Gm15186 (predicted gene 15186) - Rat Genome Database

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Gene: Gm15186 (predicted gene 15186) Mus musculus
Analyze
Symbol: Gm15186
Name: predicted gene 15186
RGD ID: 5147078
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: Tmem126a  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X158,371,318 - 158,372,066 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX158,371,461 - 158,372,023 (+)EnsemblGRCm39 Ensembl
GRCm38X159,588,322 - 159,589,070 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX159,588,465 - 159,589,027 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X156,026,254 - 156,026,995 (+)NCBIGRCm37MGSCv37mm9NCBIm37
CeleraX142,833,634 - 142,834,375 (+)NCBICelera
Cytogenetic MapXF4NCBI
cM MapX73.61NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm15186
17 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:39
Interacting mature miRNAs:40
Transcripts:ENSMUST00000119345
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX125685149159685269Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
10401118Pgia39_mproteoglycan induced arthritis 39 (mouse)Not determinedX144474380169476592Mouse
1302000Pgia25_mproteoglycan induced arthritis 2 (mouse)Not determinedX144474380169476592Mouse
12738421Lfibq17_mliver fibrosis QTL 17 (mouse)X148148453164945064Mouse

Markers in Region
RH128303  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X159,588,668 - 159,588,847UniSTSGRCm38
MGSCv37X156,026,600 - 156,026,779UniSTSGRCm37
CeleraX142,833,980 - 142,834,159UniSTS
Cytogenetic MapXF4UniSTS
Cytogenetic Map7E1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_018200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL672284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000119345
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX158,371,461 - 158,372,023 (+)Ensembl
GRCm38.p6 EnsemblX159,588,465 - 159,589,027 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000083906 Ensembl
MGD MGI:3705337 ENTREZGENE
NCBI Gene 100416958 ENTREZGENE
PhenoGen Gm15186 PhenoGen