automated data pipeline
16. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
17. Comprehensive gene review and curation RGD comprehensive gene curation
18. Involvement of leukotrienes in the pathogenesis of silica-induced pulmonary fibrosis in mice. Shimbori C, etal., Exp Lung Res. 2010 Jun;36(5):292-301.
19. Involvement of cysteinyl leukotriene receptors in angiogenesis in rat thoracic aortic rings. Xu L, etal., Pharmazie. 2010 Oct;65(10):750-4.
20. Expression of cysteinyl leukotriene receptor in brain tissues of rats with Streptococcus pneumoniae meningitis. Yu S, etal., Int J Clin Exp Pathol. 2019 Dec 1;12(12):4242-4252. eCollection 2019.
21. Cysteinyl leukotriene receptor 2 is spatiotemporally involved in neuron injury, astrocytosis and microgliosis after focal cerebral ischemia in rats. Zhao CZ, etal., Neuroscience. 2011 Jun 12.
Additional References at PubMed
PMID:11591709   PMID:11854273  


Genomics

Comparative Map Data
Cysltr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21548,190,251 - 48,229,906 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1548,189,073 - 48,304,136 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1552,335,467 - 52,371,705 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01553,447,041 - 53,483,279 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01550,280,153 - 50,323,717 (-)NCBIRnor_WKY
Rnor_6.01554,903,290 - 54,941,742 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1554,905,274 - 54,906,203 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01558,626,639 - 58,627,568 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41553,647,500 - 53,648,429 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11553,663,279 - 53,664,209 (-)NCBI
Celera1547,842,400 - 47,878,749 (-)NCBICelera
Cytogenetic Map15p11NCBI
CYSLTR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381348,653,929 - 48,711,226 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1348,653,711 - 48,711,226 (+)EnsemblGRCh38hg38GRCh38
GRCh371349,228,065 - 49,285,362 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361348,178,952 - 48,181,499 (+)NCBINCBI36Build 36hg18NCBI36
Build 341348,178,951 - 48,181,499NCBI
Celera1330,335,737 - 30,338,284 (+)NCBICelera
Cytogenetic Map13q14.2NCBI
HuRef1330,074,309 - 30,076,858 (+)NCBIHuRef
CHM1_11349,248,517 - 49,251,064 (+)NCBICHM1_1
T2T-CHM13v2.01347,874,204 - 47,931,486 (+)NCBIT2T-CHM13v2.0
Cysltr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391473,263,515 - 73,286,554 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1473,263,043 - 73,286,554 (-)EnsemblGRCm39 Ensembl
GRCm381473,025,672 - 73,049,114 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1473,025,603 - 73,049,114 (-)EnsemblGRCm38mm10GRCm38
MGSCv371473,428,935 - 73,448,921 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361471,764,210 - 71,784,144 (-)NCBIMGSCv36mm8
Celera1470,545,510 - 70,565,476 (-)NCBICelera
Cytogenetic Map14D3NCBI
Cysltr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554312,263,698 - 2,282,635 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554312,203,342 - 2,282,635 (+)NCBIChiLan1.0ChiLan1.0
CYSLTR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11348,497,679 - 48,556,159 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1348,551,757 - 48,552,797 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01329,796,598 - 29,853,676 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CYSLTR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1222,914,960 - 2,962,517 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl222,917,514 - 2,918,551 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha222,942,924 - 2,990,494 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0222,903,750 - 2,951,364 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl222,906,323 - 2,907,360 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1222,813,420 - 2,861,018 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0222,859,844 - 2,924,179 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0222,881,301 - 2,928,917 (-)NCBIUU_Cfam_GSD_1.0
Cysltr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945158,401,599 - 158,442,112 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365651,917,970 - 1,919,027 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYSLTR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1118,987,174 - 19,011,015 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11118,988,665 - 19,011,015 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21119,465,520 - 19,487,725 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYSLTR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1326,578,248 - 26,624,364 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605717,279,511 - 17,460,410 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cysltr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247486,040,564 - 6,043,454 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
7411725Strs7Sensitivity to stroke QTL 73.8cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)154028990149308583Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:146
Count of miRNA genes:124
Interacting mature miRNAs:136
Transcripts:ENSRNOT00000020186
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 7 4
Low 3 14 3 1 12 1 18 5 3 7
Below cutoff 18 33 25 25 3 3 36 24 29 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000020186   ⟹   ENSRNOP00000020187
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1554,905,274 - 54,906,203 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101826   ⟹   ENSRNOP00000095936
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1548,190,320 - 48,278,229 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000102995   ⟹   ENSRNOP00000083658
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1548,189,073 - 48,197,531 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000105845   ⟹   ENSRNOP00000091083
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1548,189,073 - 48,304,136 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112031   ⟹   ENSRNOP00000083081
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1548,190,245 - 48,227,991 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115019   ⟹   ENSRNOP00000087467
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1548,190,245 - 48,304,136 (-)Ensembl
RefSeq Acc Id: NM_133413   ⟹   NP_596904
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21548,192,339 - 48,193,268 (-)NCBI
Rnor_6.01554,905,274 - 54,906,203 (-)NCBI
Rnor_5.01558,626,639 - 58,627,568 (-)NCBI
RGSC_v3.41553,647,500 - 53,648,429 (-)RGD
Sequence:
RefSeq Acc Id: NR_131894
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21548,191,286 - 48,228,734 (-)NCBI
Rnor_6.01554,904,221 - 54,940,071 (-)NCBI
Celera1547,842,400 - 47,878,749 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008770843   ⟹   XP_008769065
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21548,190,251 - 48,229,906 (-)NCBI
Rnor_6.01554,903,290 - 54,941,742 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_596904 (Get FASTA)   NCBI Sequence Viewer  
  XP_008769065 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB60816 (Get FASTA)   NCBI Sequence Viewer  
  CAJ58196 (Get FASTA)   NCBI Sequence Viewer  
  Q924T9 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_596904   ⟸   NM_133413
- UniProtKB: Q924T9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008769065   ⟸   XM_008770843
- Peptide Label: isoform X1
- UniProtKB: Q924T9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000020187   ⟸   ENSRNOT00000020186
RefSeq Acc Id: ENSRNOP00000095936   ⟸   ENSRNOT00000101826
RefSeq Acc Id: ENSRNOP00000091083   ⟸   ENSRNOT00000105845
RefSeq Acc Id: ENSRNOP00000087467   ⟸   ENSRNOT00000115019
RefSeq Acc Id: ENSRNOP00000083081   ⟸   ENSRNOT00000112031
RefSeq Acc Id: ENSRNOP00000083658   ⟸   ENSRNOT00000102995

