Sap30bpos (SAP30 binding protein, opposite strand) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Sap30bpos (SAP30 binding protein, opposite strand) Mus musculus
Analyze
Symbol: Sap30bpos
Name: SAP30 binding protein, opposite strand
RGD ID: 5146224
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
Previously known as: Gm11721
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39 Ensembl11115,837,276 - 115,842,931 (-)EnsemblGRCm39 Ensembl
GRCm3811115,946,447 - 115,952,105 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,946,450 - 115,952,105 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711115,807,761 - 115,813,419 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera11127,709,366 - 127,715,025 (-)NCBICelera
cM Map1180.91NCBI


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:164
Count of miRNA genes:151
Interacting mature miRNAs:162
Transcripts:ENSMUST00000132264
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_106367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_106613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000132264
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,837,276 - 115,842,931 (-)Ensembl
GRCm38.p6 Ensembl11115,946,450 - 115,952,105 (-)Ensembl
RefSeq Acc Id: XR_106367
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811115,946,447 - 115,952,105 (-)ENTREZGENE
MGSCv3711115,807,761 - 115,813,419 (-)ENTREZGENE
cM Map11 ENTREZGENE
RefSeq Acc Id: XR_106613
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera11127,709,366 - 127,715,025 (-)ENTREZGENE

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000087064 Ensembl
MGD MGI:3650575 ENTREZGENE
NCBI Gene 100503650 ENTREZGENE
PhenoGen Sap30bpos PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-03 Sap30bpos  SAP30 binding protein, opposite strand  Gm11721  predicted gene 11721  Symbol and/or name change 5135510 APPROVED