Gm17922 (predicted gene, 17922) - Rat Genome Database

Name: Gm17922
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm17922 (predicted gene, 17922) Mus musculus

Analyze

Symbol:

Gm17922

Name:

predicted gene, 17922

RGD ID:

5143648

MGI Page

MGI

Description:

Type:

pseudo (Ensembl: processed_pseudogene)

RefSeq Status:

INFERRED

Related Functional Gene:

Npm1

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	93,439,523 - 93,440,339 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	93,439,536 - 93,440,337 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	93,202,087 - 93,202,903 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	93,202,100 - 93,202,901 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	93,601,306 - 93,602,122 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	14	90,834,743 - 90,835,560 (-)	NCBI		Celera
Cytogenetic Map	14	E2.1	NCBI
cM Map	14	45.8	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in Gm17922
51 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300551	Lprm3_m	lymphoproliferation modifier 3 (mouse)			Not determined		14	71221224	105221344	Mouse
1301844	Pgia29_m	proteoglycan induced arthritis 29 (mouse)			Not determined		14	74352296	108352384	Mouse
14928314	Manh77_m	mandible shape 77 (mouse)					14	76767790	110767790	Mouse
13524530	Bodwtq11_m	body wweight QTL 11 (mouse)					14	87767629	102538219	Mouse
11039527	Ccc2_m	colitis susceptibility in the Collaborative Cross 2 (mouse)					14	59918612	94138217	Mouse
1558819	Ossc2_m	osteosarcoma susceptibility 2 (mouse)			Not determined		14	74394976	108395093	Mouse
1300666	Fembm2_m	femoral bone morphometry 2 (mouse)			Not determined		14	62397460	96397680	Mouse
14747006	Mancz12_m	mandible centroid size 12 (mouse)					14	70071977	104071977	Mouse
1357565	wrmod1_m	wobbler modifier 1 (mouse)			Not determined		14	58179640	101859473	Mouse
1357589	Kdnw2_m	kidney weight 2 (mouse)			Not determined		14	20887473	121269804	Mouse
4142508	Tgq25_m	triglyceride QTL 25 (mouse)			Not determined			85134068	119134068	Mouse
10054475	Ossc3_m	osteosarcoma susceptibility 3 (mouse)			Not determined		14	70863768	104863926	Mouse
1558823	Tbbmd6_m	total body bone mineral density 6 (mouse)			Not determined		14	77073696	111073787	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NG_019922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000226234

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	93,439,536 - 93,440,337 (-)	Ensembl
GRCm38.p6 Ensembl	14	93,202,100 - 93,202,901 (-)	Ensembl

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000115632	Ensembl, ENTREZGENE
MGD	MGI:5010107	ENTREZGENE
NCBI Gene	100416111	ENTREZGENE
PhenoGen	Gm17922	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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