Gm16364 (predicted gene 16364) - Rat Genome Database

Name: Gm16364
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm16364 (predicted gene 16364) Mus musculus

Analyze

Symbol:

Gm16364

Name:

predicted gene 16364

RGD ID:

5145538

MGI Page

MGI

Description:

ASSOCIATED WITH decreased fat cell size; decreased lipogenesis; decreased liver weight

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

Gm16365; Hilnc; predicted gene 16365

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	39,432,067 - 39,489,678 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	39,434,492 - 39,489,678 (-)	Ensembl		GRCm39 Ensembl
GRCm39 Ensembl	10	39,432,067 - 39,434,058 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	39,556,071 - 39,613,682 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	39,558,496 - 39,613,682 (-)	Ensembl	GRCm38		mm10	GRCm38
GRCm38.p6 Ensembl	10	39,556,071 - 39,558,062 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	39,275,877 - 39,277,868 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	10	40,441,650 - 40,443,641 (-)	NCBI		Celera
Cytogenetic Map	10	B1	NCBI
cM Map	10	20.78	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

decreased fat cell size (IAGP)

decreased lipogenesis (IAGP)

decreased liver weight (IAGP)

decreased susceptibility to diet-induced hepatic steatosis (IAGP)

decreased susceptibility to diet-induced obesity (IAGP)

decreased white adipose tissue mass (IAGP)

improved glucose tolerance (IAGP)

increased energy expenditure (IAGP)

increased insulin sensitivity (IAGP)

References

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073	PMID:18799693	PMID:24200680	PMID:24316575	PMID:27899360
PMID:34750570

Genomics

Variants

Variants in Gm16364
2176 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	988
Count of miRNA genes:	539
Interacting mature miRNAs:	612
Transcripts:	ENSMUST00000122987, ENSMUST00000124241, ENSMUST00000142723, ENSMUST00000143877, ENSMUST00000153722
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
13208561	Wght8_m	weight 8 (mouse)					10	4950000	43875996	Mouse
1302092	Ath11_m	atherosclerosis 11 (mouse)			Not determined		10	6151945	58693521	Mouse
1357740	Obsty3_m	obesity 3 (mouse)			Not determined		10	8235478	116190980	Mouse
1558865	Lith21_m	lithogenic gene 21 (mouse)			Not determined		10	8525003	42525126	Mouse
1301448	Pas11_m	pulmonary adenoma susceptibility 11 (mouse)			Not determined		10	9890264	43890391	Mouse
1301129	Alcp15_m	alcohol preference locus 15 (mouse)			Not determined		10	9890264	43890391	Mouse
1302133	Alcp16_m	alcohol preference locus 16 (mouse)			Not determined		10	9890264	43890391	Mouse
1301386	Sysbp1_m	systolic blood pressure 1 (mouse)			Not determined		10	10108265	87401095	Mouse
1357825	Kidpq2_m	kidney weight percentage QTL 2 (mouse)			Not determined		10	12704051	84079784	Mouse
1357656	Hrtq3_m	heart weight QTL 3 (mouse)			Not determined		10	12704051	84079784	Mouse
1357864	Scfpq1_m	subcutaneous fat pad percentage QTL 1 (mouse)			Not determined		10	12704051	84079784	Mouse
39128215	Lwq17_m	liver weight QTL 17 (mouse)					10	12704051	84079784	Mouse
4141956	Egq7_m	early growth QTL 7 (mouse)			Not determined			12704051	84079784	Mouse
4141943	W6q6_m	weight 6 weeks QTL 6 (mouse)			Not determined			12704051	84079784	Mouse
4142272	W10q5_m	weight 10 weeks QTL 5 (mouse)			Not determined			12704051	84079784	Mouse
4142380	W3q11_m	weight 3 weeks QTL 11 (mouse)			Not determined			12704051	84079784	Mouse
1302067	Scc9_m	colon tumor susceptibility 9 (mouse)			Not determined		10	18259333	125575232	Mouse
27226772	Tibl13_m	tibia length 13, 10 week (mouse)					10	18875748	129635869	Mouse
10755518	Chol16_m	cholesterol 16 (mouse)					10	18915043	52915043	Mouse
1302160	Mbis2_m	Mycobacterium bovis-induced systemic lupus erythematosus 2 (mouse)			Not determined		10	20283185	56031223	Mouse
1558757	Eae34_m	experimental allergic encephalomyelitis susceptibility 34 (mouse)			Not determined		10	21408154	114217230	Mouse
1301003	Lmblgq4_m	limb length QTL 4 (mouse)			Not determined		10	21591192	68091639	Mouse
26884394	Humsd3_m	humerus midshaft diameter 3, 10 week (mouse)					10	22375899	51076096	Mouse
26884403	Cvht8_m	cranial vault height 8, 16 week (mouse)					10	22875899	91035862	Mouse
26884426	Cvht1_m	cranial vault height 1, 5 week (mouse)					10	24675898	121035905	Mouse
4142209	Psrs1_m	psoriasis susceptibility 1 (mouse)			Not determined		10	26890264	46720483	Mouse
1300898	Cfid_m	cystic fibrosis intestinal distress (mouse)			Not determined		10	29720403	63720483	Mouse
10045632	Heal16_m	wound healing/regeneration 16 (mouse)			Not determined		10	30974499	64974630	Mouse
1357558	Bmch4_m	bone mechanical trait 4 (mouse)			Not determined		10	31577136	65577284	Mouse
27095920	Pglq9_m	pelvic girdle length QTL 9, 10 week (mouse)					10	33775996	70835830	Mouse
27095911	Pglq15_m	pelvic girdle length QTL 15, 16 week (mouse)					10	39175996	129635869	Mouse
27226764	Tibl19_m	tibia length 19, 16 week (mouse)					10	39175996	129635869	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_152259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_152260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC153422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC160403	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK045600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BM898846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU609535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KY467538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KY467539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000122987

