Gm15586 (predicted gene 15586) - Rat Genome Database

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Gene: Gm15586 (predicted gene 15586) Mus musculus
Analyze
Symbol: Gm15586
Name: predicted gene 15586
RGD ID: 5147088
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: Scnm1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39914,647,730 - 14,648,074 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl914,647,491 - 14,648,018 (+)EnsemblGRCm39 Ensembl
GRCm38914,736,434 - 14,736,778 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl914,736,195 - 14,736,722 (+)EnsemblGRCm38mm10GRCm38
MGSCv37914,540,639 - 14,541,168 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera912,016,671 - 12,017,200 (+)NCBICelera
Cytogenetic Map9A2NCBI
cM Map94.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm15586
12 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:158
Count of miRNA genes:153
Interacting mature miRNAs:158
Transcripts:ENSMUST00000121218
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142326Tgq19_mtriglyceride QTL 19 (mouse)Not determined121060750Mouse
1300899Chol6_mcholesterol 6 (mouse)Not determined9129902913Mouse
13434920Dcollq1_mdifferential colonization level QTL 1 (mouse)9130341840Mouse
35673312Ari7_mantibody response to influenza 7, day 45, IgG3 (mouse)9780000122211296Mouse
1300849Sles4_msystemic lupus erythmatosus suppressor 4 (mouse)Not determined9910756237306370Mouse
13504833Bglu19_mblood glucose level 19 (mouse)9991076843910768Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_020943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CT030247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000121218
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl914,647,491 - 14,648,018 (+)Ensembl
GRCm38.p6 Ensembl914,736,195 - 14,736,722 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000082564 Ensembl
MGD MGI:3783034 ENTREZGENE
NCBI Gene 100416944 ENTREZGENE
PhenoGen Gm15586 PhenoGen