ELMO1-AS1 (ELMO1 antisense RNA 1) - Rat Genome Database

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Gene: ELMO1-AS1 (ELMO1 antisense RNA 1) Homo sapiens
Analyze
Symbol: ELMO1-AS1
Name: ELMO1 antisense RNA 1
RGD ID: 5686924
HGNC Page HGNC:40765
Description: INTERACTS WITH acetochlor; herbicide
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: AC009196.1
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38736,997,796 - 37,013,630 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl736,997,796 - 37,013,630 (+)EnsemblGRCh38hg38GRCh38
GRCh37737,037,401 - 37,053,235 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7p14.2NCBI
HuRef736,916,910 - 36,932,761 (+)NCBIHuRef
CHM1_1737,036,964 - 37,052,810 (+)NCBICHM1_1
T2T-CHM13v2.0737,138,126 - 37,153,962 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
acetochlor  (EXP)
herbicide  (EXP)

References
Additional References at PubMed
PMID:16344560  


Genomics

Variants

.
Variants in ELMO1-AS1
1 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1 copy number loss See cases [RCV000135401] Chr7:54185..159282390 [GRCh38]
Chr7:54185..159075079 [GRCh37]
Chr7:149268..158767840 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7p14.2-14.1(chr7:35460776-42013800)x1 copy number loss See cases [RCV000138190] Chr7:35460776..42013800 [GRCh38]
Chr7:35500386..42053399 [GRCh37]
Chr7:35466911..42019924 [NCBI36]
Chr7:7p14.2-14.1		 pathogenic
GRCh38/hg38 7p14.3-14.1(chr7:32678391-41044983)x1 copy number loss See cases [RCV000140283] Chr7:32678391..41044983 [GRCh38]
Chr7:32718003..41084581 [GRCh37]
Chr7:32684528..41051106 [NCBI36]
Chr7:7p14.3-14.1		 pathogenic
GRCh38/hg38 7p22.3-14.1(chr7:54185-41875885)x3 copy number gain See cases [RCV000051159] Chr7:54185..41875885 [GRCh38]
Chr7:54185..41915483 [GRCh37]
Chr7:149268..41882008 [NCBI36]
Chr7:7p22.3-14.1		 pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1 copy number loss See cases [RCV000052250] Chr7:53985..159282531 [GRCh38]
Chr7:53985..159075220 [GRCh37]
Chr7:149068..158767981 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7p22.3-14.2(chr7:54185-37089712)x3 copy number gain See cases [RCV000053530] Chr7:54185..37089712 [GRCh38]
Chr7:54185..37129317 [GRCh37]
Chr7:149268..37095842 [NCBI36]
Chr7:7p22.3-14.2		 pathogenic
GRCh38/hg38 7p14.3-q11.21(chr7:33328312-62377476)x3 copy number gain See cases [RCV000053532] Chr7:33328312..62377476 [GRCh38]
Chr7:33367924..61831899 [GRCh37]
Chr7:33334449..61469334 [NCBI36]
Chr7:7p14.3-q11.21		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:145
Count of miRNA genes:141
Interacting mature miRNAs:144
Transcripts:ENST00000419535
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 1 8 9 95 11 3 15 14 11 1 4 10 1
Below cutoff 257 362 351 71 435 57 493 162 759 47 177 417 14 190 323 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000419535
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl736,997,796 - 37,013,630 (+)Ensembl
RefSeq Acc Id: NR_104120
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38736,997,796 - 37,013,630 (+)NCBI
HuRef736,916,910 - 36,932,761 (+)NCBI
CHM1_1737,036,964 - 37,052,810 (+)NCBI
T2T-CHM13v2.0737,138,126 - 37,153,962 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC ELMO1-AS1 COSMIC
Ensembl Genes ENSG00000224101 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000419535 ENTREZGENE
GTEx ENSG00000224101 GTEx
HGNC ID HGNC:40765 ENTREZGENE
Human Proteome Map ELMO1-AS1 Human Proteome Map
NCBI Gene ELMO1-AS1 ENTREZGENE
RNAcentral URS00004DC63E RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-21 ELMO1-AS1  ELMO1 antisense RNA 1  ELMO1-AS1  ELMO1 antisense RNA 1 (non-protein coding)  Symbol and/or name change 5135510 APPROVED