Gm17276 (predicted gene, 17276) - Rat Genome Database

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Pathways
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Gene: Gm17276 (predicted gene, 17276) Mus musculus
Analyze
Symbol: Gm17276
Name: predicted gene, 17276
RGD ID: 5145685
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39 Ensembl1732,332,385 - 32,360,817 (+)EnsemblGRCm39 Ensembl
GRCm381732,113,417 - 32,141,844 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1732,113,411 - 32,141,843 (+)EnsemblGRCm38mm10GRCm38
MGSCv371732,250,362 - 32,278,789 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1733,031,895 - 33,060,322 (+)NCBICelera
cM Map1717.36NCBI


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:97
Count of miRNA genes:91
Interacting mature miRNAs:95
Transcripts:ENSMUST00000180839
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
Notch3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381732,121,050 - 32,121,288UniSTSGRCm38
MGSCv371732,257,995 - 32,258,233UniSTSGRCm37
Celera1733,039,528 - 33,039,766UniSTS
Cytogenetic Map17B1UniSTS
cM Map1720.0UniSTS
AW229011  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381732,121,004 - 32,121,153UniSTSGRCm38
MGSCv371732,257,949 - 32,258,098UniSTSGRCm37
Celera1733,039,482 - 33,039,631UniSTS
Cytogenetic Map17B1UniSTS
cM Map1720.0UniSTS
Whitehead/MRC_RH17387.64UniSTS
Whitehead/MRC_RH17389.5UniSTS
X74760  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381732,120,964 - 32,121,148UniSTSGRCm38
MGSCv371732,257,909 - 32,258,093UniSTSGRCm37
Celera1733,039,442 - 33,039,626UniSTS
Cytogenetic Map17B1UniSTS
cM Map1720.0UniSTS
Whitehead_YAC17 UniSTS
371M4-T7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381732,136,497 - 32,136,656UniSTSGRCm38
MGSCv371732,273,442 - 32,273,601UniSTSGRCm37
Celera1733,054,975 - 33,055,134UniSTS
Cytogenetic Map17B1UniSTS
cM Map17 UniSTS
Notch3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381732,121,939 - 32,122,298UniSTSGRCm38
MGSCv371732,258,884 - 32,259,243UniSTSGRCm37
Celera1733,040,417 - 33,040,776UniSTS
Cytogenetic Map17B1UniSTS
Notch3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381732,122,751 - 32,124,338UniSTSGRCm38
MGSCv371732,259,696 - 32,261,283UniSTSGRCm37
Celera1733,041,229 - 33,042,816UniSTS
Cytogenetic Map17B1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_105895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_107058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000180839
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1732,332,403 - 32,360,817 (+)Ensembl
GRCm38.p6 Ensembl1732,113,429 - 32,141,843 (+)Ensembl
RefSeq Acc Id: ENSMUST00000236612
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1732,332,721 - 32,352,062 (+)Ensembl
GRCm38.p6 Ensembl1732,113,747 - 32,133,088 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237900
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1732,332,385 - 32,360,330 (+)Ensembl
GRCm38.p6 Ensembl1732,113,411 - 32,141,356 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242391
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1732,332,808 - 32,339,124 (+)Ensembl
RefSeq Acc Id: ENSMUST00000244740
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1732,332,820 - 32,334,166 (+)Ensembl
RefSeq Acc Id: ENSMUST00000246221
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1732,332,843 - 32,339,140 (+)Ensembl
RefSeq Acc Id: XR_105895
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381732,113,417 - 32,141,844 (+)ENTREZGENE
MGSCv371732,250,362 - 32,278,789 (+)ENTREZGENE
cM Map17 ENTREZGENE
RefSeq Acc Id: XR_107058
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera1733,031,895 - 33,060,322 (+)ENTREZGENE
Promoters
RGD ID:15094830
Promoter ID:EPDNEWNC_M2737
Type:multiple initiation site
Name:Gm17276_2
Description:predicted gene, 17276 [Source:MGI Symbol;Acc:MGI:4936910]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381732,113,411 - 32,113,471EPDNEWNC
RGD ID:15094819
Promoter ID:EPDNEWNC_M2738
Type:multiple initiation site
Name:Gm17276_1
Description:predicted gene, 17276 [Source:MGI Symbol;Acc:MGI:4936910]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381732,113,751 - 32,113,811EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097305 Ensembl
MGD MGI:4936910 ENTREZGENE
NCBI Gene 100504381 ENTREZGENE
PhenoGen Gm17276 PhenoGen