CBX3P9 (CBX3 pseudogene 9) - Rat Genome Database

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Gene: CBX3P9 (CBX3 pseudogene 9) Homo sapiens
Analyze
Symbol: CBX3P9
Name: CBX3 pseudogene 9
RGD ID: 5490504
HGNC Page HGNC:42881
Description: INTERACTS WITH perfluorooctane-1-sulfonic acid
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: chromobox 3 pseudogene 9
Related Functional Gene: CBX3  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386116,452,817 - 116,453,655 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6116,453,014 - 116,453,565 (-)EnsemblGRCh38hg38GRCh38
GRCh376116,773,980 - 116,774,818 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366116,880,521 - 116,881,515 (-)NCBINCBI36Build 36hg18NCBI36
Celera6117,517,247 - 117,517,795 (-)NCBICelera
Cytogenetic Map6q22.1NCBI
HuRef6114,354,052 - 114,354,600 (-)NCBIHuRef
CHM1_16117,037,829 - 117,038,377 (-)NCBICHM1_1
T2T-CHM13v2.06117,636,538 - 117,637,376 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:38
Interacting mature miRNAs:39
Transcripts:ENST00000402326
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 9 13 13 11 219 11 14 24 14 40 19
Low 484 556 418 119 515 95 1264 346 607 205 563 742 32 427 741 2
Below cutoff 1491 1810 954 322 807 207 2496 1475 2340 105 650 692 119 688 1680 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000402326
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6116,453,014 - 116,453,565 (-)Ensembl
RefSeq Acc Id: XR_016921
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 366116,880,521 - 116,881,515 (-)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC CBX3P9 COSMIC
Ensembl Genes ENSG00000217241 Ensembl
GTEx ENSG00000217241 GTEx
HGNC ID HGNC:42881 ENTREZGENE
Human Proteome Map CBX3P9 Human Proteome Map
NCBI Gene 644101 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-10-31 CBX3P9  CBX3 pseudogene 9  CBX3P9  chromobox 3 pseudogene 9  Symbol and/or name change 19259463 PROVISIONAL
2015-12-01 CBX3P9  chromobox 3 pseudogene 9    chromobox homolog 3 pseudogene 9  Symbol and/or name change 5135510 APPROVED