Traj1 (T cell receptor alpha joining 1) - Rat Genome Database

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Gene: Traj1 (T cell receptor alpha joining 1) Mus musculus
Analyze
Symbol: Traj1
Name: T cell receptor alpha joining 1
RGD ID: 5144755
MGI Page MGI
Description:
Type: pseudo (Ensembl: TR_J_pseudogene)
RefSeq Status: VALIDATED
Previously known as: Gm16917
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,456,271 - 54,456,299 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,456,271 - 54,456,299 (+)EnsemblGRCm39 Ensembl
GRCm381454,218,814 - 54,218,842 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,218,814 - 54,218,842 (+)EnsemblGRCm38mm10GRCm38
MGSCv371454,838,489 - 54,838,517 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map14C2NCBI
cM Map1427.7NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:1505953   PMID:2421164   PMID:2439914   PMID:2524381   PMID:2582491   PMID:2583098   PMID:2993907   PMID:2995827   PMID:3016457   PMID:3025740   PMID:3263646   PMID:3493439  
PMID:3839904   PMID:6092964   PMID:6208487   PMID:6548551   PMID:15608191  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:94
Interacting mature miRNAs:99
Transcripts:ENSMUST00000103739
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142310Carg1_mCandida albicans resistance gene 1 (mouse)Not determined5138245954461655Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000103739
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1454,456,271 - 54,456,299 (+)Ensembl
GRCm38.p6 Ensembl1454,218,814 - 54,218,842 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000076927 Ensembl, ENTREZGENE
MGD MGI:4439841 ENTREZGENE
NCBI Gene 100124400 ENTREZGENE
PhenoGen Traj1 PhenoGen