Gm15367 (predicted gene 15367) - Rat Genome Database

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Gene: Gm15367 (predicted gene 15367) Mus musculus
Analyze
Symbol: Gm15367
Name: predicted gene 15367
RGD ID: 5146926
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: Acbd5  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X74,054,195 - 74,055,214 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX74,054,196 - 74,055,211 (+)EnsemblGRCm39 Ensembl
GRCm38X75,010,589 - 75,011,608 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX75,010,590 - 75,011,605 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X72,255,708 - 72,256,947 (+)NCBIGRCm37MGSCv37mm9NCBIm37
CeleraX66,415,769 - 66,417,008 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX38.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm15367
23 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:136
Count of miRNA genes:128
Interacting mature miRNAs:133
Transcripts:ENSMUST00000122398
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX3992149886260137Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4147706075477203Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4170210675702218Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4602744480027567Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5198887789743606Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
10412108Desp5_mdespair 5 (mouse)Not determinedX5472235188722351Mouse
13464140Hdlq108_mHDL QTL 108 (mouse)X5777196091771960Mouse
25314316Mlh1fc3_mMLH1 foci count 3 (mouse)X6134360689843606Mouse
25314318Sccor2_msynaptonemal complex length to mean MLH1 count ratio 2 (mouse)X7054360696543606Mouse
1357730Hstx1_mhybrid sterility, X chromosome 1 (mouse)Not determinedX7145385277600812Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
12879918Shm4_msperm head morphology 4 (mouse)X72072050102062720Mouse

Markers in Region
UniSTS:234876  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X75,011,484 - 75,012,103UniSTSGRCm38
GRCm38415,486,651 - 15,486,956UniSTSGRCm38
MGSCv37415,413,798 - 15,414,103UniSTSGRCm37
MGSCv37X72,256,823 - 72,257,442UniSTSGRCm37
Celera415,285,191 - 15,285,496UniSTS
CeleraX66,416,884 - 66,417,503UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic MapXA7.3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_018080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL845304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000122398
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX74,054,196 - 74,055,211 (+)Ensembl
GRCm38.p6 EnsemblX75,010,590 - 75,011,605 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000082873 Ensembl, ENTREZGENE
MGD MGI:3705658 ENTREZGENE
NCBI Gene 100417917 ENTREZGENE
PhenoGen Gm15367 PhenoGen