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q924T9-F1-model_v2 AlphaFold Q924T9 1-309 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619797 AgrOrtholog
BioCyc Gene G2FUF-13172 BioCyc
Ensembl Genes ENSRNOG00000015042 Ensembl
  ENSRNOG00000067464 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000083081 UniProtKB/Swiss-Prot
  ENSRNOP00000083658 UniProtKB/Swiss-Prot
  ENSRNOP00000087467 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000091083 UniProtKB/Swiss-Prot
  ENSRNOP00000095936 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000101826 UniProtKB/Swiss-Prot
  ENSRNOT00000102995 UniProtKB/Swiss-Prot
  ENSRNOT00000105845 UniProtKB/Swiss-Prot
  ENSRNOT00000112031 UniProtKB/Swiss-Prot
  ENSRNOT00000115019 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro CLT2_recept UniProtKB/Swiss-Prot
  Cyst_leuk_rcpt UniProtKB/Swiss-Prot
  GPCR_Rhodpsn UniProtKB/Swiss-Prot
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
KEGG Report rno:170926 UniProtKB/Swiss-Prot
NCBI Gene 170926 ENTREZGENE
Pfam 7tm_1 UniProtKB/Swiss-Prot
PhenoGen Cysltr2 PhenoGen
PRINTS CYSLT2RECPTR UniProtKB/Swiss-Prot
  CYSLTRECPTR UniProtKB/Swiss-Prot
  GPCRRHODOPSN UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
UniProt CLTR2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Cysltr2  cysteinyl leukotriene receptor 2  Cyslt2  cysteinyl leukotriene CysLT2 receptor  Symbol and Name updated 1299863 APPROVED
2002-08-07 Cyslt2  cysteinyl leukotriene CysLT2 receptor      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_function mouse homolog is a putative cysteinyl leukotriene receptor 704405