Gm16141 (predicted gene 16141) - Rat Genome Database

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Gene: Gm16141 (predicted gene 16141) Mus musculus
Analyze
Symbol: Gm16141
Name: predicted gene 16141
RGD ID: 5146198
MGI Page MGI
Description: INTERACTS WITH 2-hydroxypropanoic acid (ortholog); rac-lactic acid (ortholog)
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: Gm16140
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391118,939,652 - 18,968,330 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1118,963,817 - 18,965,154 (+)EnsemblGRCm39 Ensembl
GRCm381118,989,652 - 19,018,330 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1119,013,817 - 19,015,154 (+)EnsemblGRCm38mm10GRCm38
MGSCv371118,913,820 - 18,915,161 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1121,158,031 - 21,168,911 (+)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1111.35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Comparative Map Data
Gm16141
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391118,939,652 - 18,968,330 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1118,963,817 - 18,965,154 (+)EnsemblGRCm39 Ensembl
GRCm381118,989,652 - 19,018,330 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1119,013,817 - 19,015,154 (+)EnsemblGRCm38mm10GRCm38
MGSCv371118,913,820 - 18,915,161 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1121,158,031 - 21,168,911 (+)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1111.35NCBI
MEIS1-AS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38266,439,087 - 66,440,330 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl266,439,088 - 66,444,221 (-)EnsemblGRCh38hg38GRCh38
GRCh37266,666,219 - 66,667,462 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2p14NCBI
HuRef266,401,582 - 66,402,810 (-)NCBIHuRef
CHM1_1266,597,417 - 66,598,649 (-)NCBICHM1_1
T2T-CHM13v2.0266,448,163 - 66,449,420 (-)NCBIT2T-CHM13v2.0

Variants

.
Variants in Gm16141
872 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:115
Count of miRNA genes:103
Interacting mature miRNAs:112
Transcripts:ENSMUST00000152073
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000152073
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1118,963,817 - 18,965,154 (+)Ensembl
GRCm38.p6 Ensembl1119,013,817 - 19,015,154 (+)Ensembl
RefSeq Acc Id: XR_003949858
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391118,963,305 - 18,968,330 (+)NCBI
GRCm381119,013,305 - 19,018,330 (+)NCBI
Sequence:
RefSeq Acc Id: XR_381070
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391118,939,652 - 18,968,330 (+)NCBI
GRCm381118,989,652 - 19,018,330 (+)NCBI
Sequence:
Promoters
RGD ID:15093886
Promoter ID:EPDNEWNC_M1799
Type:multiple initiation site
Name:Gm16140_1
Description:predicted gene 16140 [Source:MGI Symbol;Acc:MGI:3802123]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381119,009,086 - 19,009,146EPDNEWNC
RGD ID:15093902
Promoter ID:EPDNEWNC_M1800
Type:initiation region
Name:Gm16141_1
Description:predicted gene 16141 [Source:MGI Symbol;Acc:MGI:3802122]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381119,013,867 - 19,013,927EPDNEWNC
RGD ID:8674036
Promoter ID:EPDNEW_M15048
Type:initiation region
Name:AK144295_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381119,013,897 - 19,013,957EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000087507 Ensembl
MGD MGI:3802122 ENTREZGENE
NCBI Gene Gm16141 ENTREZGENE
PhenoGen Gm16141 PhenoGen