Gm14776 (predicted gene 14776) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gm14776 (predicted gene 14776) Mus musculus
Analyze
Symbol: Gm14776
Name: predicted gene 14776
RGD ID: 5147225
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: Npm1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X86,814,926 - 86,815,988 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX86,814,945 - 86,815,958 (-)EnsemblGRCm39 Ensembl
GRCm38X87,771,320 - 87,772,382 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX87,771,339 - 87,772,352 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X85,016,801 - 85,017,625 (-)NCBIGRCm37MGSCv37mm9NCBIm37
CeleraX55,437,742 - 55,438,473 (-)NCBICelera
Cytogenetic MapXC1NCBI
cM MapX39.95NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm14776
30 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:134
Count of miRNA genes:132
Interacting mature miRNAs:134
Transcripts:ENSMUST00000121029
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302054Gct4_mgranulosa cell tumorigenesis 4 (mouse)Not determinedX76124336102062720Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
10412108Desp5_mdespair 5 (mouse)Not determinedX5472235188722351Mouse
12879918Shm4_msperm head morphology 4 (mouse)X72072050102062720Mouse
13464140Hdlq108_mHDL QTL 108 (mouse)X5777196091771960Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5198887789743606Mouse
25314316Mlh1fc3_mMLH1 foci count 3 (mouse)X6134360689843606Mouse
25314318Sccor2_msynaptonemal complex length to mean MLH1 count ratio 2 (mouse)X7054360696543606Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_017899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BX088567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000121029
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX86,814,945 - 86,815,958 (-)Ensembl
GRCm38.p6 EnsemblX87,771,339 - 87,772,352 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000083421 Ensembl, ENTREZGENE
MGD MGI:3705559 ENTREZGENE
NCBI Gene 100416068 ENTREZGENE
PhenoGen Gm14776 PhenoGen