Rps23-ps2 (ribosomal protein S23, pseudogene 2) - Rat Genome Database

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Gene: Rps23-ps2 (ribosomal protein S23, pseudogene 2) Mus musculus
Analyze
Symbol: Rps23-ps2
Name: ribosomal protein S23, pseudogene 2
RGD ID: 5146085
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ENSMUSG00000066902; Gm10186
Related Functional Gene: Rps23  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3983,633,752 - 3,634,250 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl83,633,799 - 3,634,230 (-)EnsemblGRCm39 Ensembl
GRCm3883,583,752 - 3,584,250 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl83,583,799 - 3,584,230 (-)EnsemblGRCm38mm10GRCm38
MGSCv3783,583,758 - 3,587,795 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera83,814,075 - 3,814,571 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map81.92NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Rps23-ps2
15 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:71
Count of miRNA genes:70
Interacting mature miRNAs:71
Transcripts:ENSMUST00000146939
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13432571Scvg1_msubcutaneous vessel growth QTL 1 (mouse)8124751082Mouse
11533914Mts5_mmammary tumor susceptibility 5 (mouse)8130447432Mouse
4140978Nilac5_mnicotine induced locomotor activity 5 (mouse)Not determined8131773288Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000146939
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl83,633,799 - 3,634,230 (-)Ensembl
GRCm38.p6 Ensembl83,583,799 - 3,584,230 (-)Ensembl
RefSeq Acc Id: XM_003084750
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3783,583,758 - 3,587,795 (-)ENTREZGENE
RefSeq Acc Id: XM_003086669
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera83,814,075 - 3,814,571 (-)ENTREZGENE
Protein Sequences
GenBank Protein EDL21920 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000066902 Ensembl, ENTREZGENE
MGD MGI:3642236 ENTREZGENE
NCBI Gene 100503854 ENTREZGENE
PhenoGen Rps23-ps2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-05-21 Rps23-ps2  ribosomal protein S23, pseudogene 2  Gm10186  predicted gene 10186  Symbol and/or name change 5135510 APPROVED