Gm18244 (predicted gene, 18244) - Rat Genome Database

Name: Gm18244
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Gm18244 (predicted gene, 18244) Mus musculus

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Symbol:

Gm18244

Name:

predicted gene, 18244

RGD ID:

5143315

MGI Page

MGI

Description:

Type:

pseudo (Ensembl: processed_pseudogene)

RefSeq Status:

INFERRED

Related Functional Gene:

Zfp384

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	3,089,869 - 3,091,434 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	3,089,869 - 3,091,434 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	3,039,869 - 3,041,434 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	3,039,869 - 3,041,434 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	3,039,869 - 3,041,434 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Cytogenetic Map	12	A1.1	NCBI
cM Map	12	1.6	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in Gm18244
35 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301393	Dyscalc3_m	dystrophic cardiac calcinosis 3 (mouse)			Not determined		12	1	22418579	Mouse
12910983	Pifs1_m	peptide-induced fatal syndrome 1 (mouse)					12	1	30433078	Mouse
4141436	Chldq7_m	cholesterol and HDL QTL 7 (mouse)			Not determined		12	1	27920733	Mouse
4141660	Nbwa1_m	NZB and NZW autoimmunity 1 (mouse)			Not determined		12	340134	34340302	Mouse
1301143	Skull17_m	skull morphology 17 (mouse)			Not determined		12	1	22418579	Mouse
1301655	Bmd12_m	bone mineral density 12 (mouse)			Not determined		12	1	24662697	Mouse
1301207	Circp1_m	circadian photosensitivity 1 (mouse)			Not determined		12	1	33430339	Mouse
1301925	Ath6_m	atherosclerosis 6 (mouse)			Not determined		12	1	32758756	Mouse
1357519	Vtbt12_m	vertebral trabecular bone trait 12 (mouse)			Not determined		12	1	24662697	Mouse
11039525	Tbbr2_m	Trypanosoma brucei brucei response 2 (mouse)					12	1	22418579	Mouse
10402496	Lmr22_m	leishmaniasis resistance 22 (mouse)			Not determined		12	1	22418579	Mouse
4141296	Femwf9_m	femur work to failure 9 (mouse)			Not determined			1	27920733	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NG_018302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC147782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000219747

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	3,089,869 - 3,091,434 (+)	Ensembl
GRCm38.p6 Ensembl	12	3,039,869 - 3,041,434 (+)	Ensembl

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000112147	Ensembl, ENTREZGENE
MGD	MGI:5010429	ENTREZGENE
NCBI Gene	100416777	ENTREZGENE
PhenoGen	Gm18244	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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