Gm14567 (predicted gene 14567) - Rat Genome Database

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Gene: Gm14567 (predicted gene 14567) Mus musculus
Analyze
No known orthologs.
Symbol: Gm14567
Name: predicted gene 14567
RGD ID: 5147316
MGI Page MGI
Description: Orthologous to human POLR2K (RNA polymerase II, I and III subunit K). [provided by Alliance of Genome Resources, Apr 2022]
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: DNA-directed RNA polymerases I, II, and III subunit RPABC4-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Polr2k  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X38,058,664 - 38,059,104 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX38,058,694 - 38,058,867 (+)EnsemblGRCm39 Ensembl
GRCm38X38,969,787 - 38,970,227 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX38,969,817 - 38,969,990 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X36,322,971 - 36,323,339 (+)NCBIGRCm37MGSCv37mm9NCBIm37
CeleraX26,616,309 - 26,616,677 (+)NCBICelera
Cytogenetic MapXA3.3NCBI
cM MapX23.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Gm14567
12 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:87
Interacting mature miRNAs:88
Transcripts:ENSMUST00000117155, ENSMUST00000181435
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1301551Spha1_msperm head anomaly 1 (mouse)Not determinedX1026622539921652Mouse
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
1558721Bw1_mbody weight QTL 1 (mouse)Not determinedX2060678347179225Mouse
12738418Lfibq12_mliver fibrosis QTL 12 (mouse)X2572817443635700Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3333746355845360Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3466365356845360Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse

Markers in Region
Polr2k  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X38,969,808 - 38,970,207UniSTSGRCm38
MGSCv37X36,322,985 - 36,323,384UniSTSGRCm37
CeleraX26,616,323 - 26,616,722UniSTS
Cytogenetic Map15A2UniSTS
cM Map15 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000117155
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX38,058,694 - 38,058,867 (+)Ensembl
GRCm38.p6 EnsemblX38,969,817 - 38,969,990 (+)Ensembl
RefSeq Acc Id: XM_001476827
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
CeleraX26,616,309 - 26,616,677 (+)ENTREZGENE
RefSeq Acc Id: XM_003085254
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv37X36,322,971 - 36,323,339 (+)ENTREZGENE

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3705732 AgrOrtholog
Ensembl Genes ENSMUSG00000080896 Ensembl
MGD MGI:3705732 ENTREZGENE
NCBI Gene 100046796 ENTREZGENE
PhenoGen Gm14567 PhenoGen