Gm17690 (predicted gene, 17690) - Rat Genome Database

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Gene: Gm17690 (predicted gene, 17690) Mus musculus
Analyze
Symbol: Gm17690
Name: predicted gene, 17690
RGD ID: 5145910
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39 Ensembl396,074,780 - 96,079,747 (-)EnsemblGRCm39 Ensembl
GRCm38396,167,464 - 96,172,433 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl396,167,464 - 96,172,416 (-)EnsemblGRCm38mm10GRCm38
MGSCv37395,971,387 - 95,976,356 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera397,603,612 - 97,608,581 (-)NCBICelera
cM Map341.65NCBI


References
Additional References at PubMed
PMID:18799693  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:112
Count of miRNA genes:104
Interacting mature miRNAs:111
Transcripts:ENSMUST00000180958
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
AI035306  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38396,171,381 - 96,171,497UniSTSGRCm38
MGSCv37395,975,304 - 95,975,420UniSTSGRCm37
Celera397,607,529 - 97,607,645UniSTS
Cytogenetic Map3F2.1UniSTS
MARC_10655-10656:1000474755:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38396,170,461 - 96,171,179UniSTSGRCm38
MGSCv37395,974,384 - 95,975,102UniSTSGRCm37
Celera397,606,609 - 97,607,327UniSTS
Cytogenetic Map3F2.1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_104794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_107525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000180958
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,074,780 - 96,079,730 (-)Ensembl
GRCm38.p6 Ensembl396,167,464 - 96,172,414 (-)Ensembl
RefSeq Acc Id: ENSMUST00000199721
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,078,691 - 96,079,732 (-)Ensembl
GRCm38.p6 Ensembl396,171,375 - 96,172,416 (-)Ensembl
RefSeq Acc Id: ENSMUST00000243232
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,078,188 - 96,079,747 (-)Ensembl
RefSeq Acc Id: XR_104794
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38396,167,464 - 96,172,433 (-)ENTREZGENE
MGSCv37395,971,387 - 95,976,356 (-)ENTREZGENE
cM Map3 ENTREZGENE
RefSeq Acc Id: XR_107525
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera397,603,612 - 97,608,581 (-)ENTREZGENE
Promoters
RGD ID:15092574
Promoter ID:EPDNEWNC_M492
Type:multiple initiation site
Name:Gm17690_1
Description:predicted gene, 17690 [Source:MGI Symbol;Acc:MGI:4937324]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38396,172,431 - 96,172,491EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097204 Ensembl
MGD MGI:4937324 ENTREZGENE
NCBI Gene 100504127 ENTREZGENE
PhenoGen Gm17690 PhenoGen