Gm14840 (predicted gene 14840) - Rat Genome Database

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Gene: Gm14840 (predicted gene 14840) Mus musculus
Analyze
Symbol: Gm14840
Name: predicted gene 14840
RGD ID: 5147098
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: Hmgb1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X101,701,150 - 101,701,942 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX101,701,347 - 101,701,940 (-)EnsemblGRCm39 Ensembl
GRCm38X102,657,544 - 102,658,336 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX102,657,741 - 102,658,334 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X99,853,083 - 99,853,673 (-)NCBIGRCm37MGSCv37mm9NCBIm37
CeleraX89,568,661 - 89,569,251 (-)NCBICelera
Cytogenetic MapXDNCBI
cM MapX45.61NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm14840
11 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:81
Count of miRNA genes:78
Interacting mature miRNAs:79
Transcripts:ENSMUST00000122135
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
12879918Shm4_msperm head morphology 4 (mouse)X72072050102062720Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
1302054Gct4_mgranulosa cell tumorigenesis 4 (mouse)Not determinedX76124336102062720Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_017931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL732405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000122135
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX101,701,347 - 101,701,940 (-)Ensembl
GRCm38.p6 EnsemblX102,657,741 - 102,658,334 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000083414 Ensembl
MGD MGI:3801922 ENTREZGENE
NCBI Gene 100416873 ENTREZGENE
PhenoGen Gm14840 PhenoGen