IGBP1P3 (IGBP1 pseudogene 3) - Rat Genome Database

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Gene: IGBP1P3 (IGBP1 pseudogene 3) Homo sapiens
Analyze
Symbol: IGBP1P3
Name: IGBP1 pseudogene 3
RGD ID: 5683696
HGNC Page HGNC:43612
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: immunoglobulin (CD79A) binding protein 1 pseudogene 3
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38332,620,700 - 32,621,914 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl332,620,903 - 32,621,902 (-)EnsemblGRCh38hg38GRCh38
GRCh37332,662,192 - 32,663,406 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36332,637,393 - 32,638,396 (-)NCBINCBI36Build 36hg18NCBI36
Celera332,599,484 - 32,600,484 (-)NCBICelera
Cytogenetic Map3p22.3NCBI
HuRef332,597,720 - 32,598,720 (-)NCBIHuRef
CHM1_1332,612,319 - 32,613,319 (-)NCBICHM1_1
T2T-CHM13v2.0332,617,643 - 32,618,857 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:268
Count of miRNA genes:250
Interacting mature miRNAs:262
Transcripts:ENST00000447449
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 19 12 8 12 2 13 24 16 10
Below cutoff 286 673 342 51 202 30 1227 356 897 70 466 372 21 217 823

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000447449
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl332,620,903 - 32,621,902 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC IGBP1P3 COSMIC
Ensembl Genes ENSG00000231552 Ensembl, ENTREZGENE
GTEx ENSG00000231552 GTEx
HGNC ID HGNC:43612 ENTREZGENE
Human Proteome Map IGBP1P3 Human Proteome Map
NCBI Gene IGBP1P3 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-03 IGBP1P3  IGBP1 pseudogene 3  IGBP1P3  immunoglobulin (CD79A) binding protein 1 pseudogene 3  Symbol and/or name change 19259463 PROVISIONAL