Gm20594 (predicted gene, 20594) - Rat Genome Database
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Gene: Gm20594 (predicted gene, 20594) Mus musculus
Analyze
Symbol: Gm20594
Name: predicted gene, 20594
RGD ID: 5683775
MGI Page MGI
Description: Orthologous to human MTRNR2L7 (MT-RNR2 like 7).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Mtrnr2-like; Mtrnr2l
RGD Orthologs
Human
Bonobo
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39679,795,014 - 79,795,347 (+)NCBIGRCm39mm39
GRCm39 Ensembl679,794,899 - 79,795,347 (+)Ensembl
GRCm38679,818,031 - 79,818,364 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl679,817,916 - 79,818,364 (+)EnsemblGRCm38mm10GRCm38
MGSCv37679,768,025 - 79,768,358 (+)NCBIGRCm37mm9NCBIm37
Celera681,827,337 - 81,827,670 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19477263   PMID:21873635  


Genomics

Comparative Map Data
Gm20594
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39679,795,014 - 79,795,347 (+)NCBIGRCm39mm39
GRCm39 Ensembl679,794,899 - 79,795,347 (+)Ensembl
GRCm38679,818,031 - 79,818,364 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl679,817,916 - 79,818,364 (+)EnsemblGRCm38mm10GRCm38
MGSCv37679,768,025 - 79,768,358 (+)NCBIGRCm37mm9NCBIm37
Celera681,827,337 - 81,827,670 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.01NCBI
MTRNR2L7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1037,601,440 - 37,602,974 (-)EnsemblGRCh38hg38GRCh38
GRCh381037,601,438 - 37,602,931 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371037,890,366 - 37,891,859 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1037,661,179 - 37,662,672 (-)NCBI
Cytogenetic Map10p11.21NCBI
HuRef1037,597,965 - 37,599,458 (-)NCBIHuRef
CHM1_11037,890,849 - 37,892,342 (-)NCBICHM1_1
MTRNR2L7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11038,206,791 - 38,208,255 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1038,207,300 - 38,207,374 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01037,658,442 - 37,659,906 (-)NCBIMhudiblu_PPA_v0panPan3


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:57
Count of miRNA genes:55
Interacting mature miRNAs:56
Transcripts:ENSMUST00000179797
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001190732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC157100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000179797   ⟹   ENSMUSP00000136098
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl679,817,916 - 79,818,364 (+)Ensembl
RefSeq Acc Id: NM_001190732   ⟹   NP_001177661
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39679,795,014 - 79,795,347 (+)NCBI
GRCm38679,818,031 - 79,818,364 (+)ENTREZGENE
MGSCv37679,768,025 - 79,768,358 (+)ENTREZGENE
Celera681,827,337 - 81,827,670 (+)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001177661 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001177661   ⟸   NM_001190732
- UniProtKB: J3QJY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000136098   ⟸   ENSMUST00000179797

Promoters
RGD ID:6890078
Promoter ID:EPDNEW_M8489
Type:initiation region
Name:Gm20594_1
Description:Mus musculus predicted gene, 20594 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38679,818,104 - 79,818,164EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:5295700 AgrOrtholog
Ensembl Genes ENSMUSG00000096887 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000136098 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000179797 ENTREZGENE, UniProtKB/TrEMBL
InterPro Humanin UniProtKB/TrEMBL
KEGG Report mmu:100463512 UniProtKB/TrEMBL
MGD MGI:5295700 ENTREZGENE
NCBI Gene Gm20594 ENTREZGENE
PANTHER PTHR33895 UniProtKB/TrEMBL
Pfam Humanin UniProtKB/TrEMBL
PhenoGen Gm20594 PhenoGen
UniProt J3QJY3 ENTREZGENE, UniProtKB/TrEMBL