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,434,492 - 39,464,448 (-)	Ensembl
GRCm38.p6 Ensembl	10	39,558,496 - 39,588,452 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000124241

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,438,376 - 39,489,667 (-)	Ensembl
GRCm38.p6 Ensembl	10	39,562,380 - 39,613,671 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000142723

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,436,021 - 39,489,663 (-)	Ensembl
GRCm38.p6 Ensembl	10	39,560,025 - 39,613,667 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000143877

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,471,845 - 39,489,678 (-)	Ensembl
GRCm38.p6 Ensembl	10	39,595,859 - 39,613,682 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000153722

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,432,067 - 39,434,058 (-)	Ensembl
GRCm38.p6 Ensembl	10	39,556,071 - 39,558,062 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000244030

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	39,471,852 - 39,489,660 (-)	Ensembl

RefSeq Acc Id:

NR_152259

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	10	39,432,067 - 39,489,678 (-)	NCBI
GRCm38	10	39,556,071 - 39,613,682 (-)	NCBI

Sequence:

show sequence

GAACTCACTGCGTACTTTGATTTCTTGATGGCTGACTATGAGTACTGAAAACTCCAACCCGGCA
GCGTGTAGTGCTGTGTGCCTCTCCTTATAGAGTTAAACTCAGCCAGGCCTGCCCGAGAGAAACC
CTAAACTGGCGCCACATTCCTGCTGGAACTCTGTCACAGTCTCAGCTCAAACTGGCCTCCAGAT
GGACAAGGTGAAGAGACAGAGGTCATACCCATGAGGAAGAGGCTCTTGGCAGACATGGAATCTA
CTGTCACCTTATTCTTGGATTCTTAAGCCTCGTAAACACTGGTACTCTCTCCAGACCTCCCAAA
GTCCAGGGAATATATGAACAATTCTACGCACTGGCTGAAACAGACACATACCAACGGCAGCTTT
GTCAAAAGAGTAGACACTGCAACTGACTGAGTGACGAGTGCAACAGAATAGCTGTCTTCCAACC
AACCAAAGGCCAGAACACACGTGGGTGGGCGGCCCTGCAAACCTGCCACTTCTGCAGTGAACCT
TTGCAATGGTCAAGATGTTCTGGCTCAGCAAGGACTCAGAACAACCAGGAGGTTTGGAGAGCCA
CTCCATGGATCAGAGTACAAATGTGGAGCAGAGGGATACTGACCAGAGGGTACAGATGGAGATG
AAGGACTGACCCTGAGAAGACAATAATTACTAGTTTTGTTTACTGTTAGCCCCCTCACCAGTCA
CCTGGGGCAGCAGTTTTTATTAAAACCGCTGTATTAATAAAATCAGAAATGCTGGTTGGGAGAG
CTGCGGCACACAAAGCCACGTCAGCCAAGAGAAACCTTGCAGGGGAGGAGACAGCATTCCGAGC
TCTCTGAAGGAACACAGTGTACTGCAGTGCTTTGGCCCTGGGGCCCATGGGCTGCGGAGGCAGA
GGACCCATCATGCACTGCTAAGAGTCTACTGTGGGCAGACACTGCTGGGAATCAGAACATGGAA
GATGCCCCGTTCCTCTCAAGGAAGGCAGAGCTGCCGGGAGTTCCAGACAGAGGCAGGCAGAGAG
ACCTCTGTGAGGTTGATGTCAGCTTGGTCTACATAGCCACTTCTCGGCTAACCCAGTGAGATGC
TGTCATAGACAAATTCCTTGGGGTGTCCAAGATGTAAAGGGAGAGAGACAGCAGAGACACCCGA
AGTCAAGTCTTCCCCTCACACTGCTCACTGCACACACGTTAGGAGAACACTCACACCTACAATA
CACAGCTACACCTAAGGCTCCGGACACTGCAAAGAGGAGGCAGAAAGACTCTAAGAGCCAGGGG
ACCAGCATTCTGTGAGGTTTTGTCTCCTAGTAACATCAGAAGCTACGCCTGTAAAGTCTCACCA
GCATCACTGCCTAAACATGACCTGACGAAGGAGGACACCAATGGTTATGTCAACTGAATGGAAA
AAAAGCCCAATGAGACCTGAACCCTACACAAAAACTATTGGCAACTGAGTGAAGCTGGAGCGAG
AGGTGGCCCTCCCCAGGGAAAAGCACACCAACTCGTCATCTAGTGTGGAATGGTGACACAAGCA
ACCCTGTATGGACTTAGCAGGCTGTATTTAGAAATATATATGCATGTGTATACAGACACATCTA
TGCATGCAATATCAACTGATGAAAAAAGAGGCTATGAGTTTGAAAGAGTGTGTGGGGAGGGGTA
ACTAGGAAGGTTTAGAAGGAGGAAAGGCCAAGGAGAAACATTGTAACGAGAATACAAGCTCAAA
ACTAAACCCCAACAAAAAGAGTAAAAAGCATGCTTGCTTACAACCCCACAAGCCACCAGTCATC
GCTCCAGGCCTCTGGCTCCCTGGCTCCTTGGCTCCCTGCAGGTGGCACAGTGCCCCTAGACACC
CACCTGGCCCAAGGCTAGCTCCTATCAGAGTTATAGTCAGCGAGCACCTCTTAGTGACTTCCAC
TGTCACCATCTCCTAACCACATTCCTCTTTTGCTCCACTCAATGCTACTAGCCAGGGTGAGTGT
AGTTTGTTGGTTTGTATTGCCTATATTCTTCAAGAAAAAAAAAACGTTCCTGAGGGCAGGAACT
CTCGTGTTACTTCACTGCTATAATCCTTGGGTCTGGAAAAGCACTCAATGCATAACAGGCATTC
AATAAATATTTGTGGACTTGT

