Pou5f1-rs13 (POU domain, class 5, transcription factor 1, related sequence 13) - Rat Genome Database

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Gene: Pou5f1-rs13 (POU domain, class 5, transcription factor 1, related sequence 13) Mus musculus
Analyze
Symbol: Pou5f1-rs13
Name: POU domain, class 5, transcription factor 1, related sequence 13
RGD ID: 5146929
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: Gm15049
Related Functional Gene: Pou5f1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X141,558,483 - 141,559,386 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX141,558,881 - 141,559,343 (-)EnsemblGRCm39 Ensembl
GRCm38X142,775,487 - 142,776,390 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX142,775,885 - 142,776,347 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X139,210,030 - 139,210,933 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic MapXF2NCBI
cM MapX63.65NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Pou5f1-rs13
33 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:164
Count of miRNA genes:151
Interacting mature miRNAs:158
Transcripts:ENSMUST00000120474
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X121909697152582996Mouse
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX125685149159685269Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X128900749153782996Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
1301276Tswt_mtestis weight (mouse)Not determinedX138376411150789338Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_017977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL731674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000120474
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX141,558,881 - 141,559,343 (-)Ensembl
GRCm38.p6 EnsemblX142,775,885 - 142,776,347 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000081463 Ensembl
MGD MGI:3705647 ENTREZGENE
NCBI Gene 100417914 ENTREZGENE
PhenoGen Pou5f1-rs13 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-29 Pou5f1-rs13  POU domain, class 5, transcription factor 1, related sequence 13  Gm15049  predicted gene 15049  Symbol and/or name updated 27372883 PROVISIONAL