Gm14828 (predicted gene 14828) - Rat Genome Database

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Gene: Gm14828 (predicted gene 14828) Mus musculus
Analyze
Symbol: Gm14828
Name: predicted gene 14828
RGD ID: 5146918
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: Entr1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X99,381,050 - 99,382,471 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX99,381,120 - 99,382,274 (+)EnsemblGRCm39 Ensembl
GRCm38X100,337,444 - 100,338,865 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX100,337,514 - 100,338,668 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X97,532,853 - 97,534,004 (+)NCBIGRCm37MGSCv37mm9NCBIm37
CeleraX87,263,527 - 87,264,678 (+)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX43.69NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm14828
45 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:127
Count of miRNA genes:123
Interacting mature miRNAs:125
Transcripts:ENSMUST00000119381
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
12879918Shm4_msperm head morphology 4 (mouse)X72072050102062720Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
1302054Gct4_mgranulosa cell tumorigenesis 4 (mouse)Not determinedX76124336102062720Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_018110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL671979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000119381
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX99,381,120 - 99,382,274 (+)Ensembl
GRCm38.p6 EnsemblX100,337,514 - 100,338,668 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000080813 Ensembl, ENTREZGENE
MGD MGI:3708090 ENTREZGENE
NCBI Gene 100417958 ENTREZGENE
PhenoGen Gm14828 PhenoGen