hide sequence

RefSeq Acc Id:

NR_152260

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	10	39,471,851 - 39,489,678 (-)	NCBI
GRCm38	10	39,595,855 - 39,613,682 (-)	NCBI

Sequence:

show sequence

GAACTCACTGCGTACTTTGATTTCTTGATGGCTGACTATGAGTACTGAAAACTCCAACCCGGCA
GCGTGTAGTGCTGTGTGCCTCTCCTTATAGAGTTAAACTCAGCCAGGCCTGCCCGAGAGAAACC
CTAAACTGGCGCCACATTCCTGCTGGAACTCTGTCACAGTCTCAGCTCAAACTGGCCTCCAGAT
GGACAAGGTGAAGAGACAGAGGTCATACCCATGAGGAAGAGGCTCTTGGCAGACATGGAATCTA
CTGTCACCTTATTCTTGGATTCTTAAGCCTCGTAAACACTGAGTGAGTCCAGCTGGACCTGTCA
ATCACCTCGCCTGGAGACTACCCCTCAGGAAAACTGATTCACCTGAAGATGTTACAGAGATGGG
GGAAATAATTATTCTCTTAATGAGATAACATGTGTGTACCTCCCTGAGAAGTCCCTCCCTCAGT
CCAGCTGTTTGCAGATCTTTCCTACTAAGACAGCCTGCTTTCCCCAGTTCTAACTCCAAAACTG
TAACTTCTCCTTTCCCCTTGTCTCATCTTTGGCTAAAGGCCAAAACCTCCTCCTGCTTCCAACC
TCTGTACACTCTCTTTCTTTAACCCCCTCCAAGCCCCAGTTACTTGGCGCCCTTCCTTGCAGAA
CCTGCCAACTCTCCTGAAACCTACCTCGGAAGGCATGTCATGCTCTCCTCTCCAGCTCCCCTTT
CCAGGCAGCAGTTGAGGTTTGTAGCTTCCTGACCTTGTGGTTTACTCCTGAGCGCCAATAAAAG
AGTCCACAAGCTTCCAAAAAAAAAAAAAAAAAA

hide sequence

Promoters

RGD ID:

8671816

Promoter ID:

EPDNEW_M13938

Type:

multiple initiation site

Name:

Gm16364_1

Description:

Mus musculus predicted gene 16364 , transcript variant 2, longnon-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	10	39,613,671 - 39,613,731	EPDNEW

RGD ID:

15093738

Promoter ID:

EPDNEWNC_M1651

Type:

multiple initiation site

Name:

Gm16364_1

Description:

predicted gene 16364 [Source:MGI Symbol;Acc:MGI:3840142]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	10	39,613,671 - 39,613,731	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000086915	Ensembl, ENTREZGENE
	ENSMUSG00000087014	Ensembl
Ensembl Transcript	ENSMUST00000143877	ENTREZGENE
MGD	MGI:3840142	ENTREZGENE
NCBI Gene	100504626	ENTREZGENE
PhenoGen	Gm16364	PhenoGen
RNAcentral	URS0000CCDFE4	RNACentral
	URS0000CCE017	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-11-21	Gm16364	predicted gene 16364	Gm16365	predicted gene 16365	Data merged from RGD:9602732	737654	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Mammalian Phenotype